BAC Information

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BAC

Clone NameB6Ng01-304H12
Chromosome13 (Build37)
Map Location 35,864,100 - 36,015,619
singlet/doubletdoublet
Overlap geneCdyl, Rpp40
Upstream geneEG432746, LOC666677, Prpf4b, 4933417A18Rik, LOC666697, 1810022C23Rik, Peci
Downstream geneLOC100041568, Ppp1r3g, Lyrm4, LOC100042773, Fars2, LOC100041590, LOC666758, Nrn1, F13a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-304H12.bB6Ng01-304H12.g
ACCGA098018GA098019
length987932
definitionB6Ng01-304H12.b B6Ng01-304H12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,014,638 - 36,015,619)(35,864,100 - 35,865,031)
sequence
gaattcagtttgaaaatattttattgagaatttctgtatctatgttcatc
agggagattattttaaaacttttttgttgtttctttatctgattttgata
ggtggtaataatagcttcataaaaagagtttgcactgtttcttgtctctc
tcttttatggagtagattgaaaagcatcttagcctctttttcactttctg
gaaatgaagcaaattggtttgctttaccactaatttctgccatgatgttc
tgtctcaccacaagcttagtataatagtcccatgatcatgaactggaaac
tctgtcagtcataattaacttcttctatctataaacacattgtatcaggc
attttttatagtgacagaaagcttactcaagagactgcattaggtgtaga
tgaaaaaaaaaaggtaaataattgccagttgtttagctgggtgtggtggt
gcacgcctttaatcccagcacttgggaagcagaggcaggcggatttctga
tttcgaggccagcttggtctacaaagtgagttccaggacagccagggcta
tacagagaaaccatgtctcacaaaacaaaacaaaacaaaacaaaacaaaa
caaaacaaaacattacaaaacaaaatgctagttattgaagttgagtgaga
tgccaatgatattgctttcctttccatgtatgtctaaatttttatgtaag
aaagtacaaagttaatgtgctttttgcagaagatttggccaaattatgaa
ctccaagactgtgaattgtaaaaatttgtttcttgctgtggtgtggctca
gccctagcacacacctttaacccaagagctttctgtaaacaagagcttaa
tatagtcaaggttaggtcaataggcaaattgaacaaccagttgacaggga
gttaaacataagaaaacttcaggaaagagaaaggagggttcttttgagtt
aaagggtatttaagacagcatgggagaagggaggagg
gaattctccaggggccataagccttaggccaccgcagccagtctgcctgc
aagagtcccttgtacagtcccttttacagtctcacctacaggtgggtgtc
agtacgcagacagccctagaggtgctgtgctgatgctggctccgtccact
gtgctgatgctggggtactttgtcccctcttcagcctgcacgggtccaat
gcagtgtgccttagcttttgctagactttccctgcccctggagcactcgg
tagcttgtagctgtgggttactacgttgggcctgcatctgaggagtactt
ctgttagggaaagcagggagataaaagttgccttcgcgctcacccatcct
ctgcctcctggaggtggacaggctggatcctgctttgaaggttggaatga
tctgccatataacgaagactgagaagtaggtctgtttcatgtccattccc
tatttgccctttgacctggggcctttcctacctgaagggactttgatctg
acctcccatctcaacacccagtcctgtgtcccagctctacatcacaggca
ctagtggcttttggggggaatgcttccttgatttttcaaaacctttccat
aagtattcctgaaaatacccctccttgccagctgagaatgatggcttgtt
ttgcagtatttgaaaagcttgcttgcttgcttgctttctttctttctttt
ttcttccttcctttcttccttccttccctccttctccttctcctccttct
ccttctcttcttttttgttttgtgttttttttgagggtgtatgtatcctg
gctgtctaggaattcacaatgaaccaggctggccttaaacatccacctgc
ctatgcctcctgagtgctgggattaaaggtgcgcctctgtcaccgccacc
accacccagcttaagaggctagcctggctccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_36014638_36015619
seq2: B6Ng01-304H12.b_43_1029 (reverse)

seq1  CCTCCTCTCCTTCT-CCATGCTGTCTTAAATACCCTTTAACTCAAA--GA  47
      ||||||| |||||| |||||||||||||||||||||||||||||||   |
seq2  CCTCCTC-CCTTCTCCCATGCTGTCTTAAATACCCTTTAACTCAAAAGAA  49

seq1  CCCTCC-TTCTCTTTCCTG-AGTTTTCTTATGTTT-ACTCCCTGTCAACT  94
      |||||| |||||||||||| ||||||||||||||| ||||||||||||||
seq2  CCCTCCTTTCTCTTTCCTGAAGTTTTCTTATGTTTAACTCCCTGTCAACT  99

seq1  GGTTGTTCAATTTGCCTATTGACCTAACCTTGACTATATTAAGCTCTTGT  144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTTCAATTTGCCTATTGACCTAACCTTGACTATATTAAGCTCTTGT  149

seq1  TTACAGAAAGCTCTTGGGTTAAAGGTGTGTGCTAGGGCTGAGCCACACCA  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGAAAGCTCTTGGGTTAAAGGTGTGTGCTAGGGCTGAGCCACACCA  199

seq1  CAGCAAGAAACAAATTTTTACAATTCACAGTCTTGGAGTTCATAATTTGG  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAGAAACAAATTTTTACAATTCACAGTCTTGGAGTTCATAATTTGG  249

seq1  CCAAATCTTCTGCAAAAAGCACATTAACTTTGTACTTTCTTACATAAAAA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATCTTCTGCAAAAAGCACATTAACTTTGTACTTTCTTACATAAAAA  299

seq1  TTTAGACATACATGGAAAGGAAAGCAATATCATTGGCATCTCACTCAACT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGACATACATGGAAAGGAAAGCAATATCATTGGCATCTCACTCAACT  349

seq1  TCAATAACTAGCATTTTGTTTTGTAATGTTTTGTTTTGTTTTGTTTTGTT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATAACTAGCATTTTGTTTTGTAATGTTTTGTTTTGTTTTGTTTTGTT  399

seq1  TTGTTTTGTTTTGTTTTGTGAGACATGGTTTCTCTGTATAGCCCTGGCTG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGTTTTGTTTTGTGAGACATGGTTTCTCTGTATAGCCCTGGCTG  449

seq1  TCCTGGAACTCACTTTGTAGACCAAGCTGGCCTCGAAATCAGAAATCCGC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGAACTCACTTTGTAGACCAAGCTGGCCTCGAAATCAGAAATCCGC  499

seq1  CTGCCTCTGCTTCCCAAGTGCTGGGATTAAAGGCGTGCACCACCACACCC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCTGCTTCCCAAGTGCTGGGATTAAAGGCGTGCACCACCACACCC  549

seq1  AGCTAAACAACTGGCAATTATTTACCTTTTTTTTTTCATCTACACCTAAT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAAACAACTGGCAATTATTTACCTTTTTTTTTTCATCTACACCTAAT  599

seq1  GCAGTCTCTTGAGTAAGCTTTCTGTCACTATAAAAAATGCCTGATACAAT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCTCTTGAGTAAGCTTTCTGTCACTATAAAAAATGCCTGATACAAT  649

seq1  GTGTTTATAGATAGAAGAAGTTAATTATGACTGACAGAGTTTCCAGTTCA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTATAGATAGAAGAAGTTAATTATGACTGACAGAGTTTCCAGTTCA  699

seq1  TGATCATGGGACTATTATACTAAGCTTGTGGTGAGACAGAACATCATGGC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCATGGGACTATTATACTAAGCTTGTGGTGAGACAGAACATCATGGC  749

seq1  AGAAATTAGTGGTAAAGCAAACCAATTTGCTTCATTTCCAGAAAGTGAAA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTAGTGGTAAAGCAAACCAATTTGCTTCATTTCCAGAAAGTGAAA  799

seq1  AAGAGGCTAAGATGCTTTTCAATCTACTCCATAAAAGAGAGAGACAAGAA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGCTAAGATGCTTTTCAATCTACTCCATAAAAGAGAGAGACAAGAA  849

seq1  ACAGTGCAAACTCTTTTTATGAAGCTATTATTACCACCTATCAAAATCAG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGCAAACTCTTTTTATGAAGCTATTATTACCACCTATCAAAATCAG  899

seq1  ATAAAGAAACAACAAAAAAGTTTTAAAATAATCTCCCTGATGAACATAGA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGAAACAACAAAAAAGTTTTAAAATAATCTCCCTGATGAACATAGA  949

seq1  TACAGAAATTCTCAATAAAATATTTTCAAACTGAATTC  982
      ||||||||||||||||||||||||||||||||||||||
seq2  TACAGAAATTCTCAATAAAATATTTTCAAACTGAATTC  987

seq1: chr13_35864100_35865031
seq2: B6Ng01-304H12.g_68_999

seq1  GAATTCTCCAGGGGCCCATAAGCCTTAGGCCACCGCAGCCAGTCTGCCTG  50
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCAGGGG-CCATAAGCCTTAGGCCACCGCAGCCAGTCTGCCTG  49

seq1  CAAGAGTCCCTTGTACAGTCCCTTTTACAGTCTCACCTACAGGTGGGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGTCCCTTGTACAGTCCCTTTTACAGTCTCACCTACAGGTGGGTGT  99

seq1  CAGTACGCAGACAGCCCTAGAGGTGCTGTGCTGATGCTGGCTCCGTCCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACGCAGACAGCCCTAGAGGTGCTGTGCTGATGCTGGCTCCGTCCAC  149

seq1  TGTGCTGATGCTGGGGTACTTTGTCCCCTCTTCAGCCTGCACGGGTCCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTGATGCTGGGGTACTTTGTCCCCTCTTCAGCCTGCACGGGTCCAA  199

seq1  TGCAGTGTGCCTTAGCTTTTGCTAGACTTTCCCTGCCCCTGGAGCACTCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTGTGCCTTAGCTTTTGCTAGACTTTCCCTGCCCCTGGAGCACTCG  249

seq1  GTAGCTTGTAGCTGTGGGTTACTACGTTGGGCCTGCATCTGAGGAGTACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTTGTAGCTGTGGGTTACTACGTTGGGCCTGCATCTGAGGAGTACT  299

seq1  TCTGTTAGGGAAAGCAGGGAGATAAAAGTTGCCTTCGCGCTCACCCATCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTAGGGAAAGCAGGGAGATAAAAGTTGCCTTCGCGCTCACCCATCC  349

seq1  TCTGCCTCCTGGAGGTGGACAGGCTGGATCCTGCTTTGAAGGTTGGAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCTGGAGGTGGACAGGCTGGATCCTGCTTTGAAGGTTGGAATG  399

seq1  ATCTGCCATATAACGAAGACTGAGAAGTAGGTCTGTTTCATGTCCATTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCCATATAACGAAGACTGAGAAGTAGGTCTGTTTCATGTCCATTCC  449

seq1  CTATTTGCCCTTTGACCTGGGGCCTTTCCTACCTGAAGGGACTTTGATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTGCCCTTTGACCTGGGGCCTTTCCTACCTGAAGGGACTTTGATCT  499

seq1  GACCTCCCATCTCAACACCCAGTCCTGTGTCCCAGCTCTACATCACAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCCCATCTCAACACCCAGTCCTGTGTCCCAGCTCTACATCACAGGC  549

seq1  ACTAGTGGCTTTTGGGGGGAATGCTTCCTTGATTTTTCAAAACCTTTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTGGCTTTTGGGGGGAATGCTTCCTTGATTTTTCAAAACCTTTCCA  599

seq1  TAAGTATTCCTGAAAATACCCCTCCTTGCCAGCTGAGAATGATGGCTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTATTCCTGAAAATACCCCTCCTTGCCAGCTGAGAATGATGGCTTGT  649

seq1  TTTGCAGTATTTGAAAAGCTTGCTTGCTTGCTTGCTTTCTTTCTTTCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAGTATTTGAAAAGCTTGCTTGCTTGCTTGCTTTCTTTCTTTCTTT  699

seq1  TTTCTTCCTTCCTTTCTTCCTTCCTTCCCTCCTTCTCCTTCTCCTCCTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCCTTCCTTTCTTCCTTCCTTCCCTCCTTCTCCTTCTCCTCCTTC  749

seq1  TCCTTCTCTTCTTTTTTGTTTTGTGTTTTTTTTGAGGGTGTATGTATCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTCTTCTTTTTTGTTTTGTGTTTTTTTTGAGGGTGTATGTATCCT  799

seq1  GGCTGTCTAGGAATTCACAATGAACCAGGCTGGCCTTAAACATCCACCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTCTAGGAATTCACAATGAACCAGGCTGGCCTTAAACATCCACCTG  849

seq1  CCTATGCCTCCTGAGTGCTGGGATTAAAGGTGCGCCTCTGTCACCGCCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGCCTCCTGAGTGCTGGGATTAAAGGTGCGCCTCTGTCACCGCCAC  899

seq1  CACCACCCAGCTTAAGAGGCTAG-CTGGCTCCC  932
      ||||||||||||||||||||||| |||||||||
seq2  CACCACCCAGCTTAAGAGGCTAGCCTGGCTCCC  932