BAC Information

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BAC

Clone NameB6Ng01-302E20
Chromosome13 (Build37)
Map Location 24,572,509 - 24,720,869
singlet/doubletdoublet
Overlap gene5830431A10Rik, 6330500D04Rik
Upstream geneBtn2a2, Hist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be, Hist1h1e, Hist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2, Slc17a3, Slc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn, Lrrc16, LOC100042017, Cmah
Downstream geneLOC666145, Gmnn, LOC100040800, BC005537, Them2, Ttrap, D130043K22Rik, Aldh5a1, Gpld1, Mrs2l, LOC675430, Dcdc2a, Nrsn1, Tpi-rs8, LOC214973
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-302E20.bB6Ng01-302E20.g
ACCGA096385GA096386
length1,121998
definitionB6Ng01-302E20.b B6Ng01-302E20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,719,751 - 24,720,869)(24,572,509 - 24,573,505)
sequence
gaattcaactcccacagctgaagacctggtgtcctggacgttcagatctg
attctcagacatatgggcctcttctggaaccagaaccagaacgcactggc
cttttgtcccgcagtagatacattattcaactcaagtgcttggtgatgga
aaaatactggactgtctatttcagaatttgggagagttcctggtatggta
ataggttcttttaattttttttctaggctacaaagaggaagggggctata
gctcagcagtaaagtacctgcctagagttctccttaaggtcctcagtttg
agccctagcactgaagaagtaacatgctccaatacaaagccctgctgcaa
aggaccgtcttacagaaagattacaataaagagaaattgaaaacagcatg
tggggagttcaagaactgggagacacccctgcttccttctttgaggtaga
ataaatcaataacccctgtaggtctcctccagcagagagcctgtgaggta
cagccttggacccaaaaggccgaagagcaagcactagaactgggtatgta
gagcatcaaagactgagagtggtcagaggcagtttgcatacacacttcta
taattagcaagggtatgacacacagcttccagtgatacgacactctcacg
tctgcaggtgaaaactcctatacctgcacaaggtattctagccctttctc
cctcgactttccctgaccctccctggagagtttccaacagttaacattgc
attgctgaactcctggtcttctggaacagtctatagagatttctatagct
tgaattcccacaaactagggctacatctatggataatctttatgcatatt
tatgctgctttacagtcaacatttcaacagacatttcttgagtctccact
atttttgagtatatagagggacttcccaaagccatcccaatttctataag
cttgactgtccatatctgattctgggtctcctcagcccacgctggctccc
tagccccaccagctctctcaacagccacaatcatctcaagaaaccaaaga
acaattgatacttcagatattccaggcccaactgtctcattcttgcctac
ttcattcccacggccacatat
gaattcctgaggctgggtaactgaactgtggcttttgctgacatcggctc
agtcttccaaggcatggacaggcctgtgcgtatgaccgccctggagtctg
tatttacataatttgcatatgctcctatgcctttgctgattttccatgga
gttccacaacactgattctgcaaagactcctccctctgctatttgcaata
tagactaagttctgatcacattcttgctacgataaaatatcctgacaaag
gcgacttcagagcaggaggcttgtttgtctacagtcacaagctacagttc
tccgtgttggaacagtgaagccaggaactggcagcagcctgtcacgtcca
cagtgagagtagagcgggaacaaatggatgcctgcttttgctcagcaccc
tcttgacatttatctgctccccgccccaaaccctgggaacagtgacaccc
acaataggcagatctccccacctcaattaatgggatcagaatgattgccc
cacagatatgcccacaggccaacctcactcttctgcacagtccctctctg
agactctgtttccaggtagatctaggatgtgccaagttgacaagcagacc
tgaccatcacagactatttctctcttaaaataccttcagaggttgggata
tagttcaacagtactacatcagtctatataagccccaggccatcccccaa
aaacaccaccactgtgaatacactctctcgagtgcacacacacgtacaca
cgtgcacacatgcacacacgaatgtacccatgatttcctaaatgccttaa
gggtaatcatattttatgaaaaaaaaaaaacctaacaaatacttttaaaa
tatacagtacttataccaatcacaagacattaaattacaaaaaatataag
actctgtttgacatgttattttgtttttaattaataaatgtgtttctttt
agatagtatatttatttgtttgtttgtttgtttgtttatgtgtttgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_24719751_24720869
seq2: B6Ng01-302E20.b_47_1167 (reverse)

seq1  ATATGTGG-CGTGGG-ATG-AGTAGGCAAGAATGAGACCAAGTTGGG-CT  46
      |||||||| |||||| ||| ||||||||||||||||||  ||||||| ||
seq2  ATATGTGGCCGTGGGAATGAAGTAGGCAAGAATGAGAC--AGTTGGGCCT  48

seq1  TGAATATCTTGAAAGGTATC-ATTGTTCTTT-GTTTCTTGAGATGATGGT  94
       ||||||| ||||  ||||| |||||||||| ||||||||||||||| ||
seq2  GGAATATC-TGAA--GTATCAATTGTTCTTTGGTTTCTTGAGATGATTGT  95

seq1  GGCTGTTGAGAGAGCTGGTGGGGGCTAGGGGAGCCAGCGTGGGCTGAGGA  144
      ||||||||||||||||||| ||||||| ||||||||||||||||||||||
seq2  GGCTGTTGAGAGAGCTGGT-GGGGCTA-GGGAGCCAGCGTGGGCTGAGGA  143

seq1  GA-CCAGAATCAGATATGGACAGTCAAGCTTATAGAAATTGGGATGGCTT  193
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCAGAATCAGATATGGACAGTCAAGCTTATAGAAATTGGGATGGCTT  193

seq1  TGGGAAGT-CCTCTATATACTC-AAAATAGTGGAGACTCAAGAAATGTCT  241
      |||||||| ||||||||||||| |||||||||||||||||||||||||||
seq2  TGGGAAGTCCCTCTATATACTCAAAAATAGTGGAGACTCAAGAAATGTCT  243

seq1  GTTGAAATGTTGACTGTAAAGCAGCATAAATATGCATAAAGATTATCCAT  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAAATGTTGACTGTAAAGCAGCATAAATATGCATAAAGATTATCCAT  293

seq1  AGATGTAGCCCTAGTTTGTGGGAATTCAAGCTATAGAAATCTCTATAGAC  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTAGCCCTAGTTTGTGGGAATTCAAGCTATAGAAATCTCTATAGAC  343

seq1  TGTTCCAGAAGACCAGGAGTTCAGCAATGCAATGTTAACTGTTGGAAACT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCAGAAGACCAGGAGTTCAGCAATGCAATGTTAACTGTTGGAAACT  393

seq1  CTCCAGGGAGGGTCAGGGAAAGTCGAGGGAGAAAGGGCTAGAATACCTTG  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGGGAGGGTCAGGGAAAGTCGAGGGAGAAAGGGCTAGAATACCTTG  443

seq1  TGCAGGTATAGGAGTTTTCACCTGCAGACGTGAGAGTGTCGTATCACTGG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGTATAGGAGTTTTCACCTGCAGACGTGAGAGTGTCGTATCACTGG  493

seq1  AAGCTGTGTGTCATACCCTTGCTAATTATAGAAGTGTGTATGCAAACTGC  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGTGTGTCATACCCTTGCTAATTATAGAAGTGTGTATGCAAACTGC  543

seq1  CTCTGACCACTCTCAGTCTTTGATGCTCTACATACCCAGTTCTAGTGCTT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGACCACTCTCAGTCTTTGATGCTCTACATACCCAGTTCTAGTGCTT  593

seq1  GCTCTTCGGCCTTTTGGGTCCAAGGCTGTACCTCACAGGCTCTCTGCTGG  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTCGGCCTTTTGGGTCCAAGGCTGTACCTCACAGGCTCTCTGCTGG  643

seq1  AGGAGACCTACAGGGGTTATTGATTTATTCTACCTCAAAGAAGGAAGCAG  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGACCTACAGGGGTTATTGATTTATTCTACCTCAAAGAAGGAAGCAG  693

seq1  GGGTGTCTCCCAGTTCTTGAACTCCCCACATGCTGTTTTCAATTTCTCTT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTCTCCCAGTTCTTGAACTCCCCACATGCTGTTTTCAATTTCTCTT  743

seq1  TATTGTAATCTTTCTGTAAGACGGTCCTTTGCAGCAGGGCTTTGTATTGG  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTAATCTTTCTGTAAGACGGTCCTTTGCAGCAGGGCTTTGTATTGG  793

seq1  AGCATGTTACTTCTTCAGTGCTAGGGCTCAAACTGAGGACCTTAAGGAGA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGTTACTTCTTCAGTGCTAGGGCTCAAACTGAGGACCTTAAGGAGA  843

seq1  ACTCTAGGCAGGTACTTTACTGCTGAGCTATAGCCCCCTTCCTCTTTGTA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTAGGCAGGTACTTTACTGCTGAGCTATAGCCCCCTTCCTCTTTGTA  893

seq1  GCCTAGAAAAAAAATTAAAAGAACCTATTACCATACCAGGAACTCTCCCA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGAAAAAAAATTAAAAGAACCTATTACCATACCAGGAACTCTCCCA  943

seq1  AATTCTGAAATAGACAGTCCAGTATTTTTCCATCACCAAGCACTTGAGTT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTGAAATAGACAGTCCAGTATTTTTCCATCACCAAGCACTTGAGTT  993

seq1  GAATAATGTATCTACTGCGGGACAAAAGGCCAGTGCGTTCTGGTTCTGGT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAATGTATCTACTGCGGGACAAAAGGCCAGTGCGTTCTGGTTCTGGT  1043

seq1  TCCAGAAGAGGCCCATATGTCTGAGAATCAGATCTGAACGTCCAGGACAC  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAAGAGGCCCATATGTCTGAGAATCAGATCTGAACGTCCAGGACAC  1093

seq1  CAGGTCTTCAGCTGTGGGAGTTGAATTC  1119
      ||||||||||||||||||||||||||||
seq2  CAGGTCTTCAGCTGTGGGAGTTGAATTC  1121

seq1: chr13_24572509_24573505
seq2: B6Ng01-302E20.g_67_1064

seq1  GAATTCCTGAGGCTGGGTAACTGAACTGTGGCTTTTGCTGACATCGGCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGAGGCTGGGTAACTGAACTGTGGCTTTTGCTGACATCGGCTC  50

seq1  AGTCTTCCAAGGCATGGACAGGCCTGTGCGTATGACCGCCCTGGAGTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTCCAAGGCATGGACAGGCCTGTGCGTATGACCGCCCTGGAGTCTG  100

seq1  TATTTACATAATTTGCATATGCTCCTATGCCTTTGCTGATTTTCCATGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTACATAATTTGCATATGCTCCTATGCCTTTGCTGATTTTCCATGGA  150

seq1  GTTCCACAACACTGATTCTGCAAAGACTCCTCCCTCTGCTATTTGCAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCACAACACTGATTCTGCAAAGACTCCTCCCTCTGCTATTTGCAATA  200

seq1  TAGACTAAGTTCTGATCACATTCTTGCTACGATAAAATATCCTGACAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTAAGTTCTGATCACATTCTTGCTACGATAAAATATCCTGACAAAG  250

seq1  GCGACTTCAGAGCAGGAGGCTTGTTTGTCTACAGTCACAAGCTACAGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGACTTCAGAGCAGGAGGCTTGTTTGTCTACAGTCACAAGCTACAGTTC  300

seq1  TCCGTGTTGGAACAGTGAAGCCAGGAACTGGCAGCAGCCTGTCACGTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTGTTGGAACAGTGAAGCCAGGAACTGGCAGCAGCCTGTCACGTCCA  350

seq1  CAGTGAGAGTAGAGCGGGAACAAATGGATGCCTGCTTTTGCTCAGCACCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAGAGTAGAGCGGGAACAAATGGATGCCTGCTTTTGCTCAGCACCC  400

seq1  TCTTGACATTTATCTGCTCCCCGCCCCAAACCCTGGGAACAGTGACACCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGACATTTATCTGCTCCCCGCCCCAAACCCTGGGAACAGTGACACCC  450

seq1  ACAATAGGCAGATCTCCCCACCTCAATTAATGGGATCAGAATGATTGCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAGGCAGATCTCCCCACCTCAATTAATGGGATCAGAATGATTGCCC  500

seq1  CACAGATATGCCCACAGGCCAACCTCACTCTTCTGCACAGTCCCTCTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGATATGCCCACAGGCCAACCTCACTCTTCTGCACAGTCCCTCTCTG  550

seq1  AGACTCTGTTTCCAGGTAGATCTAGGATGTGCCAAGTTGACAAGCAGACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCTGTTTCCAGGTAGATCTAGGATGTGCCAAGTTGACAAGCAGACC  600

seq1  TGACCATCACAGACTATTTCTCTCTTAAAATACCTTCAGAGGTTGGGATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCATCACAGACTATTTCTCTCTTAAAATACCTTCAGAGGTTGGGATA  650

seq1  TAGTTCAACAGTACTACATCAGTCTATATAAGCCCCAGGCCATCCCCCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCAACAGTACTACATCAGTCTATATAAGCCCCAGGCCATCCCCCAA  700

seq1  AAACACCACCACTGTGAATACACTCTCTCGAGTGCACACACACGTACACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACCACCACTGTGAATACACTCTCTCGAGTGCACACACACGTACACA  750

seq1  CGTGCACACATGCACACACGAATGTACCCATGATTTCCTAAATGCCTTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCACACATGCACACACGAATGTACCCATGATTTCCTAAATGCCTTAA  800

seq1  GGGTAATCATATTTTATG-AAAAAAAAAAACCTAACAAATAC-TTTAAAA  848
      |||||||||||||||||| ||||||||||||||||||||||| |||||||
seq2  GGGTAATCATATTTTATGAAAAAAAAAAAACCTAACAAATACTTTTAAAA  850

seq1  TATACAGTACTTATACCAATCACAAGACATTAAATTACAAAAAATATAAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAGTACTTATACCAATCACAAGACATTAAATTACAAAAAATATAAG  900

seq1  ACTCTGTTTGACATGTTATTTTGTTTTTAATTAATAAATGTGTTTCTTTT  948
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ACTCTGTTTGACATGTTATTTTGTTTTTAATTAATAAATGTGTTTC-TTT  949

seq1  TAGATAGTATATTTATTTGTTTGTTTGTTTGTTTGTTTATGTGTTTGTG  997
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAGTATATTTATTTGTTTGTTTGTTTGTTTGTTTATGTGTTTGTG  998