BAC Information

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BAC

Clone NameB6Ng01-303F04
Chromosome13 (Build37)
Map Location 49,257,839 - 49,405,380
singlet/doubletdoublet
Overlap geneNinj1, 1110007C09Rik, Susd3, Fgd3
Upstream geneId4, LOC667351, Zfp169, A830005F24Rik, AW456874, Barx1, Phf2, EG667415, BC010304, C030044B11Rik, Wnk2
Downstream geneBicd2, Ippk, Cenpp, Tes3-ps, Ecm2, Aspn, Omd, Ogn, Nol8, Iars, LOC667488, LOC670357, EG638833, Gm272, EG667503, EG667507, LOC100040099, LOC625110, LOC676907, LOC667546, LOC667552, LOC100040085, LOC100040159, LOC100040176, LOC100040118, Gm906, 2310081J21Rik, LOC676954
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-303F04.bB6Ng01-303F04.g
ACCGA097151GA097152
length6301,123
definitionB6Ng01-303F04.b B6Ng01-303F04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,257,839 - 49,258,468)(49,404,269 - 49,405,380)
sequence
gaattctcagaagcagggttattgagttgaaagcttgatgcatctgtaat
tttgatagacttcccatgattgccctttgggagaggttatatcaattggc
gcttgggccagcaaggcagggagtatccgtccccacagttctgcccacag
aatgcgataattgaatttgagattaggagaaaagtggcaatttccatgcc
aggtaatttccgggtcatgggctgttcctccatcccttccctgccaactg
ctctcacagactgacctgtctctgccctgccctgagctctggactctagc
aaaaatcctgaccatgtcaggagaaggcaactagatagaacacagaaacg
cacactggacacggtaccttcttccctcaggacacgtgacagctcctcat
gtgctgagagaggcaacctgtggtcactcctcactgagggaagtggggaa
aggaagacactgaggagcgtgtggttagtcctggcccttcatctaaccac
actggatgggcccctttcccacccctgttattgcagatgactagacaggg
aagctagatactgaaggtattgctggaatctctctctctctctctctctc
tctctctctctctctctctctctctctctc
gaattcaagattagttgatgcaatggtgcacagtagcgatcccagcattt
gaaagactgaaacagtgtaaattcaaatgagtttggacaacacagagaat
ccaaggccatcctggactacttggtgagactgtctcaacaaaacctaaaa
caaacacaaaatttaggatagattaagaagacattactgaaatggagtca
aatttgcagcctatatgcatgttaggctaaccccctgccccattatttat
tgacttcctgagataatgaggggactttcccctgagggctgcctggaaga
ggcagagcttagccctgctggggcagtcctcatcagccagataaccagaa
gttccctcaggtctcttggagtcaccgtgaaacaatgtcactggtggggt
atgtttcttccaactttctgtagtcaccaaggtctgtctggcctgggtca
cctgtcccctgatggatcctcttccccatagacaacatcaatctcaggtc
tgctcagaggagcccaccaaaccagatgcaggaggtgtctttactcagtg
acttgttaaacctaagctcagccctggctgctactgcagaacctggtagg
gctgagccaggtcgagtaaaaggattacgctttcgaagtcatcccaccac
aagcagaccaggcccttcaggaccagcagaccaacctcctctcacgttgc
gtcatcgctacggaaatgcaaatgtgccactgttttgtgaccaatattgc
aaaaattagaaagaggaagttgggttttgttcttgcatgagttcagccct
gggggagatgcagactggtcttggaagaaagggtgagtggagattggctc
ctgggatcttttgcagaatcctacagtgtttgtcttgcgctgtgaagggg
cttcgtgggcgggtggtaggaggttactagaaaccaaacaggaacccatt
caagggagacagattgtttttcaaagcagaagttgctgttgcacggtagc
ggtgtctcttttcatgctgttgttcttttcagtggctcgtactggtgaga
agataggcttgctattggctgggcatgaaagagttcgcgaactacagagt
tcttgacgtgcctatattggcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_49257839_49258468
seq2: B6Ng01-303F04.b_48_677

seq1  GAATTCTCAGAAGCAGGGTTATTGAGTTGAAAGCTTGATGCATCTGTAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGAAGCAGGGTTATTGAGTTGAAAGCTTGATGCATCTGTAAT  50

seq1  TTTGATAGACTTCCCATGATTGCCCTTTGGGAGAGGTTATATCAATTGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATAGACTTCCCATGATTGCCCTTTGGGAGAGGTTATATCAATTGGC  100

seq1  GCTTGGGCCAGCAAGGCAGGGAGTATCCGTCCCCACAGTTCTGCCCACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGGCCAGCAAGGCAGGGAGTATCCGTCCCCACAGTTCTGCCCACAG  150

seq1  AATGCGATAATTGAATTTGAGATTAGGAGAAAAGTGGCAATTTCCATGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCGATAATTGAATTTGAGATTAGGAGAAAAGTGGCAATTTCCATGCC  200

seq1  AGGTAATTTCCGGGTCATGGGCTGTTCCTCCATCCCTTCCCTGCCAACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAATTTCCGGGTCATGGGCTGTTCCTCCATCCCTTCCCTGCCAACTG  250

seq1  CTCTCACAGACTGACCTGTCTCTGCCCTGCCCTGAGCTCTGGACTCTAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCACAGACTGACCTGTCTCTGCCCTGCCCTGAGCTCTGGACTCTAGC  300

seq1  AAAAATCCTGACCATGTCAGGAGAAGGCAACTAGATAGAACACAGAAACG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCCTGACCATGTCAGGAGAAGGCAACTAGATAGAACACAGAAACG  350

seq1  CACACTGGACACGGTACCTTCTTCCCTCAGGACACGTGACAGCTCCTCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTGGACACGGTACCTTCTTCCCTCAGGACACGTGACAGCTCCTCAT  400

seq1  GTGCTGAGAGAGGCAACCTGTGGTCACTCCTCACTGAGGGAAGTGGGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGAGAGAGGCAACCTGTGGTCACTCCTCACTGAGGGAAGTGGGGAA  450

seq1  AGGAAGACACTGAGGAGCGTGTGGTTAGTCCTGGCCCTTCATCTAACCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGACACTGAGGAGCGTGTGGTTAGTCCTGGCCCTTCATCTAACCAC  500

seq1  ACTGGATGGGCCCCTTTCCCACCCCTGTTATTGCAGATGACTAGACAGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGATGGGCCCCTTTCCCACCCCTGTTATTGCAGATGACTAGACAGGG  550

seq1  AAGCTAGATACTGAAGGTATTGCTGGAATCTCTCTCTCTCTCTCTCTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAGATACTGAAGGTATTGCTGGAATCTCTCTCTCTCTCTCTCTCTC  600

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  630
      ||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  630

seq1: chr13_49404269_49405380
seq2: B6Ng01-303F04.g_67_1189 (reverse)

seq1  CTGCCAATA---GCACGTCCAGGACTCTGTAG-TCGCGAACTCTTCTCAT  46
      |||||||||   ||||||| || ||||||||| |||||||||||| ||||
seq2  CTGCCAATATAGGCACGTCAAGAACTCTGTAGTTCGCGAACTCTT-TCAT  49

seq1  GCCCA-CCCATAGCAACCCTATCTTCTCACCAGTACGAGCCACTGAAA--  93
      ||||| || ||||||| |||||||||||||||||||||||||||||||  
seq2  GCCCAGCCAATAGCAAGCCTATCTTCTCACCAGTACGAGCCACTGAAAAG  99

seq1  GACAACAGCATGAAAAGAGACACCGCTACCGTGCCACAGCAACTTCCTGC  143
       ||||||||||||||||||||||||||||||||| |||||||||| ||||
seq2  AACAACAGCATGAAAAGAGACACCGCTACCGTGCAACAGCAACTT-CTGC  148

seq1  TTTGAAAA--CATCTGTCTCCCTTGAAT-GGTTCCTGTTTGGTTTCTAGT  190
      ||||||||   ||||||||||||||||| |||||||||||||||||||||
seq2  TTTGAAAAACAATCTGTCTCCCTTGAATGGGTTCCTGTTTGGTTTCTAGT  198

seq1  AACCTCCTACCACCCG-CCACGAAGCCCCTTCACAGCGCAAGACAAACAC  239
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AACCTCCTACCACCCGCCCACGAAGCCCCTTCACAGCGCAAGACAAACAC  248

seq1  TGTAGGATTCTGC-AAAGATCCCAGGAGCCAATCTCCACTCACCC-TTCT  287
      ||||||||||||| ||||||||||||||||||||||||||||||| ||||
seq2  TGTAGGATTCTGCAAAAGATCCCAGGAGCCAATCTCCACTCACCCTTTCT  298

seq1  TCCAAGACCAGTCTGCATCTCCCCCAGGGCTGAACTCATGCAAGAACAAA  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGACCAGTCTGCATCTCCCCCAGGGCTGAACTCATGCAAGAACAAA  348

seq1  ACCCAACTTCCTCTTTCTAATTTTTGCAATATTGGTCACAAAACAGTGGC  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAACTTCCTCTTTCTAATTTTTGCAATATTGGTCACAAAACAGTGGC  398

seq1  ACATTTGCATTTCCGTAGCGATGACGCAACGTGAGAGGAGGTTGGTCTGC  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTGCATTTCCGTAGCGATGACGCAACGTGAGAGGAGGTTGGTCTGC  448

seq1  TGGTCCTGAAGGGCCTGGTCTGCTTGTGGTGGGATGACTTCGAAAGCGTA  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCTGAAGGGCCTGGTCTGCTTGTGGTGGGATGACTTCGAAAGCGTA  498

seq1  ATCCTTTTACTCGACCTGGCTCAGCCCTACCAGGTTCTGCAGTAGCAGCC  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTTTACTCGACCTGGCTCAGCCCTACCAGGTTCTGCAGTAGCAGCC  548

seq1  AGGGCTGAGCTTAGGTTTAACAAGTCACTGAGTAAAGACACCTCCTGCAT  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTGAGCTTAGGTTTAACAAGTCACTGAGTAAAGACACCTCCTGCAT  598

seq1  CTGGTTTGGTGGGCTCCTCTGAGCAGACCTGAGATTGATGTTGTCTATGG  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTTGGTGGGCTCCTCTGAGCAGACCTGAGATTGATGTTGTCTATGG  648

seq1  GGAAGAGGATCCATCAGGGGACAGGTGACCCAGGCCAGACAGACCTTGGT  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGGATCCATCAGGGGACAGGTGACCCAGGCCAGACAGACCTTGGT  698

seq1  GACTACAGAAAGTTGGAAGAAACATACCCCACCAGTGACATTGTTTCACG  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTACAGAAAGTTGGAAGAAACATACCCCACCAGTGACATTGTTTCACG  748

seq1  GTGACTCCAAGAGACCTGAGGGAACTTCTGGTTATCTGGCTGATGAGGAC  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTCCAAGAGACCTGAGGGAACTTCTGGTTATCTGGCTGATGAGGAC  798

seq1  TGCCCCAGCAGGGCTAAGCTCTGCCTCTTCCAGGCAGCCCTCAGGGGAAA  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCAGCAGGGCTAAGCTCTGCCTCTTCCAGGCAGCCCTCAGGGGAAA  848

seq1  GTCCCCTCATTATCTCAGGAAGTCAATAAATAATGGGGCAGGGGGTTAGC  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCTCATTATCTCAGGAAGTCAATAAATAATGGGGCAGGGGGTTAGC  898

seq1  CTAACATGCATATAGGCTGCAAATTTGACTCCATTTCAGTAATGTCTTCT  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACATGCATATAGGCTGCAAATTTGACTCCATTTCAGTAATGTCTTCT  948

seq1  TAATCTATCCTAAATTTTGTGTTTGTTTTAGGTTTTGTTGAGACAGTCTC  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTATCCTAAATTTTGTGTTTGTTTTAGGTTTTGTTGAGACAGTCTC  998

seq1  ACCAAGTAGTCCAGGATGGCCTTGGATTCTCTGTGTTGTCCAAACTCATT  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGTAGTCCAGGATGGCCTTGGATTCTCTGTGTTGTCCAAACTCATT  1048

seq1  TGAATTTACACTGTTTCAGTCTTTCAAATGCTGGGATCGCTACTGTGCAC  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTACACTGTTTCAGTCTTTCAAATGCTGGGATCGCTACTGTGCAC  1098

seq1  CATTGCATCAACTAATCTTGAATTC  1112
      |||||||||||||||||||||||||
seq2  CATTGCATCAACTAATCTTGAATTC  1123