BAC Information

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BAC

Clone NameB6Ng01-299F18
Chromosome13 (Build37)
Map Location 96,708,249 - 96,795,516
singlet/doubletdoublet
Overlap geneSv2c
Upstream geneWdr41, Pde8b, Zbed3, Aggf1, Crhbp, S100z, F2rl1, F2r, Iqgap2, F2rl2
Downstream geneLOC667582, 1200014M14Rik, 9330128J19Rik, Polk, Col4a3bp, Hmgcr, LOC100039456, LOC625662, 1700029F12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-299F18.bB6Ng01-299F18.g
ACCGA094221GA094222
length1,1951,047
definitionB6Ng01-299F18.b B6Ng01-299F18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,794,339 - 96,795,516)(96,708,249 - 96,709,294)
sequence
gaattcttgagcagcagaaagagggttttgatggcttcatggcctggtaa
gttaagacatgagtgctaatggtggtgggaggtaaggctagataacagga
ccagcctaggctttgaaccagcatcggatgatgacggcacttttctccgc
tcattcagtctttggtaaagttaaagctttatccagagccaggtagttgg
taatacctgaagatttccagtataaaaatcactcacctgtaatcctagca
ctgagcagggctacatagtgcatttcagcagggcaaggctacacagtgaa
gccctgccttactctccatctcttcgctcccccttgcctcgtctccctcc
tcccttcacccttccttcccagcaaactaagtctcaagacccagaacagc
agcaggctttgcccttctccagcatctcccctgctctccacctgcatgca
ggagctgctgggatgcccgattcactcctgatagctgaagcattgtcact
agaacgaggggtaagggaggagacagcaaagccagggagcactcctggcc
tcaagcactaggtgcccataacagccataactaagggtatagctctcctg
ggcacctcctcgcagaacctgacccagtggaaactgctaccagcacataa
agggacaggccaggttttcctctgcttcagaagttgtattgccataacta
tctagatttgttgtattatgcttttgttgatattgtccattatgcacata
tagcttctctctttctaccatgtgaattctgagaatcaaactccaggacc
aacagcaagcactttatactcactacgccatctccccagccctgggttga
ttcttgccagcacctgtggcccacatggtgacaaacgggagcttgaaagg
tggctctttgcttatatcattttcttagatgtaaatccagagaggcttgg
aaacttcattctacaccttgaggcactttgtttttaaggtattgcctttg
tttattattcattttatgttgtgtgcgcgtgcacatgcattacacatgta
tacagtgcgtgtgtccaaggcacggaccacaaccttacagagtcccttcc
ttctgtttccaccatgttgggttcatggagaatgaaattcaggccaccgg
caatctttacaagctggagcccattcaccagagaccctcctcttg
gaattccagtgctgtgacctggctctatctttttttttttttttttggaa
gctttctagtaaacctgtttatctagatcagcagttctcaacctgtgggt
aatgattccagtgacaaacttctgtctccaagaatatttacattataatt
catagcagtagcagacttacagtgaggaagtagcaacaaaaataatttga
tcgttgtgggtcaccaaaacatgaggagctgtgttaaagggtcacagcct
tgggaaggttgagagccactgctctagacttcttgctactttttctgttg
atgctgtaatttgctgttgagataagagttttgcagtgtggtacaggcta
acttcaaacttgcgttcagcctcccatattctgggattagatgcatgtat
aaccacagctgccttggtctagcacattgaataaaagctctaaagctgtt
tgtacccagtgacttggtactatactttgtggaatgtttctagcaaaagg
agagaagagggaagcaaaaatcttcaccaaagctctttatagggctttat
atgttatgtgtgagcattttctagcagttgaaaggaacaatgaaaataaa
taatgaacatcagcgtgctcaaggtttataaggtcgtaggactgacacat
ggggaccatggtagtaagtggaaatttactgtgtggagtgggaaataaaa
gttgcaagcctgatatttatgctgattaaaattatgaaaagatactgatg
catattatgatgaccaaaagagtattaggagagcatcagatatacagcta
gctttctacttagatagactgtgaattcatattggatcttgttttccctc
cttgaactttacaagccaggatttgttgttattcttgggtttttgttttt
tttgggtttttttctgaagacagtcttatgcagtgtaagcttgttctcca
atgtgcagcaccaacacctgggaagtttttttcctaaagtttagcatcac
accaatgcaggtttttgaaatgcaagactgttcataggcactcagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_96794339_96795516
seq2: B6Ng01-299F18.b_49_1243 (reverse)

seq1  CAAGAGG------TCTGGTGA--TGGCT-CAGCTGGTAAAGATGCCCGTT  41
      |||||||      ||||||||   |||| ||||| ||||||||  ||| |
seq2  CAAGAGGAGGGTCTCTGGTGAATGGGCTCCAGCTTGTAAAGATTGCCGGT  50

seq1  GGCCTG-ATTTCCATCTCCATGA--CCCACATGGTGGAAACAG-AGGAA-  86
      |||||| |||||  |||||||||  || ||||||||||||||| ||||| 
seq2  GGCCTGAATTTCATTCTCCATGAACCCAACATGGTGGAAACAGAAGGAAG  100

seq1  GGACTCCTGTAA-GTTGTGGTCCGTGC--TTGACACACGCACTGTATTAC  133
      ||||| |||||| ||||||||||||||  | ||||||||||||||| |||
seq2  GGACT-CTGTAAGGTTGTGGTCCGTGCCTTGGACACACGCACTGTA-TAC  148

seq1  ATGTGT-ATGCATGTGCACGCGCACACAACAATAAATGAATAAATAAACA  182
      |||||| ||||||||||||||||||||||||  |||||||| ||||||||
seq2  ATGTGTAATGCATGTGCACGCGCACACAACATAAAATGAAT-AATAAACA  197

seq1  AAGGCAATACC-TAAAAACAAAGTGCCTCAAGGGTGTAGAATGAGGTT--  229
      ||||||||||| ||||||||||||||||||| |||||||||||| |||  
seq2  AAGGCAATACCTTAAAAACAAAGTGCCTCAA-GGTGTAGAATGAAGTTTC  246

seq1  CCAGCCTCTTCTGGATTTACATCTAAGAAAATGATATAAGCAAAGAGCCA  279
      | |||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCTC-TCTGGATTTACATCTAAGAAAATGATATAAGCAAAGAGCCA  295

seq1  CC-TTCAAGCTCCCGTTTGTCACCATGTGGGCCACAGGTGCTGGCAAGAA  328
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCAAGCTCCCGTTTGTCACCATGTGGGCCACAGGTGCTGGCAAGAA  345

seq1  TCAACCCAGGGCTGGGGAGATGGCGTAGTGAGTATAAAGTGCTTGCTGTT  378
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCCAGGGCTGGGGAGATGGCGTAGTGAGTATAAAGTGCTTGCTGTT  395

seq1  GGTCCTGGAGTTTGATTCTCAGAATTCACATGGTAGAAAGAGAGAAGCTA  428
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTGGAGTTTGATTCTCAGAATTCACATGGTAGAAAGAGAGAAGCTA  445

seq1  TATGTGCATAATGGACAATATCAACAAAAGCATAATACAACAAATCTAGA  478
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGCATAATGGACAATATCAACAAAAGCATAATACAACAAATCTAGA  495

seq1  TAGTTATGGCAATACAACTTCTGAAGCAGAGGAAAACCTGGCCTGTCCCT  528
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTATGGCAATACAACTTCTGAAGCAGAGGAAAACCTGGCCTGTCCCT  545

seq1  TTATGTGCTGGTAGCAGTTTCCACTGGGTCAGGTTCTGCGAGGAGGTGCC  578
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTGCTGGTAGCAGTTTCCACTGGGTCAGGTTCTGCGAGGAGGTGCC  595

seq1  CAGGAGAGCTATACCCTTAGTTATGGCTGTTATGGGCACCTAGTGCTTGA  628
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGAGCTATACCCTTAGTTATGGCTGTTATGGGCACCTAGTGCTTGA  645

seq1  GGCCAGGAGTGCTCCCTGGCTTTGCTGTCTCCTCCCTTACCCCTCGTTCT  678
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGGAGTGCTCCCTGGCTTTGCTGTCTCCTCCCTTACCCCTCGTTCT  695

seq1  AGTGACAATGCTTCAGCTATCAGGAGTGAATCGGGCATCCCAGCAGCTCC  728
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACAATGCTTCAGCTATCAGGAGTGAATCGGGCATCCCAGCAGCTCC  745

seq1  TGCATGCAGGTGGAGAGCAGGGGAGATGCTGGAGAAGGGCAAAGCCTGCT  778
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGCAGGTGGAGAGCAGGGGAGATGCTGGAGAAGGGCAAAGCCTGCT  795

seq1  GCTGTTCTGGGTCTTGAGACTTAGTTTGCTGGGAAGGAAGGGTGAAGGGA  828
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTCTGGGTCTTGAGACTTAGTTTGCTGGGAAGGAAGGGTGAAGGGA  845

seq1  GGAGGGAGACGAGGCAAGGGGGAGCGAAGAGATGGAGAGTAAGGCAGGGC  878
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGAGACGAGGCAAGGGGGAGCGAAGAGATGGAGAGTAAGGCAGGGC  895

seq1  TTCACTGTGTAGCCTTGCCCTGCTGAAATGCACTATGTAGCCCTGCTCAG  928
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTGTGTAGCCTTGCCCTGCTGAAATGCACTATGTAGCCCTGCTCAG  945

seq1  TGCTAGGATTACAGGTGAGTGATTTTTATACTGGAAATCTTCAGGTATTA  978
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGGATTACAGGTGAGTGATTTTTATACTGGAAATCTTCAGGTATTA  995

seq1  CCAACTACCTGGCTCTGGATAAAGCTTTAACTTTACCAAAGACTGAATGA  1028
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTACCTGGCTCTGGATAAAGCTTTAACTTTACCAAAGACTGAATGA  1045

seq1  GCGGAGAAAAGTGCCGTCATCATCCGATGCTGGTTCAAAGCCTAGGCTGG  1078
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGAGAAAAGTGCCGTCATCATCCGATGCTGGTTCAAAGCCTAGGCTGG  1095

seq1  TCCTGTTATCTAGCCTTACCTCCCACCACCATTAGCACTCATGTCTTAAC  1128
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTTATCTAGCCTTACCTCCCACCACCATTAGCACTCATGTCTTAAC  1145

seq1  TTACCAGGCCATGAAGCCATCAAAACCCTCTTTCTGCTGCTCAAGAATTC  1178
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCAGGCCATGAAGCCATCAAAACCCTCTTTCTGCTGCTCAAGAATTC  1195

seq1: chr13_96708249_96709294
seq2: B6Ng01-299F18.g_69_1115

seq1  GAATTCCAGTGCTGTGACCTGGCTCTATCTTTTTTTTTTTTTTTTTGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTGCTGTGACCTGGCTCTATCTTTTTTTTTTTTTTTTTGGAA  50

seq1  GCTTTCTAGTAAACCTGTTTATCTAGATCAGCAGTTCTCAACCTGTGGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCTAGTAAACCTGTTTATCTAGATCAGCAGTTCTCAACCTGTGGGT  100

seq1  AATGATTCCAGTGACAAACTTCTGTCTCCAAGAATATTTACATTATAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATTCCAGTGACAAACTTCTGTCTCCAAGAATATTTACATTATAATT  150

seq1  CATAGCAGTAGCAGACTTACAGTGAGGAAGTAGCAACAAAAATAATTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCAGTAGCAGACTTACAGTGAGGAAGTAGCAACAAAAATAATTTGA  200

seq1  TCGTTGTGGGTCACCAAAACATGAGGAGCTGTGTTAAAGGGTCACAGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTGTGGGTCACCAAAACATGAGGAGCTGTGTTAAAGGGTCACAGCCT  250

seq1  TGGGAAGGTTGAGAGCCACTGCTCTAGACTTCTTGCTACTTTTTCTGTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAGGTTGAGAGCCACTGCTCTAGACTTCTTGCTACTTTTTCTGTTG  300

seq1  ATGCTGTAATTTGCTGTTGAGATAAGAGTTTTGCAGTGTGGTACAGGCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGTAATTTGCTGTTGAGATAAGAGTTTTGCAGTGTGGTACAGGCTA  350

seq1  ACTTCAAACTTGCGTTCAGCCTCCCATATTCTGGGATTAGATGCATGTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAAACTTGCGTTCAGCCTCCCATATTCTGGGATTAGATGCATGTAT  400

seq1  AACCACAGCTGCCTTGGTCTAGCACATTGAATAAAAGCTCTAAAGCTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACAGCTGCCTTGGTCTAGCACATTGAATAAAAGCTCTAAAGCTGTT  450

seq1  TGTACCCAGTGACTTGGTACTATACTTTGTGGAATGTTTCTAGCAAAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCCAGTGACTTGGTACTATACTTTGTGGAATGTTTCTAGCAAAAGG  500

seq1  AGAGAAGAGGGAAGCAAAAATCTTCACCAAAGCTCTTTATAGGGCTTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGAGGGAAGCAAAAATCTTCACCAAAGCTCTTTATAGGGCTTTAT  550

seq1  ATGTTATGTGTGAGCATTTTCTAGCAGTTGAAAGGAACAATGAAAATAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTATGTGTGAGCATTTTCTAGCAGTTGAAAGGAACAATGAAAATAAA  600

seq1  TAATGAACATCAGCGTGCTCAAGGTTTATAAGGTCGTAGGACTGACACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAACATCAGCGTGCTCAAGGTTTATAAGGTCGTAGGACTGACACAT  650

seq1  GGGGACCATGGTAGTAAGTGGAAATTTACTGTGTGGAGTGGGAAATAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACCATGGTAGTAAGTGGAAATTTACTGTGTGGAGTGGGAAATAAAA  700

seq1  GTTGCAAGCCTGATATTTATGCTGATTAAAATTATGAAAAGATACTGATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCAAGCCTGATATTTATGCTGATTAAAATTATGAAAAGATACTGATG  750

seq1  CATATTATGATGACCAAAAGAGTATTAGGAGAGCATCAGATATACAGCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTATGATGACCAAAAGAGTATTAGGAGAGCATCAGATATACAGCTA  800

seq1  GCTTTCTACTTAGATAGACTGTGAATTCATATTGGATCTTGTTTT-CCTC  849
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GCTTTCTACTTAGATAGACTGTGAATTCATATTGGATCTTGTTTTCCCTC  850

seq1  CTTGAAACTTTACAAGCCAGGATTTGTTGTTATTCTT-GGTTTTTGTTTT  898
      |||| |||||||||||||||||||||||||||||||| ||||||||||||
seq2  CTTG-AACTTTACAAGCCAGGATTTGTTGTTATTCTTGGGTTTTTGTTTT  899

seq1  TTTT-GGTTTTTTTCTG-AGACAGTCTTATGCAGTGTAAGCTTG-TCTCC  945
      |||| |||||||||||| |||||||||||||||||||||||||| |||||
seq2  TTTTGGGTTTTTTTCTGAAGACAGTCTTATGCAGTGTAAGCTTGTTCTCC  949

seq1  AATGTGCAGCACC-ACACCTGGGAAGGTTTTTTTCCTAAGGTTTTAGCAT  994
      ||||||||||||| ||||||||||| ||||||||||||| | ||||||||
seq2  AATGTGCAGCACCAACACCTGGGAA-GTTTTTTTCCTAAAG-TTTAGCAT  997

seq1  CCACA-CATTGCAAGTTTTTGAAAATGCAGGACTGTTCCATAGGCACTCA  1043
       |||| || |||| ||||||| ||||||| ||||||| ||||||||||||
seq2  -CACACCAATGCAGGTTTTTG-AAATGCAAGACTGTT-CATAGGCACTCA  1044

seq1  GCA  1046
      |||
seq2  GCA  1047