BAC Information

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BAC

Clone NameB6Ng01-304D20
Chromosome13 (Build37)
Map Location 82,019,201 - 82,020,140
singlet/doubletsinglet
Overlap genenone
Upstream geneArrdc3, LOC666964, LOC100043074, LOC218368, LOC666979, EG666984, Gpr98, Lysmd3, Polr3g, 2900024O10Rik, Cetn3
Downstream geneLOC238756
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-304D20.bB6Ng01-304D20.g
ACCGA097845GA097846
length1,1261,177
definitionB6Ng01-304D20.b B6Ng01-304D20.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttgtttagctctgtaccccatttttaatggggttatttcaatt
tctggagtccaacttcttgagttctttatatatattggatattagtcccc
tattggatttaggattggtaaagatctttccccaatcttttggtggcctt
tttgtcttattgacagtgttctttgcctttacagaagctttgaaatttta
tgaggtcccatttgttgattcttgatcttacagaacaagccattggtgtt
ttctgttcaggagtttttcccctgtgcccatatcttcaaggcttttcccc
actttctcctctataagtttcagtgtctctggttttatctggagttcctt
gatccacttagaccttaaagcattttctttaaaagtaggaatgagacaag
ggtgtctactctttctaatcttattcaacacagtgctcaggtggttctgt
ttcttctttttcttccccttcacttgtttttcttgttctttcttcccctc
cttccttctttgttatgggacagataaaaaatatatagccctgtatagcc
ctggctgtcctggaactcactccgtagaccaggctggactcgaacacaga
aatccacctgcctctgccgcctgatgttttgttcttttaaaattatatct
ttttttacataaaatgttttaaaaattcaactatattttgagcatattct
tcccctcctccaagttcttccagaacctcttcttctccctacctacccaa
ctcatgttatttttcaaaagctcagttcaacagcaaatcctcccaaccta
aaaatattctcccccaaaacaaaccaacaaaagtcccaccaaatgataaa
gagcccaagagaagtcatgaaaatcaaacacaattcacacactcagagtc
ccataaaaacactaacctagaagtgctcaggtacttaactagagcaatga
ggcaggagaagaaataaaaaaatacaaataattaaaggaagagttacacc
ttagatgatattaattctaatactgcaacctcccccaaccctcccccccc
cccccgaggctccagcacaatctcatatctgaatgagccttttcaacata
gccattccaggatcacatataggaag
gaattctgtgctaaaaccattttgtcctagattttgggggttgcagggtg
agttggaaaacttttagttactgttcctatttcaagagactataagtctg
tttaaattgcttatctgatcttgatttaactttgatagatatcttgtacc
aaaaaaattatccatttattttagatattccaatttagtgaagtttcaag
attgcatccttacagtattctagatttccttggtgtctgttgctatgttc
tacatttcatttctaagtttgttaatttggatattttctctcctcctttt
agttaatttcaataccgatttgtcaatataactgattttcacaaaaaaaa
aaaaaacctgccaccttatttcattggttcttcctgctgttttcttctaa
ttgctgtttccacttttattcatgtcagcccttactgtgattatttcttg
cagtctactccttttggatgttatttcttccttttgttctagagttttca
ggtgtacagttaagttacacctgaaagatgtgagatttctccattttttt
ttttttatgtaggcacttagtcctatatacttgcttcttagaaccatttt
attttgtcctatgtttgggtgtgttgtgttttcattttcattcagttcta
aaaaatgtttttaaattctttcttaattcactagtgagttgttcagttta
tctgaatttgtaagctttatgatatttctattattgttgatatacagctt
taaaccatagtggtcagataggatgcagggaattacttcaatttcccttg
taactgttaaggcttgctttgtgtttggatatgcagtggattttgaagaa
agttccatgagatgataagaagaatatatatcttttgtgttgcggtgaaa
tgttttgaaactatctgtttggtccattgggtttatagcatcattaattc
tccaggcatttctctgtttgcttttttctctgatgggacctggtctgtgg
ctaagtagatactgaagcccaccacatattccacttgggtggaggagtca
atatgtgatataagtggtataagtgcttcttttggacctgttgtctttgg
tggagcatgatattaattgcatataaggttttctgaatgcaattccgagg
tctctctgatcccctagataatcagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_82019201_82020140
seq2: B6Ng01-304D20.b_225_1171

seq1  TACAGAAGCTTTGAAATTTTATGAGGTCCCATTTGTTGATTCTTGATCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAAGCTTTGAAATTTTATGAGGTCCCATTTGTTGATTCTTGATCTT  50

seq1  ACAGAACAAGCCATTGGTGTTTTCTGTTCAGGAGTTTTTCCCCTGTGCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAACAAGCCATTGGTGTTTTCTGTTCAGGAGTTTTTCCCCTGTGCCC  100

seq1  ATATCTTCAAGGCTTTTCCCCACTTTCTCCTCTATAAGTTTCAGTGTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTTCAAGGCTTTTCCCCACTTTCTCCTCTATAAGTTTCAGTGTCTC  150

seq1  TGGTTTTATCTGGAGTTCCTTGATCCACTTAGACCTTAAAGCATTTTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTATCTGGAGTTCCTTGATCCACTTAGACCTTAAAGCATTTTCTT  200

seq1  TAAAAGTAGGAATGAGACAAGGGTGTCTACTCTTTCTAATCTTATTCAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGTAGGAATGAGACAAGGGTGTCTACTCTTTCTAATCTTATTCAAC  250

seq1  ACAGTGCTCAGGTGGTTCTGTTTCTTCTTTTTCTTCCCCTTCACTTGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGCTCAGGTGGTTCTGTTTCTTCTTTTTCTTCCCCTTCACTTGTTT  300

seq1  TTCTTGTTCTTTCTTCCCCTCCTTCCTTCTTTGTTATGGGACAGATAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGTTCTTTCTTCCCCTCCTTCCTTCTTTGTTATGGGACAGATAAAA  350

seq1  AATATATAGCCCTGTATAGCCCTGGCTGTCCTGGAACTCACTCCGTAGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATAGCCCTGTATAGCCCTGGCTGTCCTGGAACTCACTCCGTAGAC  400

seq1  CAGGCTGGACTCGAACACAGAAATCCACCTGCCTCTGCCGCCTGATGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGGACTCGAACACAGAAATCCACCTGCCTCTGCCGCCTGATGTTT  450

seq1  TGTTCTTTTAAAATTATATCTTTTTTTACATAAAATGTTTTAAAAATTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTTTAAAATTATATCTTTTTTTACATAAAATGTTTTAAAAATTCA  500

seq1  ACTATATTTTGAGCATATTCTTCCCCTCCTCCAAGTTCTTCCAGAACCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATATTTTGAGCATATTCTTCCCCTCCTCCAAGTTCTTCCAGAACCTC  550

seq1  TTCTTCTCCCTACCTACCCAACTCATGTTATTTTTCAAAAGCTCAGTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTCCCTACCTACCCAACTCATGTTATTTTTCAAAAGCTCAGTTCA  600

seq1  ACAGCAAATCCTCCCAACCT-AAAATATTCTCCCCCAAAACAAACCAACA  649
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ACAGCAAATCCTCCCAACCTAAAAATATTCTCCCCCAAAACAAACCAACA  650

seq1  AAAGTCCCACCAAATGATAAAGAGCCCAAGAGAAGTCATGAAAATCAAAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCCCACCAAATGATAAAGAGCCCAAGAGAAGTCATGAAAATCAAAC  700

seq1  ACAATTCACACACTCAGAGTCCCATAAAAACACTAACCTAGAAGTGCTCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTCACACACTCAGAGTCCCATAAAAACACTAACCTAGAAGTGCTCA  750

seq1  GGTACTTAACTAGAGCAATGAGGCAGGAGAAGAAATAAAAAAATACAAAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTTAACTAGAGCAATGAGGCAGGAGAAGAAATAAAAAAATACAAAT  800

seq1  AATT-AAGGAAGAGTTTACACCTTTAGATGATATT-ATTCT-ATACTGCA  846
      |||| ||||||||| ||||||| |||||||||||| ||||| ||||||||
seq2  AATTAAAGGAAGAG-TTACACC-TTAGATGATATTAATTCTAATACTGCA  848

seq1  ACC-CCCCCAA----CCCCCCCCCCCCCGAGGGCTCAGCACAAATCTCAT  891
      ||| |||||||    |||||||||||||||||   |||||| ||||||||
seq2  ACCTCCCCCAACCCTCCCCCCCCCCCCCGAGGCTCCAGCAC-AATCTCAT  897

seq1  ATCTG-ATGAGCCCTTTCAGCATAG-CATTCAAGAACCAACATATAGGAA  939
      ||||| ||||||| ||||| ||||| ||||| || | | |||||||||||
seq2  ATCTGAATGAGCCTTTTCAACATAGCCATTCCAGGATC-ACATATAGGAA  946

seq1  G  940
      |
seq2  G  947