BAC Information

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BAC

Clone NameB6Ng01-303A01
Chromosome13 (Build37)
Map Location 54,734,112 - 54,908,320
singlet/doubletdoublet
Overlap geneUbxd8, Rn4.5s-ps3, Rnf44, BC040758, Gprin1, Sncb, Eif4e1b, Tspan17
Upstream geneE130119H09Rik, Drd1a, Sfxn1, Hrh2, LOC100040535, Cplx2, Thoc3, LOC100040543, 4732471D19Rik, 4833439L19Rik, Arl10, D13Wsu177e, Higd2a, Cltb
Downstream geneUnc5a, Hk3, Uimc1, LOC622707, Zfp346, Fgfr4, Nsd1, Rab24, Prelid1, Mxd3, Lman2, Rgs14, Slc34a1, Pfn3, F12, Gprk6, Prr7, Dbn1, Pdlim7, Dok3, Ddx41, BC021381, Tmed9, B4galt7, Caml, Ddx46, B230219D22Rik, 2310047H23Rik, Pcbd2, Catsper3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-303A01.bB6Ng01-303A01.g
ACCGA096910GA096911
length1,059842
definitionB6Ng01-303A01.b B6Ng01-303A01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,907,259 - 54,908,320)(54,734,112 - 54,734,950)
sequence
gaattccaccattactctgtccaaccaaagcttgtcctgctgcaggacca
gggtggcagcagggtgggcagaggcagccctggacacgttcagaccagct
cagcatctccatctcctgcctgcctccccaccctgtgtgggcctcagagt
gatcatccctcaaggcgcctcccgccccattcatccccattagccgatgt
ccacactgggccagagggagatcaattaccaggctggccactgaaccgtg
ttaatgaggatgtacgctcctggctggcggagaaggtgggaggagcgagg
aaggtcaagggaggcagagaggagccccaggcgtcctcactggaggcttc
agggtgggacccctctacaagacgccctctttgaggtgcagggaatgccc
tttctgcctggcactgggttataacgccagctgtgaggcaggggagagga
aactgcctggctggggctggatgacagggactcaagcaaacgctggaaag
aggacatcccatcccctgtgcctttgttcaggctcatctttctgccagca
gtcatcccctgcatctattctctgatacagcaaggaacctccaaggcact
cctaaagcctctgccagacagaaacaccactgccttgttgggctctcctg
ccctgggggttcccactgcaccaccgcaccacccgtggctgtgacacatt
ccacagatctgtgtgaaaaagatgctcagccaggcttacaggaaagctat
gaggaagacggcttccccatcgctctggcaaagactttgcacagataaag
gccttagcaacaaggcaaggtgtcaccttgcattatccgtgggactgaaa
atggtcatggcttcctcaaagggtaaggcagtcatgttaagtaaataaaa
accacccatgtcctttaacgcagcagttcactttcaagcattcattcatt
ctatagccatgggagcgtccaaagatgatggctgcctgtacttgccctaa
gatgctacctgaaggagaggtaggcaccttgtccgtgtggacaccttctt
cacagcaga
gaattccaggacagccagggctacacagagaaaccctatcttgaaaaacc
tttaagaaagtgtcagaatttaactgtaaacaacacaagttttctctaag
agctttggttttaggtcaaagcctggttacaggtcgtcaccttgtgaatg
aactttaaattccattttctcccgagtaagcacagctctcttgtttggga
aggagagaacaaaggttatctgacttttgccagcttttactctgggaaaa
aagaagcctcagcaagctaattggagcacaaagcacttagctatctactt
tgtgtgttagtataagaacttgagatatgggaagagagacacttaggaaa
gccaggtgagtataccctgcttttccagtctctagccaagtaatttgtta
cagcacctggttaagttgtcacactcccagcctgttgtgtttcctctctg
aattatactctcctacgagctaggtcaggaattataacattcagggtttg
tttgcttggttttttttttttttgttttttttttttttttttttttttgc
cggtgattggcacccccttcacttaacaagatggagttaggacagggttg
gatagagaaaagcagttctcacatgctctcagtatcctacaaagtacttg
tgattgattgaaatccaggcagactctaggcccccaacaataaataccat
tcatctctttctaaccagttctactgttgtaaatttactgtatctgaatg
cagctcctaaatcactgggaaggaattattatgtcttgagacagtatggg
gggtgagacactcagatgggcttggctggttttgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_54907259_54908320
seq2: B6Ng01-303A01.b_43_1101 (reverse)

seq1  TCTGCCTGTGAAGAAGGTGTCCACACGGACAGGTTGCCTACCTCTTCCTT  50
      |||| |||||||||||||||||||||||||| | |||||||||| |||||
seq2  TCTG-CTGTGAAGAAGGTGTCCACACGGACAAGGTGCCTACCTC-TCCTT  48

seq1  CAGGTAGCATCCTTAGGGCAAGTACAGGCAGCCATCATCCTTGGACGCTC  100
      |||||||||| |||||||||||||||||||||||||||| ||||||||||
seq2  CAGGTAGCAT-CTTAGGGCAAGTACAGGCAGCCATCATCTTTGGACGCTC  97

seq1  CCATGCCTATAGAATGAATGAATGCTTGAAAGTGAACTGCTGCGTTAAAG  150
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGCTATAGAATGAATGAATGCTTGAAAGTGAACTGCTGCGTTAAAG  147

seq1  GACATGGGTGGTTTTTATTTACTTAACATGACTGCCTTACCCTTTGAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGGGTGGTTTTTATTTACTTAACATGACTGCCTTACCCTTTGAGGA  197

seq1  AGCCATGACCATTTTCAGTCCCACGGATAATGCAAGGTGACACCTTGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATGACCATTTTCAGTCCCACGGATAATGCAAGGTGACACCTTGCCT  247

seq1  TGTTGCTAAGGCCTTTATCTGTGCAAAGTCTTTGCCAGAGCGATGGGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCTAAGGCCTTTATCTGTGCAAAGTCTTTGCCAGAGCGATGGGGAA  297

seq1  GCCGTCTTCCTCATAGCTTTCCTGTAAGCCTGGCTGAGCATCTTTTTCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGTCTTCCTCATAGCTTTCCTGTAAGCCTGGCTGAGCATCTTTTTCAC  347

seq1  ACAGATCTGTGGAATGTGTCACAGCCACGGGTGGTGCGGTGGTGCAGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATCTGTGGAATGTGTCACAGCCACGGGTGGTGCGGTGGTGCAGTGG  397

seq1  GAACCCCCAGGGCAGGAGAGCCCAACAAGGCAGTGGTGTTTCTGTCTGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCCCAGGGCAGGAGAGCCCAACAAGGCAGTGGTGTTTCTGTCTGGC  447

seq1  AGAGGCTTTAGGAGTGCCTTGGAGGTTCCTTGCTGTATCAGAGAATAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCTTTAGGAGTGCCTTGGAGGTTCCTTGCTGTATCAGAGAATAGAT  497

seq1  GCAGGGGATGACTGCTGGCAGAAAGATGAGCCTGAACAAAGGCACAGGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGGATGACTGCTGGCAGAAAGATGAGCCTGAACAAAGGCACAGGGG  547

seq1  ATGGGATGTCCTCTTTCCAGCGTTTGCTTGAGTCCCTGTCATCCAGCCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGATGTCCTCTTTCCAGCGTTTGCTTGAGTCCCTGTCATCCAGCCCC  597

seq1  AGCCAGGCAGTTTCCTCTCCCCTGCCTCACAGCTGGCGTTATAACCCAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGGCAGTTTCCTCTCCCCTGCCTCACAGCTGGCGTTATAACCCAGT  647

seq1  GCCAGGCAGAAAGGGCATTCCCTGCACCTCAAAGAGGGCGTCTTGTAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGCAGAAAGGGCATTCCCTGCACCTCAAAGAGGGCGTCTTGTAGAG  697

seq1  GGGTCCCACCCTGAAGCCTCCAGTGAGGACGCCTGGGGCTCCTCTCTGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCCCACCCTGAAGCCTCCAGTGAGGACGCCTGGGGCTCCTCTCTGCC  747

seq1  TCCCTTGACCTTCCTCGCTCCTCCCACCTTCTCCGCCAGCCAGGAGCGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTGACCTTCCTCGCTCCTCCCACCTTCTCCGCCAGCCAGGAGCGTA  797

seq1  CATCCTCATTAACACGGTTCAGTGGCCAGCCTGGTAATTGATCTCCCTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTCATTAACACGGTTCAGTGGCCAGCCTGGTAATTGATCTCCCTCT  847

seq1  GGCCCAGTGTGGACATCGGCTAATGGGGATGAATGGGGCGGGAGGCGCCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCAGTGTGGACATCGGCTAATGGGGATGAATGGGGCGGGAGGCGCCT  897

seq1  TGAGGGATGATCACTCTGAGGCCCACACAGGGTGGGGAGGCAGGCAGGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGATGATCACTCTGAGGCCCACACAGGGTGGGGAGGCAGGCAGGAG  947

seq1  ATGGAGATGCTGAGCTGGTCTGAACGTGTCCAGGGCTGCCTCTGCCCACC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGATGCTGAGCTGGTCTGAACGTGTCCAGGGCTGCCTCTGCCCACC  997

seq1  CTGCTGCCACCCTGGTCCTGCAGCAGGACAAGCTTTGGTTGGACAGAGTA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGCCACCCTGGTCCTGCAGCAGGACAAGCTTTGGTTGGACAGAGTA  1047

seq1  ATGGTGGAATTC  1062
      ||||||||||||
seq2  ATGGTGGAATTC  1059

seq1: chr13_54734112_54734950
seq2: B6Ng01-303A01.g_66_907

seq1  GAATTCCAGGACAGCCAGGGCTACACAGAGAAACCCTATCTTGAAAAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCCAGGGCTACACAGAGAAACCCTATCTTGAAAAACC  50

seq1  TTTAAGAAAGTGTCAGAATTTAACTGTAAACAACACAAGTTTTCTCTAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGAAAGTGTCAGAATTTAACTGTAAACAACACAAGTTTTCTCTAAG  100

seq1  AGCTTTGGTTTTAGGTCAAAGCCTGGTTACAGGTCGTCACCTTGTGAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTGGTTTTAGGTCAAAGCCTGGTTACAGGTCGTCACCTTGTGAATG  150

seq1  AACTTTAAATTCCATTTTCTCCCGAGTAAGCACAGCTCTCTTGTTTGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTAAATTCCATTTTCTCCCGAGTAAGCACAGCTCTCTTGTTTGGGA  200

seq1  AGGAGAGAACAAAGGTTATCTGACTTTTGCCAGCTTTTACTCTGGGAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGAACAAAGGTTATCTGACTTTTGCCAGCTTTTACTCTGGGAAAA  250

seq1  AAGAAGCCTCAGCAAGCTAATTGGAGCACAAAGCACTTAGCTATCTACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGCCTCAGCAAGCTAATTGGAGCACAAAGCACTTAGCTATCTACTT  300

seq1  TGTGTGTTAGTATAAGAACTTGAGATATGGGAAGAGAGACACTTAGGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTTAGTATAAGAACTTGAGATATGGGAAGAGAGACACTTAGGAAA  350

seq1  GCCAGGTGAGTATACCCTGCTTTTCCAGTCTCTAGCCAAGTAATTTGTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGTGAGTATACCCTGCTTTTCCAGTCTCTAGCCAAGTAATTTGTTA  400

seq1  CAGCACCTGGTTAAGTTGTCACACTCCCAGCCTGTTGTGTTTCCTCTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACCTGGTTAAGTTGTCACACTCCCAGCCTGTTGTGTTTCCTCTCTG  450

seq1  AATTATACTCTCCTACGAGCTAGGTCAGGAATTATAACATTCAGGGTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATACTCTCCTACGAGCTAGGTCAGGAATTATAACATTCAGGGTTTG  500

seq1  TTTGCTTGGTTTTTTTTTTTTTTGTTTTTTTTTTTTTTTTTTTTTTTTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTGGTTTTTTTTTTTTTTGTTTTTTTTTTTTTTTTTTTTTTTTGC  550

seq1  CGGTGATTGGCACCCCCTTCACTTAACAAGATGGAGTTAGGACAGGGTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGATTGGCACCCCCTTCACTTAACAAGATGGAGTTAGGACAGGGTTG  600

seq1  GATAGAGAAAAGCAGTTCTCACATGCTCTCAGTATCCTACAAAGTACTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAGAAAAGCAGTTCTCACATGCTCTCAGTATCCTACAAAGTACTTG  650

seq1  TGATTGATTGAAATCCAGGCAGACTCTAGGCCCCCAACAATAAATACCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGATTGAAATCCAGGCAGACTCTAGGCCCCCAACAATAAATACCAT  700

seq1  TCATCTCTTTCTAACCAGTTCTACTGTTGTAAA-TTACTGTATCTGAATG  749
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TCATCTCTTTCTAACCAGTTCTACTGTTGTAAATTTACTGTATCTGAATG  750

seq1  CAGCTCCTAAATCACTGGGAAGGAATTATTATGTC-TGAGACAGTAT-GG  797
      ||||||||||||||||||||||||||||||||||| ||||||||||| ||
seq2  CAGCTCCTAAATCACTGGGAAGGAATTATTATGTCTTGAGACAGTATGGG  800

seq1  GGGTGAGACACTCAGATGGGCTTGGCTGGTTTTGTGTGTGTG  839
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGAGACACTCAGATGGGCTTGGCTGGTTTTGTGTGTGTG  842