BAC Information

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BAC

Clone NameB6Ng01-304H14
Chromosome13 (Build37)
Map Location 72,961,055 - 73,106,284
singlet/doubletdoublet
Overlap genenone
Upstream geneIrx1, LOC100042828, LOC100042832, LOC100042836, Irx2
Downstream geneLOC621486, Irx4, LOC100042864, Ndufs6, Mrpl36, Aytl2, Slc6a3, Clptm1l, Tert, Slc6a18, Slc6a19, Slc12a7, Nkd2, EG666360, Trip13, Brd9, Zdhhc11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-304H14.bB6Ng01-304H14.g
ACCGA098022GA098023
length1,1871,057
definitionB6Ng01-304H14.b B6Ng01-304H14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,961,055 - 72,962,240)(73,105,076 - 73,106,284)
sequence
gaattcctttctaagacacaccacagccttcctacgtggatggcatcaca
gggtaccacctttgccctgatttgggagtgctttgaatcatgggagcaag
aaaagcacagaaatgtggttaccatatcatttaagaacctgtgaataccc
taccccataaaccttccctttctcctagctagccatgtgcactgttggct
ttcctctgcacagagctgtggttggcacccaccatcatccctgaagccct
caataatccctcaccctctgacaataggccaggctcccattgctcttcat
gtgtcaaggagtaaaagaaaatggaattacatccagcatggtgttgctgt
ttcctaccactgtgcctctagacaggcagctattccttcaactccctatt
cattcattcattcattcattcatctatccctttaccacatttgttcattc
ttagtctatcaaatctgtctattcatacattcatctatctctttaccaca
cttattcattcatcattccatcaaacctgtccattcatccattcatcttc
cccttaaccaattcattcattcattcattcattcattcatcatccctcta
ttaattctgtccattcatcctttcatctatccctttaccacattctttca
ttaattgtctgtccattcattcttccactggactaattcttctttccatg
gatccatccacctattatttcatccatctccatatctagcaatctgctac
ccatccatccatccatccatccatctatccatccatctacaatctcttta
ttctttcatctattcagcaccccctttcctttctcctttcctccattaat
ccctctatctagccactcatattgccatccagcatcgcaggtctcattct
aacctgtaataatttgtcatcccaagagcttgctgagcagaggatctgtg
ctgtttgttttgggaggtcagtggtagagtcaactgaaagaacaaagaca
actggcttgttctcaagaagcttttgtttgctcacttgctctttctctgt
gactttctttctacataatctacacacttatcaagaggaaaagctgagtg
acattccagaaatgtggctctgttgtaaggtctgcagcatcctagtaatt
ctaggagaactgtagaaagactctcaggctctctagg
gaattcccatacaaagtcagaagcttagacaccaatgtgtattgttttat
tttgtgatttagtaataaattatccagataattccccctttctcttaatt
tctttgtgtgtgtgtgttcaatgtttgagttcacattaagtgtgaaaaat
caaaataagaagggaacctgagcacaactcttcacagtggaatgttctcc
aagatcacctggggccagtgggtaggtaggcctgtgtgactcttccctag
actgatatcagtctccatgtaactgaatagctgcctctaaccctactcat
ctatgtatacttcagaatcccctttaagtagacatttcagtgctggcttt
ctggcttggtaaaggatgaagtattgcttgagggaagaagggcatgtgga
atgctaagccacacaggaaatatctggagttttgaacacagatttcaaat
atgagcaccaaaggctctccagcacccatgcttgctcccacaggctccag
atcttgagaaataggcagggtccccacagttcacagaccttgcagtctct
gtagcacaatacaggctgccatgggctccagacactgtaaagaggctctt
caacacccaatgagccctccctcactatgggctccagaccctgtaatgag
gttatccaccacctaggcaggttcccatggccttcagacctggcaaagag
gttctacagtaccaggcaaggattccatgtgtttcggacccctaaaatat
gttatgtagcacataggcagcttccgatgggctccagatcttacaagggg
gttctcaggcacaaggcaggatccatgggctccagactttgtaaggaggt
tctccagcaccactcagacttccatgagcttaagatcttgcaatggggtt
ctgcagtaccagaaggatttcatgaattccagaccttccaaggaggattc
tctagcaccaggcatgctcccatgggactctacaccttttcaaggggaat
tgtccaccacaggtagtctcccacagctcagatcttaacaggcatctctc
tgcacca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_72961055_72962240
seq2: B6Ng01-304H14.b_47_1233

seq1  GAATTCCTTTCTAAGACACACCACAGCCTTCCTACGTGGATGGCATCACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTCTAAGACACACCACAGCCTTCCTACGTGGATGGCATCACA  50

seq1  GGGTACCACCTTTGCCCTGATTTGGGAGTGCTTTGAATCATGGGAGCAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTACCACCTTTGCCCTGATTTGGGAGTGCTTTGAATCATGGGAGCAAG  100

seq1  AAAAGCACAGAAATGTGGTTACCATATCATTTAAGAACCTGTGAATACCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCACAGAAATGTGGTTACCATATCATTTAAGAACCTGTGAATACCC  150

seq1  TACCCCATAAACCTTCCCTTTCTCCTAGCTAGCCATGTGCACTGTTGGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCCATAAACCTTCCCTTTCTCCTAGCTAGCCATGTGCACTGTTGGCT  200

seq1  TTCCTCTGCACAGAGCTGTGGTTGGCACCCACCATCATCCCTGAAGCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTGCACAGAGCTGTGGTTGGCACCCACCATCATCCCTGAAGCCCT  250

seq1  CAATAATCCCTCACCCTCTGACAATAGGCCAGGCTCCCATTGCTCTTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAATCCCTCACCCTCTGACAATAGGCCAGGCTCCCATTGCTCTTCAT  300

seq1  GTGTCAAGGAGTAAAAGAAAATGGAATTACATCCAGCATGGTGTTGCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCAAGGAGTAAAAGAAAATGGAATTACATCCAGCATGGTGTTGCTGT  350

seq1  TTCCTACCACTGTGCCTCTAGACAGGCAGCTATTCCTTCAACTCCCTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTACCACTGTGCCTCTAGACAGGCAGCTATTCCTTCAACTCCCTATT  400

seq1  CATTCATTCATTCATTCATTCATCTATCCCTTTACCACATTTGTTCATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATTCATTCATTCATTCATCTATCCCTTTACCACATTTGTTCATTC  450

seq1  TTAGTCTATCAAATCTGTCTATTCATACATTCATCTATCTCTTTACCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCTATCAAATCTGTCTATTCATACATTCATCTATCTCTTTACCACA  500

seq1  CTTATTCATTCATCATTCCATCAAACCTGTCCATTCATCCATTCATCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTCATTCATCATTCCATCAAACCTGTCCATTCATCCATTCATCTTC  550

seq1  CCCTTAACCAATTCATTCATTCATTCATTCATTCATTCATCATCCCTCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTAACCAATTCATTCATTCATTCATTCATTCATTCATCATCCCTCTA  600

seq1  TTAATTCTGTCCATTCATCCTTTCATCTATCCCTTTACCACATTCTTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTCTGTCCATTCATCCTTTCATCTATCCCTTTACCACATTCTTTCA  650

seq1  TTAATTGTCTGTCCATTCATTCTTCCACTGGACTAATTCTTCTTTCCATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTGTCTGTCCATTCATTCTTCCACTGGACTAATTCTTCTTTCCATG  700

seq1  GATCCATCCACCTATTATTTCATCCATCTCCATATCTAGCAATCTGCTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCATCCACCTATTATTTCATCCATCTCCATATCTAGCAATCTGCTAC  750

seq1  CCATCCATCCATCCATCCATCCATCTATCCATCCATCTACAATCTCTTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCATCCATCCATCCATCCATCTATCCATCCATCTACAATCTCTTTA  800

seq1  TTCTTTCATCTATTCAGCACCCCCTTTCCTTTCTCCTTTCCTCCATTAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCATCTATTCAGCACCCCCTTTCCTTTCTCCTTTCCTCCATTAAT  850

seq1  CCCTCTATCTAGCCACTCATATTGCCATCCAGCATCGCAGGTCTCATTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTATCTAGCCACTCATATTGCCATCCAGCATCGCAGGTCTCATTCT  900

seq1  AACCTGTAATAATTTGTCATCCCAAGAGCTTGCTGAGCAGAGGATCTGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGTAATAATTTGTCATCCCAAGAGCTTGCTGAGCAGAGGATCTGTG  950

seq1  CTGTTTGTTTT-GGAGGTCAGTGGTAGAGTCAACTGAAAAGAACAAAGAC  999
      ||||||||||| |||||||||||||||||||||||| |||||||||||||
seq2  CTGTTTGTTTTGGGAGGTCAGTGGTAGAGTCAACTG-AAAGAACAAAGAC  999

seq1  AACTGGCTTGTTCTCAAGAAGCTTTTGTTTGCTCACTTGCTCTTTCCTCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AACTGGCTTGTTCTCAAGAAGCTTTTGTTTGCTCACTTGCTCTTT-CTCT  1048

seq1  GTTGACTTTCTTTCTACATATCCTACACACTATTCAAGAAGAAAGGCTGA  1099
      | ||||||||||||||||||  |||||||||  |||||| |||| |||||
seq2  G-TGACTTTCTTTCTACATAATCTACACACTTATCAAGAGGAAAAGCTGA  1097

seq1  GTGACATCCCAGAAATGTTGGCTCTGTGGAAGTGTCTGCAGCATTCCCCA  1149
      ||||||| ||||||||| ||||||||| | |  |||||||||||  || |
seq2  GTGACATTCCAGAAATG-TGGCTCTGTTGTAAGGTCTGCAGCAT--CCTA  1144

seq1  GTAAATTCTAGGAG-ACAGTAG-AAGACT-TCAG----TCTAGG  1186
      || ||||||||||| || |||| |||||| ||||    ||||||
seq2  GT-AATTCTAGGAGAACTGTAGAAAGACTCTCAGGCTCTCTAGG  1187

seq1: chr13_73105076_73106284
seq2: B6Ng01-304H14.g_68_1124 (reverse)

seq1  TGGTGCTGAAGAGATGCCTTCCAAGGTCTGGAGTCGTAAGATCCCCACCT  50
                                                        
seq2  --------------------------------------------------  0

seq1  AGTGCTGGAAAACATTCTTGTAAGACCTGAAGCCTGTGGGCATCCTGCCT  100
                                                        
seq2  --------------------------------------------------  0

seq1  GGTTCTGGAGAACCTCCTTCCAAGGTCTGAAGCCTGTAGGAGCCTGCCTG  150
                                                      ||
seq2  ------------------------------------------------TG  2

seq1  GTGCAGGAGAGATTGCTTGTAAGGTCTGGAGCCTGTGGGAGACTACCTGG  200
      ||||| |||||||  ||  |||| ||| ||| |||||||||||||||| |
seq2  GTGCA-GAGAGATGCCTGTTAAGATCT-GAG-CTGTGGGAGACTACCT-G  48

seq1  TGGTGGACAA-TCCCCTTG-AAAGGTGTAGAGT-CCATGGGAGCATGCCT  247
      |||||||||| |||||||| ||||||||||||| ||||||||||||||||
seq2  TGGTGGACAATTCCCCTTGAAAAGGTGTAGAGTCCCATGGGAGCATGCCT  98

seq1  GGTGCTAGAGAATCCTCCTTGGAAGGTCTGGAATTCATGGAATCCTTTCT  297
      ||||||||||||||||||||||||||||||||||||||| ||||| ||||
seq2  GGTGCTAGAGAATCCTCCTTGGAAGGTCTGGAATTCATGAAATCC-TTCT  147

seq1  GGTACTGCAGAACCCCATTTGCAAGATCTTAAGCTCATGGAAGTCTGAGT  347
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GGTACTGCAGAACCCCA-TTGCAAGATCTTAAGCTCATGGAAGTCTGAGT  196

seq1  GGTGCTGGAGAACCTCCTTACAAAGTCTGGAGCCCATGGATCCCTGCCTT  397
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GGTGCTGGAGAACCTCCTTACAAAGTCTGGAGCCCATGGAT-CCTGCCTT  245

seq1  GTGCCTGAGAACCCCCTTGTAAGATCTGGAGCCCATCGGAAGCTGCCTAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTGAGAACCCCCTTGTAAGATCTGGAGCCCATCGGAAGCTGCCTAT  295

seq1  GTGCTACATAACATATTTTAGGGGTCCGAAACACATGGAATCCTTGCCTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTACATAACATATTTTAGGGGTCCGAAACACATGGAATCCTTGCCTG  345

seq1  GTACTGTAGAACCTCTTTGCCAGGTCTGAAGGCCATGGGAACCTGCCTAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGTAGAACCTCTTTGCCAGGTCTGAAGGCCATGGGAACCTGCCTAG  395

seq1  GTGGTGGATAACCTCATTACAGGGTCTGGAGCCCATAGTGAGGGAGGGCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGGATAACCTCATTACAGGGTCTGGAGCCCATAGTGAGGGAGGGCT  445

seq1  CATTGGGTGTTGAAGAGCCTCTTTACAGTGTCTGGAGCCCATGGCAGCCT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGGTGTTGAAGAGCCTCTTTACAGTGTCTGGAGCCCATGGCAGCCT  495

seq1  GTATTGTGCTACAGAGACTGCAAGGTCTGTGAACTGTGGGGACCCTGCCT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGTGCTACAGAGACTGCAAGGTCTGTGAACTGTGGGGACCCTGCCT  545

seq1  ATTTCTCAAGATCTGGAGCCTGTGGGAGCAAGCATGGGTGCTGGAGAGCC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCAAGATCTGGAGCCTGTGGGAGCAAGCATGGGTGCTGGAGAGCC  595

seq1  TTTGGTGCTCATATTTGAAATCTGTGTTCAAAACTCCAGATATTTCCTGT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTGCTCATATTTGAAATCTGTGTTCAAAACTCCAGATATTTCCTGT  645

seq1  GTGGCTTAGCATTCCACATGCCCTTCTTCCCTCAAGCAATACTTCATCCT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTTAGCATTCCACATGCCCTTCTTCCCTCAAGCAATACTTCATCCT  695

seq1  TTACCAAGCCAGAAAGCCAGCACTGAAATGTCTACTTAAAGGGGATTCTG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCAAGCCAGAAAGCCAGCACTGAAATGTCTACTTAAAGGGGATTCTG  745

seq1  AAGTATACATAGATGAGTAGGGTTAGAGGCAGCTATTCAGTTACATGGAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATACATAGATGAGTAGGGTTAGAGGCAGCTATTCAGTTACATGGAG  795

seq1  ACTGATATCAGTCTAGGGAAGAGTCACACAGGCCTACCTACCCACTGGCC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATATCAGTCTAGGGAAGAGTCACACAGGCCTACCTACCCACTGGCC  845

seq1  CCAGGTGATCTTGGAGAACATTCCACTGTGAAGAGTTGTGCTCAGGTTCC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTGATCTTGGAGAACATTCCACTGTGAAGAGTTGTGCTCAGGTTCC  895

seq1  CTTCTTATTTTGATTTTTCACACTTAATGTGAACTCAAACATTGAACACA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTATTTTGATTTTTCACACTTAATGTGAACTCAAACATTGAACACA  945

seq1  CACACACAAAGAAATTAAGAGAAAGGGGGAATTATCTGGATAATTTATTA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACAAAGAAATTAAGAGAAAGGGGGAATTATCTGGATAATTTATTA  995

seq1  CTAAATCACAAAATAAAACAATACACATTGGTGTCTAAGCCTCTGACTTT  1197
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CTAAATCACAAAATAAAACAATACACATTGGTGTCTAAGCTTCTGACTTT  1045

seq1  GTATGGGAATTC  1209
      ||||||||||||
seq2  GTATGGGAATTC  1057