BAC Information

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BAC

Clone NameB6Ng01-304A16
Chromosome13 (Build37)
Map Location 91,420,877 - 91,591,034
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC624190, EG435376, Rps23, Atg10, LOC100042959
Downstream geneSsbp2, LOC666889, Acot12, Zcchc9, Ckmt2, Rasgrf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-304A16.bB6Ng01-304A16.g
ACCGA097693GA097694
length1,1021,121
definitionB6Ng01-304A16.b B6Ng01-304A16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,420,877 - 91,421,970)(91,589,912 - 91,591,034)
sequence
gaattctgcctcttcctttctccctttatgtcctgattgtccctggttga
agatgcttcttccactatatgtggctcctaccatgacatattgtgcttac
agaagcccaaagtgatggatgcattatctagacttagaccaggaacacct
tcctcctgtaaattgattagcttgggtattttttgcctgcatgagaaact
tagtgaatccacaaataccctctttcgctttcagttcactctggtttgtg
ttcattggaattagcatgtagaagtcacaaaacagaactctagtagatcc
agtatgtaccatcaaatgaggatgcaagaaaaagatgatatatgttaaca
accagagccgtaagatatctaggaataaactcataagcaagtgttctaga
cccaaaggaaggaaatataaatcattgctgagcacacaagaaaagaatct
gaatggaagtaatgaagaccagacccatttcttgtagtatgataatgtca
atatctccccaaatgatcacgtaagtttaaggctaatctactacagcttt
gatctatctaatgaccatggaaagccctctaaggtgccatacttatgctg
agatcataatgataactacatagatatctgaaaagcttaaagagcattct
aagccaaaagcggagcataagcaagggctctgaggtagccagtgcaacaa
tccatcagtagatataaccatgtcagttagaggggaaaacctgagaaaga
atttgtcaccagtagaggtcagagactgggtaggaataattcataggaga
cttctgattatgctgaagaaagagatgctgggtgtggtggcacatgcctg
caatccaaggctggacttgggagttttgactgtgcttgtgccgctgggag
acggggaagagttgagaacagagtgggggccgtgggggctcctgctcgga
ccttgcggggatgagagagtccttggcttgtctgctgtgtggttttggcc
ttggtggaaggccatggcctgggagcactgagaggccttctgcaaggaga
ttagcgctggcagaagccttcctccattgccactctcacagaggattcct
ga
gaattccaaggatgcctaattaaggagagagagaaaaaaatattcatcct
agtgtccttctggacccagaccattctgaactctgacagcactgacatcc
atcaaatcaaacaatgaaatcaactttggttacttagcataataaacttg
taatactctattagtgaggggatcaatgtctcctgtcttggaaataaaca
tcagagcttggcctcaacatttaggtaacggcagagtccattattttgtg
gcaacattcgattacattgacatcaagacagatttattaaaataataaat
agtacatgattttcagcctttcatttccaaacctcaccactgccgtggcc
aaggtgatttgaaacctgtcatctatatcttttacttattatcgatgacc
tctgttattgcatttttgttatctggcagcttatacgccaagcaattttt
aaaattaatttgtaaggtggaaattttaagttacttagcaagaacaatgc
cagtaataaggagaaggagtaccagagagttaagggttggagaggtttcc
tggcatcgtatgtgagcagggatgacttcagatgtgcttttcagagtccc
agtgtggctaactgcaaaggctcggttccttcttcctcctcccaggttcc
agccccagggcctttgccctaactgtttcctttgcctggaatgtttttcc
ctctgcttgttctcattattcaagacttctggaatgttaattccagagat
atattctctgagagcccctgaaagatgtctaatacaacaccctaaaatat
gcttaatcccacatcttcagtcatcccttgatctttcttcttctctttat
agtcacacacgggagatctaggacagcatctagtacacaataacaataag
tattagctgaatgattctaaacatcctagccccttttcatgttcccacta
ttcatgccagccctctacccactctcatagaacagagctttttacattct
taggaagaaaaaagatggacaaaaaaatctcagcgccttgctagatgtaa
agtttctggagtccactttaatgctcagtattccaactgattagccagaa
tttcggtgagcaaggactaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_91420877_91421970
seq2: B6Ng01-304A16.b_46_1147

seq1  GAATTCTGCCTCTTCCTTTCTCCCTTTATGTCCTGATTGTCCCTGGTTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCCTCTTCCTTTCTCCCTTTATGTCCTGATTGTCCCTGGTTGA  50

seq1  AGATGCTTCTTCCACTATATGTGGCTCCTACCATGACATATTGTGCTTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCTTCTTCCACTATATGTGGCTCCTACCATGACATATTGTGCTTAC  100

seq1  AGAAGCCCAAAGTGATGGATGCATTATCTAGACTTAGACCAGGAACACCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCCCAAAGTGATGGATGCATTATCTAGACTTAGACCAGGAACACCT  150

seq1  TCCTCCTGTAAATTGATTAGCTTGGGTATTTTTTGCCTGCATGAGAAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTGTAAATTGATTAGCTTGGGTATTTTTTGCCTGCATGAGAAACT  200

seq1  TAGTGAATCCACAAATACCCTCTTTCGCTTTCAGTTCACTCTGGTTTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGAATCCACAAATACCCTCTTTCGCTTTCAGTTCACTCTGGTTTGTG  250

seq1  TTCATTGGAATTAGCATGTAGAAGTCACAAAACAGAACTCTAGTAGATCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTGGAATTAGCATGTAGAAGTCACAAAACAGAACTCTAGTAGATCC  300

seq1  AGTATGTACCATCAAATGAGGATGCAAGAAAAAGATGATATATGTTAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGTACCATCAAATGAGGATGCAAGAAAAAGATGATATATGTTAACA  350

seq1  ACCAGAGCCGTAAGATATCTAGGAATAAACTCATAAGCAAGTGTTCTAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAGCCGTAAGATATCTAGGAATAAACTCATAAGCAAGTGTTCTAGA  400

seq1  CCCAAAGGAAGGAAATATAAATCATTGCTGAGCACACAAGAAAAGAATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAGGAAGGAAATATAAATCATTGCTGAGCACACAAGAAAAGAATCT  450

seq1  GAATGGAAGTAATGAAGACCAGACCCATTTCTTGTAGTATGATAATGTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGAAGTAATGAAGACCAGACCCATTTCTTGTAGTATGATAATGTCA  500

seq1  ATATCTCCCCAAATGATCACGTAAGTTTAAGGCTAATCTACTACAGCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTCCCCAAATGATCACGTAAGTTTAAGGCTAATCTACTACAGCTTT  550

seq1  GATCTATCTAATGACCATGGAAAGCCCTCTAAGGTGCCATACTTATGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTATCTAATGACCATGGAAAGCCCTCTAAGGTGCCATACTTATGCTG  600

seq1  AGATCATAATGATAACTACATAGATATCTGAAAAGCTTAAAGAGCATTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCATAATGATAACTACATAGATATCTGAAAAGCTTAAAGAGCATTCT  650

seq1  AAGCCAAAAGCGGAGCATAAGCAAGGGCTCTGAGGTAGCCAGTGCAACAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAAAAGCGGAGCATAAGCAAGGGCTCTGAGGTAGCCAGTGCAACAA  700

seq1  TCCATCAGTAGATATAACCATGTCAGTTAGAGGGGAAAACCTGAGAAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCAGTAGATATAACCATGTCAGTTAGAGGGGAAAACCTGAGAAAGA  750

seq1  ATTTGTCACCAGTAGAGGTCAGAGACTGGGTAGGAATAATTCATAGGAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTCACCAGTAGAGGTCAGAGACTGGGTAGGAATAATTCATAGGAGA  800

seq1  CTTCTGATTATGCTGAAGAAAGAGATGCTGGGTGTGGTGGCACATGCCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGATTATGCTGAAGAAAGAGATGCTGGGTGTGGTGGCACATGCCTG  850

seq1  CAATCCAAGGCTGGACTTGGGAGTTTTGACTGTGCTTGTGCCGCTGGGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCAAGGCTGGACTTGGGAGTTTTGACTGTGCTTGTGCCGCTGGGAG  900

seq1  ACGGGGAAGAGTTGAGAACAGAGTGGGGGCCGT-GGGGCTCCTGCTCGGA  949
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ACGGGGAAGAGTTGAGAACAGAGTGGGGGCCGTGGGGGCTCCTGCTCGGA  950

seq1  CC-TGCGGGGATGAGAGAGTCCTTGGCTTGTCTGCTGTGTGGTTT--GGC  996
      || ||||||||||||||||||||||||||||||||||||||||||  | |
seq2  CCTTGCGGGGATGAGAGAGTCCTTGGCTTGTCTGCTGTGTGGTTTTGGCC  1000

seq1  TTGGTGG-AGGCCATGG-CTGGGAGCACTGAGAGGCCTTCTGC-AGGAGA  1043
      ||||||| ||||||||| ||||||||||||||||||||||||| ||||||
seq2  TTGGTGGAAGGCCATGGCCTGGGAGCACTGAGAGGCCTTCTGCAAGGAGA  1050

seq1  TTAGGCGGCTGGCAGAAGGCCTTCTCCATTG-CAC-CCCACAGAGGA-TC  1090
      ||||   ||||||||||| | | |||||||| ||| | ||||||||| ||
seq2  TTAG--CGCTGGCAGAAGCCTTCCTCCATTGCCACTCTCACAGAGGATTC  1098

seq1  CTGA  1094
      ||||
seq2  CTGA  1102

seq1: chr13_91589912_91591034
seq2: B6Ng01-304A16.g_66_1186 (reverse)

seq1  TGTATGTCC-TGCTCACCCAAATTCTGCTAAATCAGTTTGGATACTGGAG  49
      |||| |||| |||||||| ||||||||   |||||||| | ||||| |||
seq2  TGTA-GTCCTTGCTCACCGAAATTCTGGCTAATCAGTTGGAATACT-GAG  48

seq1  CAATAAAGTGGACT-CAGAAACTTTACCATCTAAGCAGGCGCTGAGATTT  98
      || ||||||||||| ||||||||||| ||||||   ||||||||||||||
seq2  CATTAAAGTGGACTCCAGAAACTTTA-CATCTAGCAAGGCGCTGAGATTT  97

seq1  TTTTGTCCATTCTTTTTTCTTCCTAAGAATGTAAAAAGCTCTGTTCTATG  148
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCCA-TCTTTTTTCTTCCTAAGAATGTAAAAAGCTCTGTTCTATG  146

seq1  AGAGTGGGTAGAGGGCTGGCATGAATAGTGGGAACATGAAAAGGGGCTAG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGGGTAGAGGGCTGGCATGAATAGTGGGAACATGAAAAGGGGCTAG  196

seq1  GATGTTTAGAATCATTCAGCTAATACTTATTGTTATTGTGTACTAGATGC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTTAGAATCATTCAGCTAATACTTATTGTTATTGTGTACTAGATGC  246

seq1  TGTCCTAGATCTCCCGTGTGTGACTATAAAGAGAAGAAGAAAGATCAAGG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTAGATCTCCCGTGTGTGACTATAAAGAGAAGAAGAAAGATCAAGG  296

seq1  GATGACTGAAGATGTGGGATTAAGCATATTTTAGGGTGTTGTATTAGACA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACTGAAGATGTGGGATTAAGCATATTTTAGGGTGTTGTATTAGACA  346

seq1  TCTTTCAGGGGCTCTCAGAGAATATATCTCTGGAATTAACATTCCAGAAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCAGGGGCTCTCAGAGAATATATCTCTGGAATTAACATTCCAGAAG  396

seq1  TCTTGAATAATGAGAACAAGCAGAGGGAAAAACATTCCAGGCAAAGGAAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAATAATGAGAACAAGCAGAGGGAAAAACATTCCAGGCAAAGGAAA  446

seq1  CAGTTAGGGCAAAGGCCCTGGGGCTGGAACCTGGGAGGAGGAAGAAGGAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTAGGGCAAAGGCCCTGGGGCTGGAACCTGGGAGGAGGAAGAAGGAA  496

seq1  CCGAGCCTTTGCAGTTAGCCACACTGGGACTCTGAAAAGCACATCTGAAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGCCTTTGCAGTTAGCCACACTGGGACTCTGAAAAGCACATCTGAAG  546

seq1  TCATCCCTGCTCACATACGATGCCAGGAAACCTCTCCAACCCTTAACTCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCCTGCTCACATACGATGCCAGGAAACCTCTCCAACCCTTAACTCT  596

seq1  CTGGTACTCCTTCTCCTTATTACTGGCATTGTTCTTGCTAAGTAACTTAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTACTCCTTCTCCTTATTACTGGCATTGTTCTTGCTAAGTAACTTAA  646

seq1  AATTTCCACCTTACAAATTAATTTTAAAAATTGCTTGGCGTATAAGCTGC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCCACCTTACAAATTAATTTTAAAAATTGCTTGGCGTATAAGCTGC  696

seq1  CAGATAACAAAAATGCAATAACAGAGGTCATCGATAATAAGTAAAAGATA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAACAAAAATGCAATAACAGAGGTCATCGATAATAAGTAAAAGATA  746

seq1  TAGATGACAGGTTTCAAATCACCTTGGCCACGGCAGTGGTGAGGTTTGGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGACAGGTTTCAAATCACCTTGGCCACGGCAGTGGTGAGGTTTGGA  796

seq1  AATGAAAGGCTGAAAATCATGTACTATTTATTATTTTAATAAATCTGTCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAAGGCTGAAAATCATGTACTATTTATTATTTTAATAAATCTGTCT  846

seq1  TGATGTCAATGTAATCGAATGTTGCCACAAAATAATGGACTCTGCCGTTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTCAATGTAATCGAATGTTGCCACAAAATAATGGACTCTGCCGTTA  896

seq1  CCTAAATGTTGAGGCCAAGCTCTGATGTTTATTTCCAAGACAGGAGACAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAATGTTGAGGCCAAGCTCTGATGTTTATTTCCAAGACAGGAGACAT  946

seq1  TGATCCCCTCACTAATAGAGTATTACAAGTTTATTATGCTAAGTAACCAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCCCTCACTAATAGAGTATTACAAGTTTATTATGCTAAGTAACCAA  996

seq1  AGTTGATTTCATTGTTTGATTTGATGGATGTCAGTGCTGTCAGAGTTCAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGATTTCATTGTTTGATTTGATGGATGTCAGTGCTGTCAGAGTTCAG  1046

seq1  AATGGTCTGGGTCCAGAAGGACACTAGGATGAATATTTTTTTCTCTCTCT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTCTGGGTCCAGAAGGACACTAGGATGAATATTTTTTTCTCTCTCT  1096

seq1  CCTTAATTAGGCATCCTTGGAATTC  1123
      |||||||||||||||||||||||||
seq2  CCTTAATTAGGCATCCTTGGAATTC  1121