BAC Information

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BAC

Clone NameB6Ng01-303D10
Chromosome13 (Build37)4 (Build37)
Map Location 79,931,203 - 79,932,356148,043,363 - 148,043,923
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG666883
Downstream geneLOC666925, LOC382780, EG666933
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-303D10.bB6Ng01-303D10.g
ACCGA097069GA097070
length1,174978
definitionB6Ng01-303D10.b B6Ng01-303D10.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(79,931,203 - 79,932,356)(148,043,363 - 148,043,923)
sequence
gaattcatcatgaccagcacagttacaatgaatactaaatgagctaataa
taacgaaccatttaaattgttgcctaattgttttatttcattttatgtaa
ttttttggtcctattttaactgctaggttaatagacaatgacattaaata
attcattttcttgctcacactgttttcaagatctctgtattccccctctt
tgtttcatatcacatccatctgttgtctctttctctaatactactcctga
cagtcaattagcaaatacagaccataattgacaatgaaaaagcaatgaaa
tgagaagacacattgagtacatttcccctggaaccaacatactggacata
gtcaaattcaaacttttaagttatcactattgatgttataaaatactaag
aatttttttgttttttaattctacatcctgtagattcaattaaatgaaac
tgttgtttgtttaaaaattattggtatttcataaaagcttaatttattca
attattaaaataatttaattttaataactacttttgtgtgtctttgtatt
gtgctatgtctaatatatatacatacatgtgtgtgtgtatatatatatat
atgtataagtatacatatatatacacatacatatatatgtgtatatatat
atacacatacatatatatatatatatatacatatatatatatatatatat
atataaacattggcacttaaatatgtatatgcacacatgtggaatcctaa
aattgatatcttgtctttcctcaattactttctatgcttaatttttttag
aaaaactctctctttgaatgtggatctcatagactaacctaagcaagatg
tagaatgatatttaggaacctgtctgtctccattctcccactgtgtttac
aagaattcatcacccggtaataattttttatgtgggttatgcggatccaa
agagtttcctgtttgtatgggcatgaagtactttactcatgaaactataa
tcgtctctaatttttcacttttcaaactctttagaaagccaataggtata
gcatactaggaataacctgttataaaaaaggattggaacaatgaattatg
ctccacgcttcagaatttggtagaccttacaaagatatatgttagaaatt
cgaagctcatattccaaggtaatc

gaattcaggggatggttttcagggaggaaataggaaaggggaaatgattt
aatgataatctaaattcaaaaacataagagaggtatttgtagagaggtat
tcttcatgggtagacaatgctgatactcatcaccagaaggcactgactta
atggaaagctctgtgccaggagcagaataccatcttacatgctgttggcc
aggacaggaagccctagctgtccccccagcaatagaggctatggcctttg
ttctctggaattaagaaacactcaagagtcagatctgattgctgaggaca
acatatttcaaattcaagacacaagaaatcaagctggaactaagttagaa
gggtttttttctttctttctttctttttctttctttcttttttttttttt
ttttgaatcattgatttttttttaattaggtattttcctcatttacattt
ccaatgctatcccaaaagtccccataccctccccaccactcccctaccca
cccactcccacttcttcgccctggccaactcctcacccaaggtgaccagg
tcctggcacagaccagaagggacttgtgaccctggtcaggtcgggttttc
tgcttccctaatgctgtctcaggtcccatgattgtattggaacaaatgtg
ttccactcactggtggtcctaagatcgcgtggagagtcctctaaggacct
tgggggtgcccgctgactctgtgcccaaggtgacccagtgctgtcaccaa
ccggaagggaccctggttttttgtttgttttgctttgggctttttttttt
tgtttgtttgtttgtttgtttgtttgttttgtgttttgtttttggagaca
gggttctctgtgtagccctggctgtcctggaactcactttgtagaccaag
gctgggcctcgaactcagaaatctgccctgcctcttgcctcccgagtgct
gggattaaggcgtgcgccaccacgcccg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_79931203_79932356
seq2: B6Ng01-303D10.b_47_1220 (reverse)

seq1  GATTACCTTG--ATATGAGCTCTAATTTTCTACCATATA--CTTGT-AGG  45
      ||||||||||  |||||||||   | |||||| ||||||   |||| |||
seq2  GATTACCTTGGAATATGAGCTTCGAATTTCTAACATATATCTTTGTAAGG  50

seq1  TCTA-CAAATTCTGAAGCCGTGAGCATAATTCA-TGTTCCATCCCTTTTA  93
      |||| |||||||||||||   |||||||||||| |||||||  |||||| 
seq2  TCTACCAAATTCTGAAGCGTGGAGCATAATTCATTGTTCCAATCCTTTTT  100

seq1  T---ACAGGT--ATCCTAGTATGCCTATA-CTATT-GCTTTCTAAAGAGT  136
      |   ||||||   |||||||||| ||||| ||||| ||||||||||||||
seq2  TATAACAGGTTATTCCTAGTATG-CTATACCTATTGGCTTTCTAAAGAGT  149

seq1  TTG-AAAGTGAAAAATTAGAGACGATTATAG-TTCATGAGTAAAGTAC-T  183
      ||| ||||||||||||||||||||||||||| |||||||||||||||| |
seq2  TTGAAAAGTGAAAAATTAGAGACGATTATAGTTTCATGAGTAAAGTACTT  199

seq1  CATG-CCATACAAACAGG-AACTCTTTGGATCCGCATAACCCACATAAAA  231
      |||| ||||||||||||| |||||||||||||||||||||||||||||||
seq2  CATGCCCATACAAACAGGAAACTCTTTGGATCCGCATAACCCACATAAAA  249

seq1  A--TATTACCGGGTGATGAATTCTTGTAAACACAGTGGGAGAATGGAGAC  279
      |  |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTACCGGGTGATGAATTCTTGTAAACACAGTGGGAGAATGGAGAC  299

seq1  AGACAGGTTCCTAAATATCATTCTACATCTTGCTTAGGTTAGTCTATGAG  329
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGTTCCTAAATATCATTCTACATCTTGCTTAGGTTAGTCTATGAG  349

seq1  ATCCACATTCAAAGAGAGAGTTTTTCTTAAAAAATTAAGCATAGAAAGTA  379
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ATCCACATTCAAAGAGAGAGTTTTTCTAAAAAAATTAAGCATAGAAAGTA  399

seq1  ATTGAGGAAAGACAAGATATCAATTTTAGGATTCCACATGTGTGCATATA  429
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGGAAAGACAAGATATCAATTTTAGGATTCCACATGTGTGCATATA  449

seq1  CATATTTAAGTGCCAATGTTTATATATATATATATATATATATATGTATA  479
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTAAGTGCCAATGTTTATATATATATATATATATATATATGTATA  499

seq1  TATATATATATATATGTATGTGTATATATATATACACATATATATGTATG  529
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATATGTATGTGTATATATATATACACATATATATGTATG  549

seq1  TGTATATATATGTATACTTATACATATATATATATATACACACACACATG  579
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATATATGTATACTTATACATATATATATATATACACACACACATG  599

seq1  TATGTATATATATTAGACATAGCACAATACAAAGACACACAAAAGTAGTT  629
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATATATATTAGACATAGCACAATACAAAGACACACAAAAGTAGTT  649

seq1  ATTAAAATTAAATTATTTTAATAATTGAATAAATTAAGCTTTTATGAAAT  679
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAATTAAATTATTTTAATAATTGAATAAATTAAGCTTTTATGAAAT  699

seq1  ACCAATAATTTTTAAACAAACAACAGTTTCATTTAATTGAATCTACAGGA  729
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATAATTTTTAAACAAACAACAGTTTCATTTAATTGAATCTACAGGA  749

seq1  TGTAGAATTAAAAAACAAAAAAATTCTTAGTATTTTATAACATCAATAGT  779
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAATTAAAAAACAAAAAAATTCTTAGTATTTTATAACATCAATAGT  799

seq1  GATAACTTAAAAGTTTGAATTTGACTATGTCCAGTATGTTGGTTCCAGGG  829
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACTTAAAAGTTTGAATTTGACTATGTCCAGTATGTTGGTTCCAGGG  849

seq1  GAAATGTACTCAATGTGTCTTCTCATTTCATTGCTTTTTCATTGTCAATT  879
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTACTCAATGTGTCTTCTCATTTCATTGCTTTTTCATTGTCAATT  899

seq1  ATGGTCTGTATTTGCTAATTGACTGTCAGGAGTAGTATTAGAGAAAGAGA  929
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCTGTATTTGCTAATTGACTGTCAGGAGTAGTATTAGAGAAAGAGA  949

seq1  CAACAGATGGATGTGATATGAAACAAAGAGGGGGAATACAGAGATCTTGA  979
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGATGGATGTGATATGAAACAAAGAGGGGGAATACAGAGATCTTGA  999

seq1  AAACAGTGTGAGCAAGAAAATGAATTATTTAATGTCATTGTCTATTAACC  1029
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGTGTGAGCAAGAAAATGAATTATTTAATGTCATTGTCTATTAACC  1049

seq1  TAGCAGTTAAAATAGGACCAAAAAATTACATAAAATGAAATAAAACAATT  1079
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGTTAAAATAGGACCAAAAAATTACATAAAATGAAATAAAACAATT  1099

seq1  AGGCAACAATTTAAATGGTTCGTTATTATTAGCTCATTTAGTATTCATTG  1129
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAACAATTTAAATGGTTCGTTATTATTAGCTCATTTAGTATTCATTG  1149

seq1  TAACTGTGCTGGTCATGATGAATTC  1154
      |||||||||||||||||||||||||
seq2  TAACTGTGCTGGTCATGATGAATTC  1174


seq1: chr4_148043363_148043923
seq2: B6Ng01-303D10.g_874_1044

seq1  TTGTTTGTTTGTTTGTTTGTTTTGTTTTGTTTTTCAGAGGTGGAGTTTCT  50
                                                        
seq2  --------------------------------------------------  0

seq1  CTGTGTAGCCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCAAACTCAG  100
                                                        
seq2  --------------------------------------------------  0

seq1  AAATCTGCCTGCCTGTGCCTCCCAAGTGCTGGGATTAAAAGTGTGCGTCA  150
                                                        
seq2  --------------------------------------------------  0

seq1  CCACTGCCCTGCTTGTTATGTTTTTGAGACAGGTTTCTCTGTGTATCCCT  200
                                                        
seq2  --------------------------------------------------  0

seq1  GGCCATCTGGAACTCATTCTCTAGACCAGGCTGGCCTAGAAACTCAGAGA  250
                                                        
seq2  --------------------------------------------------  0

seq1  TTTGCCTGCCTCTGCCTCCAGAGTGATGGGATAAAAGGCGTGCGCCACCA  300
                                                        
seq2  --------------------------------------------------  0

seq1  CCACCCAGCTTTTGTTTGTTTGTTTGTTTTGCTTGCATACACGTCTACAT  350
                                                        
seq2  --------------------------------------------------  0

seq1  ACCATATGTGTACTAGTGTGCATGAAACCTGAAGAGGATTTCTTTTTTTT  400
                                             || ||| ||| 
seq2  ---------------------------------------TTGTTTGTTTG  11

seq1  TTTTTTTTTTAACTTTTTTTTGTTTTTTTGAGACAGGGTTTCTCTGTATA  450
      ||| ||| ||   || | |||  ||||| ||||||||| |||||||| ||
seq2  TTTGTTTGTT---TTGTGTTTTGTTTTTGGAGACAGGG-TTCTCTGTGTA  57

seq1  GCCCTGGCTGTCCTGGAACTCACTTTGTAGACC-AGGCT-GGCCTCGAAC  498
      ||||||||||||||||||||||||||||||||| ||||| ||||||||||
seq2  GCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAAGGCTGGGCCTCGAAC  107

seq1  TCAGAAATCCG-CCTGCCTC-TGTCTCCCAAGTGCTGGGATTAAAGGCGT  546
      ||||||||| | |||||||| || ||||| |||||||||||| |||||||
seq2  TCAGAAATCTGCCCTGCCTCTTGCCTCCCGAGTGCTGGGATT-AAGGCGT  156

seq1  GCGCCACCACGCCCG  561
      |||||||||||||||
seq2  GCGCCACCACGCCCG  171


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