BAC Information

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BAC

Clone NameB6Ng01-304P13
Chromosome13 (Build37)
Map Location 5,542,312 - 5,675,198
singlet/doubletdoublet
Overlap genenone
Upstream geneAkr1c21, Akr1e1, EG432721, EG432723
Downstream gene1700016G22Rik, Klf6, LOC100039388, LOC100039395, Pitrm1, Pfkp, LOC100039532
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-304P13.bB6Ng01-304P13.g
ACCGA098382GA098383
length1,1481,172
definitionB6Ng01-304P13.b B6Ng01-304P13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,674,053 - 5,675,198)(5,542,312 - 5,543,491)
sequence
gaattcaatcagcttgacaatgaggccttgcccctgtagaggaatcccat
tcagaaggagctgagacctatcctatttccatggcaacattctgctctct
acgtaatgggctctgaattggataatgcaccacatcatagagcttcataa
ttcacactttctggttgctcagctcctgtagagcaacctgattcctgtta
gctgcattttataagagatcaattaagtcacaaaggaaggggtagaacta
atgtttcaccaaaacctacagcatggtggctactaatgaatttttctcct
tttttttttcccgagttggtgacaaagctaattttttaatccaaaatttc
tctgggaaccacaattgatttttgtgttgaataaaattcagaaactctct
aaaaacacacaagtcctggagattgattatcatctgctgtgacagggtgg
aaagatagccacctctgtaaaattgtctgagtttcaaatcctcacaaaga
catcagtttccagtgaaagttgagcccactcacccctttgtctgatggta
taataacattgatatggagaaaaaaagcatctgctcattgatgtatttat
atagagaagattggccagcaagcttctggcacagaataggtctcataggg
gaagttcttgggaagattctgaaatgtacattttctgcagatttaggtac
ttaccatttaaatttgaatataaattcaaaaagatattttatttttaatg
aacttgaattgatttgtttttgtattcccttatatatttttcataaaata
gtcttatggaaaggattttgaatttcataataaatttactcaatggtgaa
aaaaaaaaaaagaataaaacaggtaatgtgttaggtgtcagtcatggtta
gaggttgggctgatacaaataaaggtgcagaggaagctagaactagcctc
cccagcctatctggaccattgcttgcttgctaggatcaattatcctaatt
tcattggggaagcccatgaactgggtgaggtgcctcattcagatgaaagc
agtacatcagagagggaacttctgcttattcagccttgagcagactgtta
ttcttggaagaatcaagtgtttcattatgagacaatagcctgacgcac

gaattcccacctcttccatcaaaccattagccactagtatctttagtgat
tgatcaaaaaaccaactgggaacaggacctccaaagttcatgtgcagact
cccaatcaaaacatcagaaccactccctacagagatttgctcaccattta
actgaaaaagaagatgtgatctgttcactactcaggtgtacaaggagata
gaatctgcttaatattcaactataaaagagatggtatctgctcactattc
aactgtataaagaatatatttaaatatataaaaatgcttctaatgctatt
tttctaaagctttttataccaatctttaaattttttcatcattaaattaa
tatagagaatgtttggtaagaatggaggaaatcttcataacttaacataa
ctgatgtatcatttcttacagatcttgtgccttgccttccatacatcact
ttcacaaagtatacctaatcatttgaaaacaaatttcaagcatgattttt
cacttaacatgactttggttagagacatgcctcttttactgacatacaat
aaagacacatatagctatgtttacaagaatgaggtagatattaaaacatc
aggcaccagagttcatacactacggcaataatcaaagctactcattccat
gatgctgttaaggtactagaatattgttacctttgcttctctcttttagt
tttattctcctgtttatttccttccttattatatttataaatatgttatt
actttgaaaaaatacttaacataaagaaactttgaaaaagaacattgtat
tatggctcacagtttgagagaatacagtctatcatgaaggagaaaggcat
ggcagcaggcagttcagtttcactgagagtatctggaagttgcttattac
atgttatcaacctagaaacagagatactagttggagggacagagagacta
taagccataagatgctgtgggtttgtaaaacccgcctttgccagaatatt
cttcaatgtccaacagttacaataacatcccaaaggtcccctgcaccaat
gctcagggaacatttcacataagtcacagcagtaatatgttacaattgtc
tggcctccaaagaacataggcctttataggtacagttcttgttagaacct
aaatgttatggtgttctctaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_5674053_5675198
seq2: B6Ng01-304P13.b_49_1196 (reverse)

seq1  GTGCTGTCAGGCTA-TGTCTCATTATGGAAACACTTTGATCTTCCAGGAA  49
      |||| ||||||||| |||||||| || |||||||||   ||||||| |||
seq2  GTGC-GTCAGGCTATTGTCTCATAAT-GAAACACTTGATTCTTCCAAGAA  48

seq1  T-ACAGTCTGCTCAAGGCTGA--TAGCAGAAG-TCCCTCTCTGATGTAAC  95
      | |||||||||||||||||||   |||||||| |||||||||||||| ||
seq2  TAACAGTCTGCTCAAGGCTGAATAAGCAGAAGTTCCCTCTCTGATGT-AC  97

seq1  TGCTTTCATCTGAATGAGGCACCTCACCCAAGGTTCATGGGCTTCCCCAA  145
      ||||||||||||||||||||||||||||||  ||||||||||||||||||
seq2  TGCTTTCATCTGAATGAGGCACCTCACCCA--GTTCATGGGCTTCCCCAA  145

seq1  TGAAATTA-GATAATTGATCCTAGCAAGCAAGCAATGGTCCAGATAGGCT  194
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATTAGGATAATTGATCCTAGCAAGCAAGCAATGGTCCAGATAGGCT  195

seq1  -GGGAGGCTAGTTCTAGCTTCCTCTGCACCTTTATTTTGTATCAGCCCAA  243
       ||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GGGGAGGCTAGTTCTAGCTTCCTCTGCACCTTTA-TTTGTATCAGCCCAA  244

seq1  CCTCTAACCATGACTGACACCTAACACATTACCTGTTTTATTCTTTTTTT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTAACCATGACTGACACCTAACACATTACCTGTTTTATTCTTTTTTT  294

seq1  TTTTTTCACCATTGAGTAAATTTATTATGAAATTCAAAATCCTTTCCATA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCACCATTGAGTAAATTTATTATGAAATTCAAAATCCTTTCCATA  344

seq1  AGACTATTTTATGAAAAATATATAAGGGAATACAAAAACAAATCAATTCA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTATTTTATGAAAAATATATAAGGGAATACAAAAACAAATCAATTCA  394

seq1  AGTTCATTAAAAATAAAATATCTTTTTGAATTTATATTCAAATTTAAATG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCATTAAAAATAAAATATCTTTTTGAATTTATATTCAAATTTAAATG  444

seq1  GTAAGTACCTAAATCTGCAGAAAATGTACATTTCAGAATCTTCCCAAGAA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTACCTAAATCTGCAGAAAATGTACATTTCAGAATCTTCCCAAGAA  494

seq1  CTTCCCCTATGAGACCTATTCTGTGCCAGAAGCTTGCTGGCCAATCTTCT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCCTATGAGACCTATTCTGTGCCAGAAGCTTGCTGGCCAATCTTCT  544

seq1  CTATATAAATACATCAATGAGCAGATGCTTTTTTTCTCCATATCAATGTT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATAAATACATCAATGAGCAGATGCTTTTTTTCTCCATATCAATGTT  594

seq1  ATTATACCATCAGACAAAGGGGTGAGTGGGCTCAACTTTCACTGGAAACT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATACCATCAGACAAAGGGGTGAGTGGGCTCAACTTTCACTGGAAACT  644

seq1  GATGTCTTTGTGAGGATTTGAAACTCAGACAATTTTACAGAGGTGGCTAT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCTTTGTGAGGATTTGAAACTCAGACAATTTTACAGAGGTGGCTAT  694

seq1  CTTTCCACCCTGTCACAGCAGATGATAATCAATCTCCAGGACTTGTGTGT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCACCCTGTCACAGCAGATGATAATCAATCTCCAGGACTTGTGTGT  744

seq1  TTTTAGAGAGTTTCTGAATTTTATTCAACACAAAAATCAATTGTGGTTCC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGAGAGTTTCTGAATTTTATTCAACACAAAAATCAATTGTGGTTCC  794

seq1  CAGAGAAATTTTGGATTAAAAAATTAGCTTTGTCACCAACTCGGGAAAAA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAATTTTGGATTAAAAAATTAGCTTTGTCACCAACTCGGGAAAAA  844

seq1  AAAAAGGAGAAAAATTCATTAGTAGCCACCATGCTGTAGGTTTTGGTGAA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGGAGAAAAATTCATTAGTAGCCACCATGCTGTAGGTTTTGGTGAA  894

seq1  ACATTAGTTCTACCCCTTCCTTTGTGACTTAATTGATCTCTTATAAAATG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAGTTCTACCCCTTCCTTTGTGACTTAATTGATCTCTTATAAAATG  944

seq1  CAGCTAACAGGAATCAGGTTGCTCTACAGGAGCTGAGCAACCAGAAAGTG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTAACAGGAATCAGGTTGCTCTACAGGAGCTGAGCAACCAGAAAGTG  994

seq1  TGAATTATGAAGCTCTATGATGTGGTGCATTATCCAATTCAGAGCCCATT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTATGAAGCTCTATGATGTGGTGCATTATCCAATTCAGAGCCCATT  1044

seq1  ACGTAGAGAGCAGAATGTTGCCATGGAAATAGGATAGGTCTCAGCTCCTT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTAGAGAGCAGAATGTTGCCATGGAAATAGGATAGGTCTCAGCTCCTT  1094

seq1  CTGAATGGGATTCCTCT-CAGGGGCAAGGCCTCATTGTCAAGCTGATTGA  1142
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CTGAATGGGATTCCTCTACAGGGGCAAGGCCTCATTGTCAAGCTGATTGA  1144

seq1  ATTC  1146
      ||||
seq2  ATTC  1148


seq1: chr13_5542312_5543491
seq2: B6Ng01-304P13.g_68_1239

seq1  GAATTCCCACCTCTTCCATCAAACCATTAGCCACTAGTATCTTTAGTGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCACCTCTTCCATCAAACCATTAGCCACTAGTATCTTTAGTGAT  50

seq1  TGATCAAAAAACCAACTGGGAACAGGACCTCCAAAGTTCATGTGCAGACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCAAAAAACCAACTGGGAACAGGACCTCCAAAGTTCATGTGCAGACT  100

seq1  CCCAATCAAAACATCAGAACCACTCCCTACAGAGATTTGCTCACCATTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATCAAAACATCAGAACCACTCCCTACAGAGATTTGCTCACCATTTA  150

seq1  ACTGAAAAAGAAGATGTGATCTGTTCACTACTCAGGTGTACAAGGAGATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAAAAGAAGATGTGATCTGTTCACTACTCAGGTGTACAAGGAGATA  200

seq1  GAATCTGCTTAATATTCAACTATAAAAGAGATGGTATCTGCTCACTATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTGCTTAATATTCAACTATAAAAGAGATGGTATCTGCTCACTATTC  250

seq1  AACTGTATAAAGAATATATTTAAATATATAAAAATGCTTCTAATGCTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTATAAAGAATATATTTAAATATATAAAAATGCTTCTAATGCTATT  300

seq1  TTTCTAAAGCTTTTTATACCAATCTTTAAATTTTTTCATCATTAAATTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAAAGCTTTTTATACCAATCTTTAAATTTTTTCATCATTAAATTAA  350

seq1  TATAGAGAATGTTTGGTAAGAATGGAGGAAATCTTCATAACTTAACATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAGAATGTTTGGTAAGAATGGAGGAAATCTTCATAACTTAACATAA  400

seq1  CTGATGTATCATTTCTTACAGATCTTGTGCCTTGCCTTCCATACATCACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGTATCATTTCTTACAGATCTTGTGCCTTGCCTTCCATACATCACT  450

seq1  TTCACAAAGTATACCTAATCATTTGAAAACAAATTTCAAGCATGATTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAAAGTATACCTAATCATTTGAAAACAAATTTCAAGCATGATTTTT  500

seq1  CACTTAACATGACTTTGGTTAGAGACATGCCTCTTTTACTGACATACAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTAACATGACTTTGGTTAGAGACATGCCTCTTTTACTGACATACAAT  550

seq1  AAAGACACATATAGCTATGTTTACAAGAATGAGGTAGATATTAAAACATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACACATATAGCTATGTTTACAAGAATGAGGTAGATATTAAAACATC  600

seq1  AGGCACCAGAGTTCATACACTACGGCAATAATCAAAGCTACTCATTCCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACCAGAGTTCATACACTACGGCAATAATCAAAGCTACTCATTCCAT  650

seq1  GATGCTGTTAAGGTACTAGAATATTGTTACCTTTGCTTCTCTCTTTTAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTGTTAAGGTACTAGAATATTGTTACCTTTGCTTCTCTCTTTTAGT  700

seq1  TTTATTCTCCTGTTTATTTCCTTCCTTATTATATTTATAAATATGTTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCTCCTGTTTATTTCCTTCCTTATTATATTTATAAATATGTTATT  750

seq1  ACTTTGAAAAAATACTTAACATAAAGAAACTTTGAAAAAGAACATTGTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGAAAAAATACTTAACATAAAGAAACTTTGAAAAAGAACATTGTAT  800

seq1  TATGGCTCACAGTTTGAGAGAATACAGTCTATCATGAAGGAG-AAGGCAT  849
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TATGGCTCACAGTTTGAGAGAATACAGTCTATCATGAAGGAGAAAGGCAT  850

seq1  GGCAGCAGGCAGTTCAGTTTCACTGAGAGTATCTGGAAGTTGCTTATTAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCAGGCAGTTCAGTTTCACTGAGAGTATCTGGAAGTTGCTTATTAC  900

seq1  ATGTTATCAACCTAGAAACAGAGATACTAGTTGGAGGGACAGAGAGACTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTATCAACCTAGAAACAGAGATACTAGTTGGAGGGACAGAGAGACTA  950

seq1  TAAGCCATAAGATGCTGTGGGTTTGTAAAA-CCGCCTTTGCCAG-ATATT  997
      |||||||||||||||||||||||||||||| ||||||||||||| |||||
seq2  TAAGCCATAAGATGCTGTGGGTTTGTAAAACCCGCCTTTGCCAGAATATT  1000

seq1  C-TCAATGTCCAACAGTTTACATAACATCCCAAAAGGTCCCCTGGCACCC  1046
      | ||||||||||||||||   |||||||||| ||||||||||| ||||| 
seq2  CTTCAATGTCCAACAGTTACAATAACATCCC-AAAGGTCCCCT-GCACC-  1047

seq1  AAATGCCTTCAGGGAACAATTCACATTAAAGTCACAGCAGTAAATATGTT  1096
       |||||  |||||||||| |||||||  ||||||||||||| ||||||||
seq2  -AATGC--TCAGGGAACATTTCACAT--AAGTCACAGCAGT-AATATGTT  1091

seq1  ACAAATGGTCTTG-CTCC-AAGAACATAG--CTTTATTAGGGTACCCAGT  1142
      || ||| |||| | |||| ||||||||||  ||||||   ||||  ||||
seq2  AC-AATTGTCTGGCCTCCAAAGAACATAGGCCTTTAT--AGGTA--CAGT  1136

seq1  CCCTGTTAGAAATTTAAAATGTTTATGGTGTTCT-TAAA  1180
       | ||||||||  |  ||||| |||||||||||| ||||
seq2  TCTTGTTAGAACCT--AAATG-TTATGGTGTTCTCTAAA  1172


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