BAC Information

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BAC

Clone NameB6Ng01-302D17
Chromosome13 (Build37)13 (Build37)
Map Location 66,626,023 - 66,626,86766,521,184 - 66,522,166
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC665777, EG628648, LOC665809, LOC100042404, LOC628722, LOC665851, Vmn2r-ps99, LOC628794, EG665897, LOC100041855, EG628746, LOC100042434, LOC100041892, EG665974, LOC100041915, 2410141K09Rik, C330014B19Rik
Downstream geneMzf6d, Vmn2r-ps106, LOC666027, LOC100042492, LOC100041947, EG382769, LOC666052, EG432768, LOC666061, Uqcrb, Mterfd1, Ptdss1, Zfp712, Zfp708, Zfp759, Rsl1, LOC674699, Zfp455, Zfp458, Zfp457, A230042K10Rik, E130120F12Rik, Zfp456, 2810487A22Rik, Zfp459, C330011K17Rik, LOC666098, 9630025I21Rik, Zfp817, Zfp87
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-302D17.bB6Ng01-302D17.g
ACCGA096338GA096339
length1,0181,002
definitionB6Ng01-302D17.b B6Ng01-302D17.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(66,626,023 - 66,626,867)(66,521,184 - 66,522,166)
sequence
gaattctgggtatatgatgatctgcctaactcttttgtttgttctttgat
ttttgagtaaatgtaattatttttctgtgtgcatgaatatgaatatcatg
tgtgcctcatttttactgttgtcagtaggtggtatcagaactcctgatct
tgatgtaatgggtagttgttggtccccataaatgctaaatattgaccaca
gttatgtggaagaccagtaagaactttccacagctgagctatctctcctg
ccctatgttgcatatttgtgatcagcatttatcctactagtattttaatt
ggtccatttgtaattctttaaaaattcattctcttttagcaaaattttat
taatgttgcaatttaaactggtgtaattcatgtttctttaacatacagaa
ctgccgttaatgtataattctttgtaggaacttcagtgcagaactatggg
ttctttctatcatttctgtttccttgggtgctatatgcagggggagtgag
agtcttaatgtgtaacttttgctgtcctggaatgggttgcatagatgatg
caggcctccagcttgaggaaatacaccttcctgtgcctctgattaaagtc
atgagcaaatacctccatcttgtccaatatttttgtagttagtaattgtt
cgtacagcttctcagatgtgggcttggtactgttgatctgtatccccttg
caatctccctctcaattggcatttcccttgcaaggctatctcctaggcaa
aaggttcaacagcaacagaggtgaacattataattcaatttccttctaaa
aagacatggtgattagaatacaacttctgtgtcagtaataaggagtgatg
ttagtatcatgctttgtgttgtacacatttctgggatattttaggatgca
atgacttttgacgatgtgcatgtgaacttcactaaagaagagtggaaatt
tgctggacctttcccagatgaatctctacaaagacgtgatgttggagacc
tactggaaccttacttct
gaattcactgacctcactgtggtgaaggtcttgtgggagacatttccatt
agtgatttttctcacttaatgaaacacagtcatttcataaggaaacggtc
ttttcacatacatttacaaagccttattttgcaggcacaatctgaatctc
aatgtcctttccatagaatgttcccgtctctgtatgttatctggtattct
tagcatctccctagtacattggaaagctatcccaaagtgcagcgcttctg
tgctatcatatgcattactgtcacggtgcttctcactctgctaacattca
ttcttctttctcttttcaaatcagtgccttttattgcttcaggaagctat
gagatttcaaatcccaacagaggcaatttaccatttaggtgatgtcttag
attctgttgcagtaaaatccaccatagccaaagaaacatgtgagaaaagt
gtttatttacttatgtaccttgggcacagtatattgtgtgaagccaaggc
tttatactctacagaaaggataaactggatgagaaagaaattaggggaac
aacacccttcacaataggcacaaataatatgaaataccttggtgtgactc
taactaaggaagtgaaagatctgtatgataagaacttcaagtctctgaag
aaagaaatcaaagaagatctcagaagatggaaagatctcccatgctcatg
gattggcaggatccatatagtaaaaatggctatcatgccaaaattaatct
gagattcatgcaatccccattaaaattccaactcaattcttcacagagtt
agaaaaggcaatttgcaaattcatctggaataacaaaaaaaatctaggat
agcaaaagctattcccaaagaaaaaagaaccctctggtggaatcaccgtg
cctgacctcaagctgtactacagagcaatttgtgaataaaaacctgcatg
gtactggtacagtgacagacagtagaccaatgggaatagaatttgaagac
cc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_66626023_66626867
seq2: B6Ng01-302D17.b_46_885

seq1  GAATTCTGGGTATATGATGATCTGCCTAACTCTTCTGTTTGTTCTTTGAT  50
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GAATTCTGGGTATATGATGATCTGCCTAACTCTTTTGTTTGTTCTTTGAT  50

seq1  TTTTGAGTAAATGTAATTATTTTTCTGTGTGCATGAATATGAATATCATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGTAAATGTAATTATTTTTCTGTGTGCATGAATATGAATATCATG  100

seq1  CGTGCCTCATTTTTACTGTTGTCAGTAGGTGGTATCAAAACTCCTGATCT  150
       |||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TGTGCCTCATTTTTACTGTTGTCAGTAGGTGGTATCAGAACTCCTGATCT  150

seq1  TGAAGTAATGGGTAGTTGTTGGTCCCCATAAATGCTAAATATTGACCACA  200
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTAATGGGTAGTTGTTGGTCCCCATAAATGCTAAATATTGACCACA  200

seq1  ATTATGTGGAAGACCAGCAAGAGCTTTCCACAGCTGAGCTATCTTTCCTG  250
       |||||||||||||||| |||| ||||||||||||||||||||| |||||
seq2  GTTATGTGGAAGACCAGTAAGAACTTTCCACAGCTGAGCTATCTCTCCTG  250

seq1  CCCTATGTTGCATATTTGTTATCAACATTTATACTACTAGTATTTTAATT  300
      ||||||||||||||||||| |||| ||||||| |||||||||||||||||
seq2  CCCTATGTTGCATATTTGTGATCAGCATTTATCCTACTAGTATTTTAATT  300

seq1  GGTCCATTTGTAACTCTTTAAAAATTCATTCTCTTTTAGCAAAATTTTAT  350
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GGTCCATTTGTAATTCTTTAAAAATTCATTCTCTTTTAGCAAAATTTTAT  350

seq1  TAATGTTGCAATTTAAACTGGTGTAATTCATGTTTCTTTAACATGGATAC  400
      ||||||||||||||||||||||||||||||||||||||||||    ||||
seq2  TAATGTTGCAATTTAAACTGGTGTAATTCATGTTTCTTTAAC----ATAC  396

seq1  AGAACTGCCGTTAATGTATAATTCTTTGTAGGAACTTCAGTGCAGAACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTGCCGTTAATGTATAATTCTTTGTAGGAACTTCAGTGCAGAACTA  446

seq1  TGGGTTCTTTCTATCATTTCTGTTTCCTTGGGTGCTATTTGCAGGGGGAG  500
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TGGGTTCTTTCTATCATTTCTGTTTCCTTGGGTGCTATATGCAGGGGGAG  496

seq1  AGAGAGTCTTAATGTGTAACTTTTGCTGTCCTGGAATGGGTTGCATAGAT  550
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGTCTTAATGTGTAACTTTTGCTGTCCTGGAATGGGTTGCATAGAT  546

seq1  GATGCAGGCCTCCAGCTTGAGGAAATACACCGTCCTGTGCCTCTGATTAA  600
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GATGCAGGCCTCCAGCTTGAGGAAATACACCTTCCTGTGCCTCTGATTAA  596

seq1  AGTCATGAGCAAATACCTCCATCTTGTCCAATATTTTCGTAGTTAGTAAT  650
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGTCATGAGCAAATACCTCCATCTTGTCCAATATTTTTGTAGTTAGTAAT  646

seq1  TGTTCGTACAGCTTCTCAGATGTGGGCTTGGTACTGTTGATCTGTATCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCGTACAGCTTCTCAGATGTGGGCTTGGTACTGTTGATCTGTATCCC  696

seq1  CTTGCAATCTCCCTCTCAATTGGCATTTCCCTTGCAAGGCTATATCCTAG  750
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CTTGCAATCTCCCTCTCAATTGGCATTTCCCTTGCAAGGCTATCTCCTAG  746

seq1  GCAAAAGGTTCAACAGCAACATAGGTGAACATTATAATTCAATTTCCTTG  800
      ||||||||||||||||||||| ||||||||||||||||||||||||||| 
seq2  GCAAAAGGTTCAACAGCAACAGAGGTGAACATTATAATTCAATTTCCTTC  796

seq1  TAAAAAGACATGGTGATTATAATACAACTTCTGTGTCAGGTAATA  845
      ||||||||||||||||||| |||||||||||||||||| ||||||
seq2  TAAAAAGACATGGTGATTAGAATACAACTTCTGTGTCA-GTAATA  840

seq1: chr13_66521184_66522166
seq2: B6Ng01-302D17.g_67_1054

seq1  GAATTCACTGACCTCACTGTGGTGAAGGTCTTGTGGGAGACATTTCCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGACCTCACTGTGGTGAAGGTCTTGTGGGAGACATTTCCATT  50

seq1  AGTGATTTTTCTCACTTAATGAAACACAGTCATTTCATAAGGAAACGGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATTTTTCTCACTTAATGAAACACAGTCATTTCATAAGGAAACGGTC  100

seq1  TTTTCACATACATTTACAAAGCCTTATTTTGCAGGCACAATCTGAATCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACATACATTTACAAAGCCTTATTTTGCAGGCACAATCTGAATCTC  150

seq1  AATGTCCTTTCCATAGAATGTTCCCGTCTCTGTATGTTATCTGGTATTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCCTTTCCATAGAATGTTCCCGTCTCTGTATGTTATCTGGTATTCT  200

seq1  TAGCATCTCCCTAGTACATTGGAAAGCTATCCCAAAGTGCAGCGCTTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATCTCCCTAGTACATTGGAAAGCTATCCCAAAGTGCAGCGCTTCTG  250

seq1  TGCTATCATATGCATTACTGTCACGGTGCTTCTCACTCTGCTAACATTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATCATATGCATTACTGTCACGGTGCTTCTCACTCTGCTAACATTCA  300

seq1  TTCTTCTTTCTCTTTTCAAATCAGTGCCTTTTATTGCTTCAGGAAGCTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTTTCTCTTTTCAAATCAGTGCCTTTTATTGCTTCAGGAAGCTAT  350

seq1  GAGATTTCAAATCCCAACAGAGGCAATTTACCATTTAGGTGATGTCTTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTTCAAATCCCAACAGAGGCAATTTACCATTTAGGTGATGTCTTAG  400

seq1  ATTCTGTTGCAGTAAAATCCACCATAGCCAAAGAAACATGTGAGAAAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTTGCAGTAAAATCCACCATAGCCAAAGAAACATGTGAGAAAAGT  450

seq1  GTTTATTTACTTATGTACCTTGGGCACAGTATATTGTGTGAAGCCAAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATTTACTTATGTACCTTGGGCACAGTATATTGTGTGAAGCCAAGGC  500

seq1  TTTATACTCTACAGAAAGGATAAACTGGATGAGAAAGAAATTAGGGGAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATACTCTACAGAAAGGATAAACTGGATGAGAAAGAAATTAGGGGAAC  550

seq1  AACACCCTTCACAATAGGCACAAATAATATGAAATACCTTGGTGTGACTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCCTTCACAATAGGCACAAATAATATGAAATACCTTGGTGTGACTC  600

seq1  TAACTAAGGAAGTGAAAGATCTGTATGATAAGAACTTCAAGTCTCTGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTAAGGAAGTGAAAGATCTGTATGATAAGAACTTCAAGTCTCTGAAG  650

seq1  AAAGAAATCAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTCATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAATCAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTCATG  700

seq1  GATTGGCAGGATCCATATAGTAAAAATGGCTATCATGCCAAAATTAATCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGGCAGGATCCATATAGTAAAAATGGCTATCATGCCAAAATTAATCT  750

seq1  GAGATTCATGCAATCCCCATTAAAATTCCAACTCAATTCTTCACAGAGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTCATGCAATCCCCATTAAAATTCCAACTCAATTCTTCACAGAGTT  800

seq1  AGAAAAGGCAATTTGCAAATTCATCTGGAATAACAAAAAAAATCTAGGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGGCAATTTGCAAATTCATCTGGAATAACAAAAAAAATCTAGGAT  850

seq1  AGCAAAAGCTATTCCCAAAGAAAAAAGAA-CCTCTGGTGGAATCACCGTG  899
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AGCAAAAGCTATTCCCAAAGAAAAAAGAACCCTCTGGTGGAATCACCGTG  900

seq1  CCTGACCTCAAGCTGTACTACAGAGCAA-TTGTGA--TAAAACCTGCATG  946
      |||||||||||||||||||||||||||| ||||||   ||||||||||||
seq2  CCTGACCTCAAGCTGTACTACAGAGCAATTTGTGAATAAAAACCTGCATG  950

seq1  GTACTGGTACAGTGACAGACAGTAGACCAAT-GGAATA  983
      ||||||||||||||||||||||||||||||| ||||||
seq2  GTACTGGTACAGTGACAGACAGTAGACCAATGGGAATA  988