BAC Information

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BAC

Clone NameB6Ng01-299M23
Chromosome13 (Build37)
Map Location 70,116,841 - 70,307,432
singlet/doubletdoublet
Overlap geneEG620143, LOC100042291
Upstream geneAdcy2, LOC218332, Pols, A530095I07Rik, Srd5a1, Nsun2, LOC100042260, 3110006E14Rik, 4930547H16Rik, Med10
Downstream gene4930520P13Rik, EG633042, BC018507, EG620473, Adamts16, 8030423J24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-299M23.bB6Ng01-299M23.g
ACCGA094550GA094551
length1,0871,150
definitionB6Ng01-299M23.b B6Ng01-299M23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,116,841 - 70,117,919)(70,306,290 - 70,307,432)
sequence
gaattctctcttagaaagttcctctactttgcttactacaccccgtgtgt
ctctgctttactccttgcccaagggcacaagagcctggatctcctccaga
gagattcactgaaccctgatgtctgccgcgattgcccatggattgcctaa
acctaaggattgcctacagagcagttattcctcttggcttagagaatcct
ggctgattctgcggccacctgcagtcattccttagtatctgttctctcct
aggctggcttccccactctttctgatgtgagtagcttgagaagtttctac
atcattttttttcctacatattttagttctgctttttccctgatcaatac
tgccgtctgagtcttatctatcttcttacatttcatgataatcaggattt
agacataactgtcaatattttgcttagcaatagcctcagttaatcactca
gtttcctccacagcaaggttcaccttttacaaagccccagaacataacaa
aatcccaccatgcttctcacctcttacttacaaaaatgccttccctgtta
tccagtgtcatggccctcatgtccccactgcaatggctttctagccactt
tcctaacagcattctgtttaaaaccacttagtcctattctttgaagactg
aggctttgtttaagtccttcttcttcttcctcttcaatatctcctattag
gtttgagtattgtgctgagttcctaccctccagcatggtaatattaggaa
gtatggttttgtggagataattagggcatgaaaggttaccaccacaagag
ggactcttagggaactctccttcccactgggagaaggtaccacctgtgag
gcagcaagcagccctcatcaacaaccagaagtgctggtatctatatatgc
agaatcctgagaagcaatttgctgtttgtaaagtcccagacgatggtgct
ttgtatagaaatcctaaaaggactaagtcggcctacagatacaggcttta
tctcaaatacccaacacacctggggactggagttcaactacctgaattgg
aaaaagcaatggcctttttggtctacaggtccaaaga
gaattctgagactgtgaattgtttatttagaaagtttcccaactaaaggg
aagcattcatttattagtttaaagtgcctcagtatcccagaagacacaca
cctggaacagtgtctccttgacaggactatgtagttggagataagaattc
tgcctcattgtctacttactgtcttctgggcaaaggtaatttgtttagga
ggtttctttctgggtttatggtacttggacaaatgtatcagtaaattttt
atgaaatacttagaaaacttcacacagaaactccttcctacagaattgtg
aggaatgaagaaatggcgaacgttttaaccccctcagtgtctgagaggaa
cataattcataacacttggtggagaaatttgacttgatgagacacagaaa
ctataatcccgagacttggtactcagcttcacatgtgatctgtgactagc
cctggagaacggtgtggtgtgcagaagtataagtcgtttgctcagccgtc
acacacaacataacacagctgagggaggctggcaggatgcagctctccag
aactgtatgttgtatggcacagaagagataatactgatgtttaaaggagg
aagccatgtgcattgagctgcattttcaaatgtggaatgtatctgtcact
gaggtttcttatctaatgttggcaaagcagttgcttcaacctctgtttgc
tttcagactagacattacagcagctaggggtcttttctcactttacacct
aagaagtataatgctaatcttcattgtcaacttgatggcatttagaatca
catgcaccccccccccccaggcaagtcttagagtgtgtttcccaaactat
taagccaggaaaaaaaacaccctaaatataagtgctgcattcccatggat
agggtcccagaccaaaacaggggagaaatgaaggaacaagccgcatgcat
ctctctgactggagatggtgatgtgaccatctggtcctggtgacatggtg
accccttacattttctccactgaccacatcttcctgcaaggattggactc
cattctccaatcaatgagcgcataaaccgtcggttcctattttccccaaa
cctgctttcttccatccagttgcacggtagcatggaaggaacagttcctg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_70116841_70117919
seq2: B6Ng01-299M23.b_48_1134

seq1  GAATTCTCTCTTAGAAAGTTCCTCTACTTTGCTTACTACACCCCGTGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCTTAGAAAGTTCCTCTACTTTGCTTACTACACCCCGTGTGT  50

seq1  CTCTGCTTTACTCCTTGCCCAAGGGCACAAGAGCCTGGATCTCCTCCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCTTTACTCCTTGCCCAAGGGCACAAGAGCCTGGATCTCCTCCAGA  100

seq1  GAGATTCACTGAACCCTGATGTCTGCCGCGATTGCCCATGGATTGCCTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTCACTGAACCCTGATGTCTGCCGCGATTGCCCATGGATTGCCTAA  150

seq1  ACCTAAGGATTGCCTACAGAGCAGTTATTCCTCTTGGCTTAGAGAATCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAAGGATTGCCTACAGAGCAGTTATTCCTCTTGGCTTAGAGAATCCT  200

seq1  GGCTGATTCTGCGGCCACCTGCAGTCATTCCTTAGTATCTGTTCTCTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGATTCTGCGGCCACCTGCAGTCATTCCTTAGTATCTGTTCTCTCCT  250

seq1  AGGCTGGCTTCCCCACTCTTTCTGATGTGAGTAGCTTGAGAAGTTTCTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGGCTTCCCCACTCTTTCTGATGTGAGTAGCTTGAGAAGTTTCTAC  300

seq1  ATCATTTTTTTTCCTACATATTTTAGTTCTGCTTTTTCCCTGATCAATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTTTTTTCCTACATATTTTAGTTCTGCTTTTTCCCTGATCAATAC  350

seq1  TGCCGTCTGAGTCTTATCTATCTTCTTACATTTCATGATAATCAGGATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCGTCTGAGTCTTATCTATCTTCTTACATTTCATGATAATCAGGATTT  400

seq1  AGACATAACTGTCAATATTTTGCTTAGCAATAGCCTCAGTTAATCACTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATAACTGTCAATATTTTGCTTAGCAATAGCCTCAGTTAATCACTCA  450

seq1  GTTTCCTCCACAGCAAGGTTCACCTTTTACAAAGCCCCAGAACATAACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCTCCACAGCAAGGTTCACCTTTTACAAAGCCCCAGAACATAACAA  500

seq1  AATCCCACCATGCTTCTCACCTCTTACTTACAAAAATGCCTTCCCTGTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCACCATGCTTCTCACCTCTTACTTACAAAAATGCCTTCCCTGTTA  550

seq1  TCCAGTGTCATGGCCCTCATGTCCCCACTGCAATGGCTTTCTAGCCACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTGTCATGGCCCTCATGTCCCCACTGCAATGGCTTTCTAGCCACTT  600

seq1  TCCTAACAGCATTCTGTTTAAAACCACTTAGTCCTATTCTTTGAAGACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAACAGCATTCTGTTTAAAACCACTTAGTCCTATTCTTTGAAGACTG  650

seq1  AGGCTTTGTTTAAGTCCTTCTTCTTCTTCCTCTTCAATATCTCCTATTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTTGTTTAAGTCCTTCTTCTTCTTCCTCTTCAATATCTCCTATTAG  700

seq1  GTTTGAGTATTGTGCTGAGTTCCTACCCTCCAGCATGGTAATATTAGGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAGTATTGTGCTGAGTTCCTACCCTCCAGCATGGTAATATTAGGAA  750

seq1  GTATGGTTTTGTGGAGATAATTAGGGCATGAAAGGTTACCACCACAAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGGTTTTGTGGAGATAATTAGGGCATGAAAGGTTACCACCACAAGAG  800

seq1  GGACTCTTAGGGAACTCTCCTTCCCACTGGGAGAAGGTACCACCTGTGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCTTAGGGAACTCTCCTTCCCACTGGGAGAAGGTACCACCTGTGAG  850

seq1  GCAGCAAGCAGCCCTCATCAACAACCAGAAGTGCTGGTATCTATATATGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAAGCAGCCCTCATCAACAACCAGAAGTGCTGGTATCTATATATGC  900

seq1  AGAATCCTGAGAAGCAAATTTGCTGTTTGTAAAGTCCCAGACGATGGTGC  950
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AGAATCCTGAGAAGC-AATTTGCTGTTTGTAAAGTCCCAGACGATGGTGC  949

seq1  TTTGTTATAGAAATCCTAAAA-GACTAAGTC-GCCTACAGATAACAGGC-  997
      |||| |||||||||||||||| ||||||||| |||||||||| |||||| 
seq2  TTTG-TATAGAAATCCTAAAAGGACTAAGTCGGCCTACAGAT-ACAGGCT  997

seq1  TTATCTCAAATA-CCAACACA-CTGGGGACTGAGTTTCAACTTACTGAAT  1045
      |||||||||||| |||||||| ||||||||||   |||||||  ||||||
seq2  TTATCTCAAATACCCAACACACCTGGGGACTGGAGTTCAACTACCTGAAT  1047

seq1  TGG-AAAAGC-ATGGC--TTTTGGTCTACAG--TCAAAGA  1079
      ||| |||||| |||||  |||||||||||||   ||||||
seq2  TGGAAAAAGCAATGGCCTTTTTGGTCTACAGGTCCAAAGA  1087

seq1: chr13_70306290_70307432
seq2: B6Ng01-299M23.g_67_1216 (reverse)

seq1  CAGGAACTG-TCCTTCATTGCTTCTGTGGCCAAGT-GATGGAAGAAAGCA  48
      ||||||||| ||||||  |||| | |||  ||| | ||||||||||||||
seq2  CAGGAACTGTTCCTTCCATGCTACCGTG--CAACTGGATGGAAGAAAGCA  48

seq1  GTTTGGGGGAAATAAGGA--CGACGGGTTTATGCGGCTCA-TGATTTGAA  95
      | || |||||||  ||||  |||| ||||||||| ||||| ||||| || 
seq2  GGTTTGGGGAAAATAGGAACCGAC-GGTTTATGC-GCTCATTGATTGGAG  96

seq1  GATGGAGTCC-ATCTTGGCAGGGAAGATGTGGTCAGT-GAG-AAATGT-A  141
       ||||||||| ||| | ||| |||||||||||||||| ||| |||||| |
seq2  AATGGAGTCCAATCCTTGCA-GGAAGATGTGGTCAGTGGAGAAAATGTAA  145

seq1  GGGGTCACATGGTCA-CAGGACCAGATGGTCACATCA-CATCTCCAGTCA  189
      ||||||||   |||| ||||||||||||||||||||| ||||||||||||
seq2  GGGGTCACCATGTCACCAGGACCAGATGGTCACATCACCATCTCCAGTCA  195

seq1  GAGAGATGCATGCGGCTTGTTCCTTCATTTTCTCCCCTGTTTTGGTCTGG  239
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GAGAGATGCATGCGGCTTGTTCCTTCA-TTTCTCCCCTGTTTTGGTCTGG  244

seq1  GACCCTATCCAT-GGAATGCAGCACTTATATTTAGGGTGTTTTTTTTCCT  288
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GACCCTATCCATGGGAATGCAGCACTTATATTTAGGGTGTTTTTTTTCCT  294

seq1  GGCTTAATAGTTTGGGAAACACACTCTAAGACTTGCCT-GGGGGGGGGGG  337
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GGCTTAATAGTTTGGGAAACACACTCTAAGACTTGCCTGGGGGGGGGGGG  344

seq1  TGCATGTGATTCTAAATGCCATCAAGTTGACAATGAAGATTAGCATTATA  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGTGATTCTAAATGCCATCAAGTTGACAATGAAGATTAGCATTATA  394

seq1  CTTCTTAGGTGTAAAGTGAGAAAAGACCCCTAGCTGCTGTAATGTCTAGT  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTAGGTGTAAAGTGAGAAAAGACCCCTAGCTGCTGTAATGTCTAGT  444

seq1  CTGAAAGCAAACAGAGGTTGAAGCAACTGCTTTGCCAACATTAGATAAGA  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAGCAAACAGAGGTTGAAGCAACTGCTTTGCCAACATTAGATAAGA  494

seq1  AACCTCAGTGACAGATACATTCCACATTTGAAAATGCAGCTCAATGCACA  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCAGTGACAGATACATTCCACATTTGAAAATGCAGCTCAATGCACA  544

seq1  TGGCTTCCTCCTTTAAACATCAGTATTATCTCTTCTGTGCCATACAACAT  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTCCTCCTTTAAACATCAGTATTATCTCTTCTGTGCCATACAACAT  594

seq1  ACAGTTCTGGAGAGCTGCATCCTGCCAGCCTCCCTCAGCTGTGTTATGTT  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTCTGGAGAGCTGCATCCTGCCAGCCTCCCTCAGCTGTGTTATGTT  644

seq1  GTGTGTGACGGCTGAGCAAACGACTTATACTTCTGCACACCACACCGTTC  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGACGGCTGAGCAAACGACTTATACTTCTGCACACCACACCGTTC  694

seq1  TCCAGGGCTAGTCACAGATCACATGTGAAGCTGAGTACCAAGTCTCGGGA  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGGCTAGTCACAGATCACATGTGAAGCTGAGTACCAAGTCTCGGGA  744

seq1  TTATAGTTTCTGTGTCTCATCAAGTCAAATTTCTCCACCAAGTGTTATGA  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGTTTCTGTGTCTCATCAAGTCAAATTTCTCCACCAAGTGTTATGA  794

seq1  ATTATGTTCCTCTCAGACACTGAGGGGGTTAAAACGTTCGCCATTTCTTC  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGTTCCTCTCAGACACTGAGGGGGTTAAAACGTTCGCCATTTCTTC  844

seq1  ATTCCTCACAATTCTGTAGGAAGGAGTTTCTGTGTGAAGTTTTCTAAGTA  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTCACAATTCTGTAGGAAGGAGTTTCTGTGTGAAGTTTTCTAAGTA  894

seq1  TTTCATAAAAATTTACTGATACATTTGTCCAAGTACCATAAACCCAGAAA  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATAAAAATTTACTGATACATTTGTCCAAGTACCATAAACCCAGAAA  944

seq1  GAAACCTCCTAAACAAATTACCTTTGCCCAGAAGACAGTAAGTAGACAAT  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCTCCTAAACAAATTACCTTTGCCCAGAAGACAGTAAGTAGACAAT  994

seq1  GAGGCAGAATTCTTATCTCCAACTACATAGTCCTGTCAAGGAGACACTGT  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGAATTCTTATCTCCAACTACATAGTCCTGTCAAGGAGACACTGT  1044

seq1  TCCAGGTGTGTGTCTTCTGGGATACTGAGGCACTTTAAACTAATAAATGA  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGTGTGTGTCTTCTGGGATACTGAGGCACTTTAAACTAATAAATGA  1094

seq1  ATGCTTCCCTTTAGTTGGGAAACTTTCTAAATAAACAATTCACAGTCTCA  1137
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTCCCTTTAGTTGGGAAACTTTCTAAATAAACAATTCACAGTCTCA  1144

seq1  GAATTC  1143
      ||||||
seq2  GAATTC  1150