BAC Information

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BAC

Clone NameB6Ng01-303L17
Chromosome13 (Build37)
Map Location 81,620,132 - 81,814,037
singlet/doubletdoublet
Overlap geneGpr98, Lysmd3, Polr3g
Upstream geneArrdc3, LOC666964, LOC100043074, LOC218368, LOC666979, EG666984
Downstream gene2900024O10Rik, Cetn3, LOC238756
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-303L17.bB6Ng01-303L17.g
ACCGA097461GA097462
length1,1411,152
definitionB6Ng01-303L17.b B6Ng01-303L17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,620,132 - 81,621,263)(81,812,897 - 81,814,037)
sequence
gaattctcagtagaattctactgtaggtaagaattctctacagtaagaag
tgaggtcgaggcaagggaaggaataaagactgaagaccgggcaagtatct
ctcactccttgaaggcgtattagaactaatttatcgcaacaacaaccttg
acacaagtgtagactcttgggtccttttacctgggcaaatgctacaactc
cataggcaccatcattggcgagaacagtgactctcacagaactgttaatg
ccaatctctgctccgcctcttggacttttaagctgaactctgaatgattc
ttctttttcgggaactgtgtcatcaaggacatttactgctatgattgctt
ccttgtcgccaggttcaaatatcagttcacctaaactagcatgagaagca
gatttaaaatgagccagtgatgaccactgaacggtacatatgggagatta
atcccagattcctatcacactgaataacattgaagtctcacaaggactga
aacattccataagtaaaacatgcatacaaaatatccatataatactggtc
aacttgatagactacatactaaaaatatgaacaacgaacagatgtctgta
ctaatggctgctatgttttatataaagcagtaactcaatcaatgaggtag
agaaatttggtgccatacacagaggtgggtaagttaaagacgctaagcat
cagctactgaacctacctaggaataaagtcagactggctggagacgtagg
tcaactcatataaatgggagtcagtggctcccactaaagcaattaaagtc
ttgcttgaattaagcgacttcactgtcacaaaagctgcatcgtgcgcagc
aggtgcttccaggacgaaagagaaggcattcagctctgagttccagcagt
aaagagcagacccgtcttgggcagttagaagtatgtggactggaaggaga
gaaaggaacagaaatgaagtgtcctgtgcccacctggttcttcttcacag
ctccaaggccaaccccgtcaaagctcacatgattcctagattaaagcaaa
tagggattctggttttttgaaacaacaagggattattaggtaaatttttt
ttgggttttttggtttttggtttttcgagggcaggttttct
gaattcatagtatgcatttcgaaactaacgtattaacaggatctgcctac
gggaggaaaatcggtttttcccagtgggagacttgttactcagtatcctc
tgaccggaaactggaggcctgcttcttctctcaggatcgagataacctta
atattaagcttaagtttgggtgccttagtttctccacttgtaaatggttt
cctatcaaaatttataggaaaatttatagtgtttagacactaaccagaat
tgaccaaatatgctttcttttacgctacagaaacaaccatgtcgtaaatt
gtttgctctgtacgtagtactgtggacgtgagatagctgtgaggaaccgt
ttcctgttgagttataattcgatttccagtcttgtacctgtgttagaaac
ggtagtttctttgtatgatccgagagattccaaaagtcttttctcaggtg
aaggatcactttcaatggcagtgcttctttaaatacttcctgatgggttc
gagagcccatcttgacagtatactgctgaacgcttacatccagttcccag
gagctgataaagatgctgtgagattcctagtggaaaccaagtctttaaag
ctgcagtgtgttagggaacttattaagttttagtaataatggcaaatgct
gttatttgggaataaaaagtacttcattctcttatgtttgataccggggc
caaacaagattccattcgtagacactctttggttgtttccttccagtatt
acaaagccacagataacttttccagttgggagccgcactggcagtgagtt
ctttcccagcatccactgtcttcaagggtgtgcgccctcccacccagagg
gaagcgctttcccacaggattgactcgggaaaccctttggcatctctcct
aaggatgcgcatcttcatttgaaagatcagctttacaactctaaacgtac
taattttgaggagagatgagattttccaggctgcttgactaccataaatc
ttgtttactttagctctgagtctatgaaatttaccttgtagagagataat
agaggtacttagtagagagagtacttactgggactggttgaataaaaata
tctttaacattctccgttaaacaaacctagttgcccacatgccctgattt
tt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_81620132_81621263
seq2: B6Ng01-303L17.b_50_1190

seq1  GAATTCTCAGTAGAATTCTACTGTAGGTAAGAATTCTCTACAGTAAGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGTAGAATTCTACTGTAGGTAAGAATTCTCTACAGTAAGAAG  50

seq1  TGAGGTCGAGGCAAGGGAAGGAATAAAGACTGAAGACCGGGCAAGTATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTCGAGGCAAGGGAAGGAATAAAGACTGAAGACCGGGCAAGTATCT  100

seq1  CTCACTCCTTGAAGGCGTATTAGAACTAATTTATCGCAACAACAACCTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTCCTTGAAGGCGTATTAGAACTAATTTATCGCAACAACAACCTTG  150

seq1  ACACAAGTGTAGACTCTTGGGTCCTTTTACCTGGGCAAATGCTACAACTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAGTGTAGACTCTTGGGTCCTTTTACCTGGGCAAATGCTACAACTC  200

seq1  CATAGGCACCATCATTGGCGAGAACAGTGACTCTCACAGAACTGTTAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGCACCATCATTGGCGAGAACAGTGACTCTCACAGAACTGTTAATG  250

seq1  CCAATCTCTGCTCCGCCTCTTGGACTTTTAAGCTGAACTCTGAATGATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCTCTGCTCCGCCTCTTGGACTTTTAAGCTGAACTCTGAATGATTC  300

seq1  TTCTTTTTCGGGAACTGTGTCATCAAGGACATTTACTGCTATGATTGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTTCGGGAACTGTGTCATCAAGGACATTTACTGCTATGATTGCTT  350

seq1  CCTTGTCGCCAGGTTCAAATATCAGTTCACCTAAACTAGCATGAGAAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTCGCCAGGTTCAAATATCAGTTCACCTAAACTAGCATGAGAAGCA  400

seq1  GATTTAAAATGAGCCAGTGATGACCACTGAACGGTACATATGGGAGATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTAAAATGAGCCAGTGATGACCACTGAACGGTACATATGGGAGATTA  450

seq1  ATCCCAGATTCCTATCACACTGAATAACATTGAAGTCTCACAAGGACTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAGATTCCTATCACACTGAATAACATTGAAGTCTCACAAGGACTGA  500

seq1  AACATTCCATAAGTAAAACATGCATACAAAATATCCATATAATACTGGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTCCATAAGTAAAACATGCATACAAAATATCCATATAATACTGGTC  550

seq1  AACTTGATAGACTACATACTAAAAATATGAACAACGAACAGATGTCTGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGATAGACTACATACTAAAAATATGAACAACGAACAGATGTCTGTA  600

seq1  CTAATGGCTGCTATGTTTTATATAAAGCAGTAACTCAATCAATGAGGTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGGCTGCTATGTTTTATATAAAGCAGTAACTCAATCAATGAGGTAG  650

seq1  AGAAATTTGGTGCCATACACAGAGGTGGGTAAGTTAAAGACGCTAAGCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTTGGTGCCATACACAGAGGTGGGTAAGTTAAAGACGCTAAGCAT  700

seq1  CAGCTACTGAACCTACCTAGGAATAAAGTCAGACTGGCTGGAGACGTAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTACTGAACCTACCTAGGAATAAAGTCAGACTGGCTGGAGACGTAGG  750

seq1  TCAACTCATATAAATGGGAGTCAGTGGCTCCCACTAAAGCAATTAAAGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTCATATAAATGGGAGTCAGTGGCTCCCACTAAAGCAATTAAAGTC  800

seq1  TTGCTTGAATTAAGCGACTTCACTGTCACAAAAGCTGCATCGTGCGCAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTGAATTAAGCGACTTCACTGTCACAAAAGCTGCATCGTGCGCAGC  850

seq1  AGGTGCTTCCAGGACGAAAGAGAAGGCATTCAGCTCTGAGTTCCAGCAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCTTCCAGGACGAAAGAGAAGGCATTCAGCTCTGAGTTCCAGCAGT  900

seq1  AAAGAGCAGACCCGTCTTGGGCAGTTAGAAGTATGTGGACTGGAAGGAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGCAGACCCGTCTTGGGCAGTTAGAAGTATGTGGACTGGAAGGAGA  950

seq1  GAAAAGGAACAGAAATGAAGTGTCCTGTGCCCACCT-GTTC-TCTTCACA  998
      | |||||||||||||||||||||||||||||||||| |||| ||||||||
seq2  G-AAAGGAACAGAAATGAAGTGTCCTGTGCCCACCTGGTTCTTCTTCACA  999

seq1  GCTCCAAAGCCAAACCCGTCAAAGCTCCACATGATTCCTAGATTAAAGCA  1048
      ||||||| ||||| |||||||||||| |||||||||||||||||||||||
seq2  GCTCCAAGGCCAACCCCGTCAAAGCT-CACATGATTCCTAGATTAAAGCA  1048

seq1  AATA-GGATTCTG--TTTTTGAAACAACA--GGAT--ATAAGTAAATTTT  1091
      |||| ||||||||  ||||||||||||||  ||||   || |||||||||
seq2  AATAGGGATTCTGGTTTTTTGAAACAACAAGGGATTATTAGGTAAATTTT  1098

seq1  TTTT-GTTTTTTTGTTTTTTGTTTTTTCGA-GGCAGGGTTTCT  1132
      |||| | ||||||| |||||| |||||||| |||||| |||||
seq2  TTTTGGGTTTTTTGGTTTTTGGTTTTTCGAGGGCAGGTTTTCT  1141

seq1: chr13_81812897_81814037
seq2: B6Ng01-303L17.g_68_1219 (reverse)

seq1  AAAAATCA--GCATGTGGGCAACTAGTTTTGTT--AC-GAGATTGTTAAA  45
      ||||||||  |||||||||||||||| ||||||  || |||| |||||||
seq2  AAAAATCAGGGCATGTGGGCAACTAGGTTTGTTTAACGGAGAATGTTAAA  50

seq1  GATA-TTTTAT--CACCAGTCCCAGTAAGTACTCTTCTCTAACTAGTACT  92
      |||| ||||||   |||||||||||||||||||| ||||||   ||||| 
seq2  GATATTTTTATTCAACCAGTCCCAGTAAGTACTC-TCTCTACTAAGTAC-  98

seq1  CTTATTTATCTCTCTACAAGGT-AATTTCATAGACTCAGAGCTAAAGTAA  141
      ||   ||||||||||||||||| |||||||||||||||||||||||||||
seq2  CTCTATTATCTCTCTACAAGGTAAATTTCATAGACTCAGAGCTAAAGTAA  148

seq1  ACAAGATTTATGGTAGTCAAGCAGCCTGGAAAATCTCATCTCTCCTCAAA  191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGATTTATGGTAGTCAAGCAGCCTGGAAAATCTCATCTCTCCTCAAA  198

seq1  ATTAGTACGTTTAGAGTTGT-AAGCTGATCTTTCAAATGAAGATGCGCAT  240
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ATTAGTACGTTTAGAGTTGTAAAGCTGATCTTTCAAATGAAGATGCGCAT  248

seq1  CCTTAGGAGAGATGCC-AAGGGTTT-CCGAGTCAATCCTGTGGGAAAGCG  288
      |||||||||||||||| |||||||| ||||||||||||||||||||||||
seq2  CCTTAGGAGAGATGCCAAAGGGTTTCCCGAGTCAATCCTGTGGGAAAGCG  298

seq1  CTTCCCTCTGGGT-GGAAGGCGCACACCCTTGAAGACAGTGGATGCTGGG  337
      ||||||||||||| ||| ||||||||||||||||||||||||||||||||
seq2  CTTCCCTCTGGGTGGGAGGGCGCACACCCTTGAAGACAGTGGATGCTGGG  348

seq1  AAAGAACTCACTGCCAGTGCGGCTCCCAACTGGAAAAGTTATCTGTGGCT  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACTCACTGCCAGTGCGGCTCCCAACTGGAAAAGTTATCTGTGGCT  398

seq1  TTGTAATACTGGAAGGAAACAACCAAAGAGTGTCTACGAATGGAATCTTG  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAATACTGGAAGGAAACAACCAAAGAGTGTCTACGAATGGAATCTTG  448

seq1  TTTGGCCCCGGTATCAAACATAAGAGAATGAAGTACTTTTTATTCCCAAA  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCCCCGGTATCAAACATAAGAGAATGAAGTACTTTTTATTCCCAAA  498

seq1  TAACAGCATTTGCCATTATTACTAAAACTTAATAAGTTCCCTAACACACT  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGCATTTGCCATTATTACTAAAACTTAATAAGTTCCCTAACACACT  548

seq1  GCAGCTTTAAAGACTTGGTTTCCACTAGGAATCTCACAGCATCTTTATCA  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTTTAAAGACTTGGTTTCCACTAGGAATCTCACAGCATCTTTATCA  598

seq1  GCTCCTGGGAACTGGATGTAAGCGTTCAGCAGTATACTGTCAAGATGGGC  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTGGGAACTGGATGTAAGCGTTCAGCAGTATACTGTCAAGATGGGC  648

seq1  TCTCGAACCCATCAGGAAGTATTTAAAGAAGCACTGCCATTGAAAGTGAT  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGAACCCATCAGGAAGTATTTAAAGAAGCACTGCCATTGAAAGTGAT  698

seq1  CCTTCACCTGAGAAAAGACTTTTGGAATCTCTCGGATCATACAAAGAAAC  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCACCTGAGAAAAGACTTTTGGAATCTCTCGGATCATACAAAGAAAC  748

seq1  TACCGTTTCTAACACAGGTACAAGACTGGAAATCGAATTATAACTCAACA  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCGTTTCTAACACAGGTACAAGACTGGAAATCGAATTATAACTCAACA  798

seq1  GGAAACGGTTCCTCACAGCTATCTCACGTCCACAGTACTACGTACAGAGC  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACGGTTCCTCACAGCTATCTCACGTCCACAGTACTACGTACAGAGC  848

seq1  AAACAATTTACGACATGGTTGTTTCTGTAGCGTAAAAGAAAGCATATTTG  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATTTACGACATGGTTGTTTCTGTAGCGTAAAAGAAAGCATATTTG  898

seq1  GTCAATTCTGGTTAGTGTCTAAACACTATAAATTTTCCTATAAATTTTGA  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATTCTGGTTAGTGTCTAAACACTATAAATTTTCCTATAAATTTTGA  948

seq1  TAGGAAACCATTTACAAGTGGAGAAACTAAGGCACCCAAACTTAAGCTTA  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAACCATTTACAAGTGGAGAAACTAAGGCACCCAAACTTAAGCTTA  998

seq1  ATATTAAGGTTATCTCGATCCTGAGAGAAGAAGCAGGCCTCCAGTTTCCG  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAAGGTTATCTCGATCCTGAGAGAAGAAGCAGGCCTCCAGTTTCCG  1048

seq1  GTCAGAGGATACTGAGTAACAAGTCTCCCACTGGGAAAAACCGATTTTCC  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAGGATACTGAGTAACAAGTCTCCCACTGGGAAAAACCGATTTTCC  1098

seq1  TCCCGTAGGCAGATCCTGTTAATACGTTAGTTTCGAAATGCATACTATGA  1137
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGTAGGCAGATCCTGTTAATACGTTAGTTTCGAAATGCATACTATGA  1148

seq1  ATTC  1141
      ||||
seq2  ATTC  1152