BAC Information

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BAC

Clone NameB6Ng01-302N16
Chromosome13 (Build37)
Map Location 113,847,558 - 113,960,981
singlet/doubletdoublet
Overlap geneCdc20b, Gzma, 1700084D21Rik
Upstream geneLOC100040716, LOC100041161, LOC100041175, Ankrd55, LOC100040725, Il6st, Il31ra, LOC100041240, Ddx4, 9130023D20Rik, Ppap2a, LOC100041282, Skiv2l2, Dhx29, LOC667756, Ccnu, EG622408, EG622422, 2310016C16Rik
Downstream geneGzmk, Esm1, BC067074, LOC100040888, Snag1, Hspb3, EG632832, LOC622701, LOC100040927, Arl15, A430090L17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-302N16.bB6Ng01-302N16.g
ACCGA096799GA096800
length1,127866
definitionB6Ng01-302N16.b B6Ng01-302N16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,847,558 - 113,848,681)(113,960,117 - 113,960,981)
sequence
gaattcactatgtagttcaggcctcaaacttgccacaatccttccacctc
agccttccaagatgacaggtgtgagccagtgtgccaagctcagcgagctt
cctaagacacatgctcagtagtgccagcctcttcctgaggtactatggtt
ctgaggactgaaaagggacccaaatctttataaaactgaggaatttccca
cacaataacaagtgtcaaccccagaattacctgactgtggaacggggaga
ctcaggagtgtaggaagtcttttgtattcagtgtaattgaggaaatttgg
atattcattgttttagaggaatttcttgctgcaattaggaattcctggct
ctttctgagctcgaaattgacttgccagttgtttcttaataaaacagtgt
gtgaaaaattgaaaatctcaagcaacagattattaatcaaatggagttta
caggaaaaacccattctactttctcctttagctaatcctgagacacaatg
acacacgtggattctacccgcttgtctggacatggtccattttgtttcag
aagagcaaatccagaagatccttctgtccgtgtctgcagagacatctctt
tgcttccgtccctgtctgcagagacatctctttgcaaagaggctcatttg
cagcatgctgtgctctgggcatgaagctgtcatctcctgctttctgaggc
tggagacgctgacagcttccaagcatagctttgggtttttgtttgttcta
tctatccaccgatctatctatccatctatctatctatctctgtgtgtggg
ggggggatcacatgctatggtgcatatggaggtcaaaggacaactctgtg
gcgttgcttctctccttgcccctttgtgtgggttctagggattgaactca
ggttgtcaggcttttcctgggcaagaatctatccattggagccatcttgc
tggcattaaaacattgctttttccttgaagtcttgagcttagccttttct
tttatatacttctaaaatagcacagtaataaaatggtttaaaagaaggag
caatcaaaacttggaggacatttgattgtgtaactccccttcttccttcc
ttaaccgactgttcgttctgttatagt
gaattcttgttcagtcatccaacttgaagtatgtctttcaatcaatcagt
ccaagctgactacaacagttcacatgtgaggtggggagggcagtgcgatc
aatctgtcccacggcaaaggatccaggtgtctcccaaagtgcagaatttc
ccagaatgctaagatgcacttcagaagacttgtcagcatggtgtgtgctg
agcaccaagaacatcctgagtgagctcccagagtcttgaaatcttcagcc
ctcagtttaagctttaacagtttaacttcctgttgaaaaaaacaaaaaaa
caacaaaaccaaccaaacccattcaactgccaatttctttgagtcttttt
gctgagtcatttgttacttatttgtgactaaagctgtaggctttgttttg
tttcattttgatttcctttctccctcagaaccctggattgtctggtacac
aggaaatggaagctaattcattttttaaaaagaatttttaatttcaatta
tgggagagggtgtgagttccggtgccaagtgtcagggcctcctagagcca
ccgtttacaggtggttatgtgacacccaacatggtttctgggaatagaac
tcaggtggtctgccttccctcctgcccccagagaataggagaaacagctc
acaaatattcatattgatactaacattagtgtctcacccaaacaaaggaa
gtggtccattttaagaaggaaggggactcatgtgtaatgagtaggggacc
gattatgacccctatggggtagggatggttagcagatctatgcgggtctc
ttatggctgcccaatttcatcctgcctatgggttttgatttgggggaatt
tttttgttgtattgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_113847558_113848681
seq2: B6Ng01-302N16.b_47_1173

seq1  GAATTCACTATGTAGTTCAGGCCTCAAACTTGCCACAATCCTTCCACCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTATGTAGTTCAGGCCTCAAACTTGCCACAATCCTTCCACCTC  50

seq1  AGCCTTCCAAGATGACAGGTGTGAGCCAGTGTGCCAAGCTCAGCGAGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTCCAAGATGACAGGTGTGAGCCAGTGTGCCAAGCTCAGCGAGCTT  100

seq1  CCTAAGACACATGCTCAGTAGTGCCAGCCTCTTCCTGAGGTACTATGGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGACACATGCTCAGTAGTGCCAGCCTCTTCCTGAGGTACTATGGTT  150

seq1  CTGAGGACTGAAAAGGGACCCAAATCTTTATAAAACTGAGGAATTTCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGACTGAAAAGGGACCCAAATCTTTATAAAACTGAGGAATTTCCCA  200

seq1  CACAATAACAAGTGTCAACCCCAGAATTACCTGACTGTGGAACGGGGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATAACAAGTGTCAACCCCAGAATTACCTGACTGTGGAACGGGGAGA  250

seq1  CTCAGGAGTGTAGGAAGTCTTTTGTATTCAGTGTAATTGAGGAAATTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGAGTGTAGGAAGTCTTTTGTATTCAGTGTAATTGAGGAAATTTGG  300

seq1  ATATTCATTGTTTTAGAGGAATTTCTTGCTGCAATTAGGAATTCCTGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCATTGTTTTAGAGGAATTTCTTGCTGCAATTAGGAATTCCTGGCT  350

seq1  CTTTCTGAGCTCGAAATTGACTTGCCAGTTGTTTCTTAATAAAACAGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGAGCTCGAAATTGACTTGCCAGTTGTTTCTTAATAAAACAGTGT  400

seq1  GTGAAAAATTGAAAATCTCAAGCAACAGATTATTAATCAAATGGAGTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAAATTGAAAATCTCAAGCAACAGATTATTAATCAAATGGAGTTTA  450

seq1  CAGGAAAAACCCATTCTACTTTCTCCTTTAGCTAATCCTGAGACACAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAAAACCCATTCTACTTTCTCCTTTAGCTAATCCTGAGACACAATG  500

seq1  ACACACGTGGATTCTACCCGCTTGTCTGGACATGGTCCATTTTGTTTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACGTGGATTCTACCCGCTTGTCTGGACATGGTCCATTTTGTTTCAG  550

seq1  AAGAGCAAATCCAGAAGATCCTTCTGTCCGTGTCTGCAGAGACATCTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCAAATCCAGAAGATCCTTCTGTCCGTGTCTGCAGAGACATCTCTT  600

seq1  TGCTTCCGTCCCTGTCTGCAGAGACATCTCTTTGCAAAGAGGCTCATTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCCGTCCCTGTCTGCAGAGACATCTCTTTGCAAAGAGGCTCATTTG  650

seq1  CAGCATGCTGTGCTCTGGGCATGAAGCTGTCATCTCCTGCTTTCTGAGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATGCTGTGCTCTGGGCATGAAGCTGTCATCTCCTGCTTTCTGAGGC  700

seq1  TGGAGACGCTGACAGCTTCCAAGCATAGCTTTGGGTTTTTGTTTGTTCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGACGCTGACAGCTTCCAAGCATAGCTTTGGGTTTTTGTTTGTTCTA  750

seq1  TCTATCCACCGATCTATCTATCCATCTATCTATCTATCTCTGTGTGT-GG  799
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TCTATCCACCGATCTATCTATCCATCTATCTATCTATCTCTGTGTGTGGG  800

seq1  GGGGGGATCACATGCTATGGTGCATATGGAGGTCAAAGGACAACTCTGTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGATCACATGCTATGGTGCATATGGAGGTCAAAGGACAACTCTGTG  850

seq1  GCGTTGCTTCTCTCCTTGCCCCTTTGTGTGGGTTCTAGGGATTGAACTCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTTGCTTCTCTCCTTGCCCCTTTGTGTGGGTTCTAGGGATTGAACTCA  900

seq1  GGTTGTCAGGC-TTTCCT-GGCAAGAATCTATCCA-TGGAGCCATCTTGC  946
      ||||||||||| |||||| |||||||||||||||| ||||||||||||||
seq2  GGTTGTCAGGCTTTTCCTGGGCAAGAATCTATCCATTGGAGCCATCTTGC  950

seq1  TGGCATT-AAACATTGCTTTTCCTTTGAAGTTCTGAGGCTTAGCCTTTTC  995
      ||||||| ||||||||||||| | |||||||  ||| |||||||||||||
seq2  TGGCATTAAAACATTGCTTTTTCCTTGAAGTCTTGA-GCTTAGCCTTTTC  999

seq1  -TTTATATACTTCTAAAAATAGCACAGTAATAAAATGTTTTAAAAGAAAG  1044
       ||||||||||||| |||||||||||||||||||||| |||||||||| |
seq2  TTTTATATACTTCT-AAAATAGCACAGTAATAAAATGGTTTAAAAGAAGG  1048

seq1  AGCCAAATCAAAAACTTTGAGGGACATTTG-TTGTGT-ACCCCCCTCTCT  1092
      |||  |||| ||||||| || ||||||||| |||||| || |||||   |
seq2  AGC--AATC-AAAACTTGGA-GGACATTTGATTGTGTAACTCCCCTTCTT  1094

seq1  CCTTCCTTAAACGACTG-TCTGTCTGTTATAGT  1124
      |||||||||| |||||| ||  |||||||||||
seq2  CCTTCCTTAACCGACTGTTCGTTCTGTTATAGT  1127

seq1: chr13_113960117_113960981
seq2: B6Ng01-302N16.g_65_930 (reverse)

seq1  CACAATACAAC-AAAAAATTCCCCCAAATCAAAACCCATAGGCAGGATGA  49
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CACAATACAACAAAAAAATTCCCCCAAATCAAAACCCATAGGCAGGATGA  50

seq1  AATTGGGCAGCCATAAGAGACCCGCATAGATCTGCTAACCATCCCTACCC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGGCAGCCATAAGAGACCCGCATAGATCTGCTAACCATCCCTACCC  100

seq1  CATAGGGGTCATAATCGGTCCCCTACTCATTACACATGAGTCCCCTTCCT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGGGTCATAATCGGTCCCCTACTCATTACACATGAGTCCCCTTCCT  150

seq1  TCTTAAAATGGACCACTTCCTTTGTTTGGGTGAGACACTAATGTTAGTAT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAAATGGACCACTTCCTTTGTTTGGGTGAGACACTAATGTTAGTAT  200

seq1  CAATATGAATATTTGTGAGCTGTTTCTCCTATTCTCTGGGGGCAGGAGGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATGAATATTTGTGAGCTGTTTCTCCTATTCTCTGGGGGCAGGAGGG  250

seq1  AAGGCAGACCACCTGAGTTCTATTCCCAGAAACCATGTTGGGTGTCACAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAGACCACCTGAGTTCTATTCCCAGAAACCATGTTGGGTGTCACAT  300

seq1  AACCACCTGTAAACGGTGGCTCTAGGAGGCCCTGACACTTGGCACCGGAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACCTGTAAACGGTGGCTCTAGGAGGCCCTGACACTTGGCACCGGAA  350

seq1  CTCACACCCTCTCCCATAATTGAAATTAAAAATTCTTTTTAAAAAATGAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACACCCTCTCCCATAATTGAAATTAAAAATTCTTTTTAAAAAATGAA  400

seq1  TTAGCTTCCATTTCCTGTGTACCAGACAATCCAGGGTTCTGAGGGAGAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTTCCATTTCCTGTGTACCAGACAATCCAGGGTTCTGAGGGAGAAA  450

seq1  GGAAATCAAAATGAAACAAAACAAAGCCTACAGCTTTAGTCACAAATAAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATCAAAATGAAACAAAACAAAGCCTACAGCTTTAGTCACAAATAAG  500

seq1  TAACAAATGACTCAGCAAAAAGACTCAAAGAAATTGGCAGTTGAATGGGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAATGACTCAGCAAAAAGACTCAAAGAAATTGGCAGTTGAATGGGT  550

seq1  TTGGTTGGTTTTGTTGTTTTTTTGTTTTTTTCAACAGGAAGTTAAACTGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTGGTTTTGTTGTTTTTTTGTTTTTTTCAACAGGAAGTTAAACTGT  600

seq1  TAAAGCTTAAACTGAGGGCTGAAGATTTCAAGACTCTGGGAGCTCACTCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCTTAAACTGAGGGCTGAAGATTTCAAGACTCTGGGAGCTCACTCA  650

seq1  GGATGTTCTTGGTGCTCAGCACACACCATGCTGACAAGTCTTCTGAAGTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTTCTTGGTGCTCAGCACACACCATGCTGACAAGTCTTCTGAAGTG  700

seq1  CATCTTAGCATTCTGGGAAATTCTGCACTTTGGGAGACACCTGGATCCTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTAGCATTCTGGGAAATTCTGCACTTTGGGAGACACCTGGATCCTT  750

seq1  TGCCGTGGGACAGATTGATCGCACTGCCCTCCCCACCTCACATGTGAACT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCGTGGGACAGATTGATCGCACTGCCCTCCCCACCTCACATGTGAACT  800

seq1  GTTGTAGTCAGCTTGGACTGATTGATTGAAAGACATACTTCAAGTTGGAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTAGTCAGCTTGGACTGATTGATTGAAAGACATACTTCAAGTTGGAT  850

seq1  GACTGAACAAGAATTC  865
      ||||||||||||||||
seq2  GACTGAACAAGAATTC  866