BAC Information

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BAC

Clone NameB6Ng01-304C07
Chromosome13 (Build37)
Map Location 111,346,862 - 111,546,427
singlet/doubletdoublet
Overlap genenone
Upstream genePde4d, LOC100040577, Rab3c, EG432803, 9830130M13Rik, Plk2
Downstream geneLOC100040614, LOC668159, 4732495G21Rik, LOC100040640, EG621953, Gpbp1, LOC100040666, Mier3, Map3k1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-304C07.bB6Ng01-304C07.g
ACCGA097771GA097772
length3721,049
definitionB6Ng01-304C07.b B6Ng01-304C07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,546,059 - 111,546,427)(111,346,862 - 111,347,893)
sequence
acttatgatccattgtaaatatgttccctaaacactcaggtgagaatttt
aatgcaaaagctagttaaaaaaataaaggcaagcctgcggtatgtcagta
tttcagtgattgcatgtgatgttccatcggcttctgttgcatcacataga
aactcaacgggaggagaggcccttggtcctgtgaaggctcgatgccccag
tgtagggagatgccagggccaggaattgggagtgggtaggttgttgagca
ggaggaggtgggaggggaaaccatgaaaggggataacccttggaatgtaa
agaaataaaatttctaatttaaaaatgtttaaaaaaaaaaaaggaaattg
cttttgcttctgaagcatataa
gaattcaatggcttgtttactaaaaggagaccattgctgctgggagcttg
gagaattgttatggtccagaattgttaagcttaggggggagagagagaga
gagagagagagagagagagacagagagagagagagagagagagagagaga
gcagaaatcggcataaggagatgtggcctgttctgggtaggatgttctca
aaataaccagaaagccccagtgaaggcgttaagcttgagtgttctgtaag
atgactaaaagctttaggagtatttaaaggagatgaacagcagggaggga
cagggtaggaagtcaatctggccagaacagaacacttcaaaatggtttta
tctgaacgttttgaacccttgacactgagtcacttaaaggaagtagccaa
tccccaaggagtgactgaagacacgggatatagatgctgtagccccgggg
tgcatttcccagtatctagaagtcgggtacatattttgccaaaccaggct
gtcctgcctggggcaattccaaagtagaggtgggtgctgagccaaagcga
tctcttttcatgtgcacagacctatgcacctcataccaccaccccaaacc
tggaatcaccatcaccagcatcattactgtgcccggagatatattaggag
tggctacagcagcaacaggaccatcagggaagaagcagaatttgttagat
gtagtgattagggtttggagctttttgctgttgttgttttcgttgtttgt
tttgatttttttttttttttttttgctgtggatgtatctcctgctatttt
ttttccatcaaaaggaatattctgtgactagccctatgttcgaaggggca
gggttggcttaaatacccaacagttaaatgaaacatttcatttgagctag
caagtccttccccatgcctgtggctgtgttgaatagactgaacatacagc
tgcttgtaagttctcagcgtttctgaagcccaagttcaaatcctgggggc
ttggaacagatgttcaggaaggaagcactgttcattctcttttggaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_111546059_111546427
seq2: B6Ng01-304C07.b_45_413 (reverse)

seq1  TCAGAAGCAGAAGAAATTTCCTTTTTTTTTTTTTAACATTTTTTAATTAG  50
      ||||||||| ||| ||||||||||||||||||| ||||||||| ||||||
seq2  TCAGAAGCAAAAGCAATTTCCTTTTTTTTTTTTAAACATTTTTAAATTAG  50

seq1  ATATTTTCTTTCTTTACATTTCAAGTGTTATCCCCTTTCCTGGTTTCCCC  100
      | ||||| |||||||||||| |||| ||||||||||||| ||||||||||
seq2  AAATTTTATTTCTTTACATTCCAAGGGTTATCCCCTTTCATGGTTTCCCC  100

seq1  TCCCACCTCCTCCTGCTCAACAACCTACCCACTCCCAATTCCTGGCCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACCTCCTCCTGCTCAACAACCTACCCACTCCCAATTCCTGGCCCTG  150

seq1  GCATCTCCCTACACTGGGGCATCGAGCCTTCACAGGACCAAGGGCCTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTCCCTACACTGGGGCATCGAGCCTTCACAGGACCAAGGGCCTCTC  200

seq1  CTCCCGTTGAGTTTCTATGTGATGCAACAGAAGCCGATGGAACATCACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCGTTGAGTTTCTATGTGATGCAACAGAAGCCGATGGAACATCACAT  250

seq1  GCAATCACTGAAATACTGACATACCGCAGGCTTGCCTTTATTTTTTTAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCACTGAAATACTGACATACCGCAGGCTTGCCTTTATTTTTTTAAC  300

seq1  TAGCTTTTGCATTAAAATTCTCACCTGAGTGTTTAGGGAACATATTTACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTTTGCATTAAAATTCTCACCTGAGTGTTTAGGGAACATATTTACA  350

seq1  ATGGATCATAAGTGAATTC  369
      |||||||||||||||||||
seq2  ATGGATCATAAGTGAATTC  369

seq1: chr13_111346862_111347893
seq2: B6Ng01-304C07.g_68_1116

seq1  GAATTCAATGGCTTGTTTACTAAAAGGAGACCATTGCTGCTGGGAGCTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGGCTTGTTTACTAAAAGGAGACCATTGCTGCTGGGAGCTTG  50

seq1  GAGAATTGTTATGGTCCAGAATTGTTAAGCTTAGGGGGGAGAGAGAGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATTGTTATGGTCCAGAATTGTTAAGCTTAGGGGGGAGAGAGAGAGA  100

seq1  GAGAGAGAGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  150

seq1  GCAGAAATCGGCATAAGGAGATGTGGCCTGTTCTGGGTAGGATGTTCTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAATCGGCATAAGGAGATGTGGCCTGTTCTGGGTAGGATGTTCTCA  200

seq1  AAATAACCAGAAAGCCCCAGTGAAGGCGTTAAGCTTGAGTGTTCTGTAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAACCAGAAAGCCCCAGTGAAGGCGTTAAGCTTGAGTGTTCTGTAAG  250

seq1  ATGACTAAAAGCTTTAGGAGTATTTAAAGGAGATGAACAGCAGGGAGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTAAAAGCTTTAGGAGTATTTAAAGGAGATGAACAGCAGGGAGGGA  300

seq1  CAGGGTAGGAAGTCAATCTGGCCAGAACAGAACACTTCAAAATGGTTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTAGGAAGTCAATCTGGCCAGAACAGAACACTTCAAAATGGTTTTA  350

seq1  TCTGAACGTTTTGAACCCTTGACACTGAGTCACTTAAAGGAAGTAGCCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAACGTTTTGAACCCTTGACACTGAGTCACTTAAAGGAAGTAGCCAA  400

seq1  TCCCCAAGGAGTGACTGAAGACACGGGATATAGATGCTGTAGCTTTGGGG  450
      |||||||||||||||||||||||||||||||||||||||||||   ||||
seq2  TCCCCAAGGAGTGACTGAAGACACGGGATATAGATGCTGTAGCCCCGGGG  450

seq1  TGCATTTCCCAGTATCTAGAAGTCGGGTACATATTTTGCCAAACCAGGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTCCCAGTATCTAGAAGTCGGGTACATATTTTGCCAAACCAGGCT  500

seq1  GTCCTGCCTGGGGCAATTCCAAAGTAGAGGTGGGTGCTGAGCCAAAGCGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGCCTGGGGCAATTCCAAAGTAGAGGTGGGTGCTGAGCCAAAGCGA  550

seq1  TCTCTTTTCATGTGCACAGACCTATGCACCTCATACCACCACCCCAAACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTTCATGTGCACAGACCTATGCACCTCATACCACCACCCCAAACC  600

seq1  TGGAATCACCATCACCAGCATCATTACTGTGCCCGGAGATATATTAGGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATCACCATCACCAGCATCATTACTGTGCCCGGAGATATATTAGGAG  650

seq1  TGGCTACAGCAGCAACAGGACCATCAGGGAAGAAGCAGAATTTGTTAGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTACAGCAGCAACAGGACCATCAGGGAAGAAGCAGAATTTGTTAGAT  700

seq1  GTAGTGATTAGGGTTTGGAGCTTTTTGCTGTTGTTGTTTTCGTTGTTTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GTAGTGATTAGGGTTTGGAGCTTTTTGCTGTTGTTGTTTTCGTTG-TTTG  749

seq1  TTTTGA--TTTTTTTTTTTTTTTTTGCTTGTGGATGTATCTCCTGCTA-T  797
      ||||||  ||||||||||||||||||| |||||||||||||||||||| |
seq2  TTTTGATTTTTTTTTTTTTTTTTTTGC-TGTGGATGTATCTCCTGCTATT  798

seq1  TTTTTTCCATC-AAAGGAATATTCTGTGACTAGCCCTATGTTCGA--GGG  844
      ||||||||||| |||||||||||||||||||||||||||||||||  |||
seq2  TTTTTTCCATCAAAAGGAATATTCTGTGACTAGCCCTATGTTCGAAGGGG  848

seq1  CAGGGTTG--CTAAATACCCAACAG-TAAATG-AACA-TTCATTTGAGC-  888
      ||||||||   |||||||||||||| |||||| |||| ||||||||||| 
seq2  CAGGGTTGGCTTAAATACCCAACAGTTAAATGAAACATTTCATTTGAGCT  898

seq1  AGCAAGTCCTTCCCCATGCATGT-GCTGTGTTGAA-AG-CTGACCATACA  935
      ||||||||||||||||||| ||| ||||||||||| || |||| ||||||
seq2  AGCAAGTCCTTCCCCATGCCTGTGGCTGTGTTGAATAGACTGAACATACA  948

seq1  GCTGC-TGTGAGTTCTCAGCG-TTCTG-AGCCAAAGTTCAGATCCTGGGG  982
      ||||| ||| ||||||||||| ||||| |||| ||||||| |||||||||
seq2  GCTGCTTGTAAGTTCTCAGCGTTTCTGAAGCCCAAGTTCAAATCCTGGGG  998

seq1  GCTTGG-ACAGATGTTCAGGAGGAAAGCAACTGTCCATTCTCTTTT-GAA  1030
      |||||| |||||||||||||| | |||| ||||| ||||||||||| |||
seq2  GCTTGGAACAGATGTTCAGGAAGGAAGC-ACTGTTCATTCTCTTTTGGAA  1047

seq1  TG  1032
      ||
seq2  TG  1049