BAC Information

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BAC

Clone NameB6Ng01-305B06
Chromosome13 (Build37)15 (Build37)
Map Location 75,903,357 - 75,904,5168,075,080 - 8,075,475
singlet/doubletsingletsinglet
Overlap geneEll2
Upstream geneCast, LOC622204, EG544954, Pcsk1, LOC672443, LOC666764, LOC100042606, LOC100042986
Downstream geneLOC666786, Glrx, Rhobtb3, LOC666553, LOC622313, Spata9, Rfesd, LOC100043008, Gpr150, Arsk, AK129128, Gm276, Mctp1, LOC666603
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-305B06.bB6Ng01-305B06.g
ACCGA098459GA098460
length1,154907
definitionB6Ng01-305B06.b B6Ng01-305B06.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(75,903,357 - 75,904,516)(8,075,080 - 8,075,475)
sequence
gaattcctttattgtgcagactctgcagtagctgggtgctttaaatgcct
ggtgtcagccctgctggccctgggtgcaggcctccattgtttttgctcca
ttgtagtccttgcttgctgttgcttattgaggtagaagaaaagaatttga
ggaaaagtgttccagatgtttctaatatattttaaagttagagccatttg
ataaccagtaggttgatgaacactctggtttttcccccttcataggagtt
aaagaagggtgcacagcctccatggagccttcttcagcacttgaactccc
agattatttgatgtaagttttctgtcttccaatggagagggctgtttaac
tttagaaagttcgaaaattcttttcccataatttgcaaatgaaaaaaagt
aagtaattccagaaatagagtcctggagccacctctgcaattgaaaggct
gccattgagcctgctgtcccagatgcactcactgtctttaggagcagctt
gtgcctcccctgtgcagggcagtgctcactggcttttaagtatagagaag
tttgtcctttgttccagggccagggtgagcatatgagtcttcaaagctga
ctgtccatcaaagcacagccctagaggagcccagagtgctcacggggctt
gagcgtctgcactcaacaatgcagagcaggcgtaggctcgttttttatgg
aaataaaggtcttcttctcaaattaattctaagaggaaagaatagtaaag
ttgcctcgttttcctttagtaccaggtatgagtttttcttgtgagaacaa
gttgctaaatgctgagctgggaatatttttgtaactgcttatcacagaaa
ttataacttgggcttataattctagctttttcatacaataaaaggcttct
gtaagaagaaaatagtaaagttgcaagtgcctggaaagtggagcgtgaaa
agctaaaagctctgatagcagaaggctttcaaatgaaacaaatctgcacg
ttgtagctagaacctagagcatgaagttataacctgagctatctgaacct
ttttttctgtatgcccgtctcatagtggggccaagttaggctatcttgtt
atccttgattgttgcaagagggaagaaacatttagaattttactaagctg
tgct
gaattctgtcttcaaaacaccccattggagccatgggaacacagacacca
gcctgcctctgcctcctgagtgctgggattaaaggcatgcctcacctctg
cctcgcctgtgttgaaatgaaaggctgcctagctcctggccctgcagctg
gacctctaggagagatgctttttcacatcacattctttaaatctgaatag
cattgtgaagtggccttgctcctgtgtgaacttttcagagttgcaagcaa
tatagctaaccaaatagacagttgaggagtctcttgaatacatattaaaa
attataaactgggttcaaggttataaaagtactgatgctgtatggccata
aaactgcagattgtagagagtctgtgaaggtttgaaacatacaattgtta
aacttaaaacaactgtcttacacaatttagccagtttattctttttgttt
gtttgttttttgatattttctttttttttaattagatattttctttattt
acatttcaagtgttttcccctttcctagtttcccccgaaaataccctatc
ctctccctgcttcccctgctccccaacccatccactcaagcttcctggcc
caggcattcttctatcctggggcatagaaacttcacaggaccaagggcct
ctcttcccattgatgacttactaggccatcctctgctacatatgcagcta
gagccacaagtccctccctgtgttttctttgattggtggtttagtcccag
ggagctctggggttactggttagttcatagtgttgttcctcctaggggca
gcaaatcccttcagctccatgggtactttctctagctccttcattgggga
ccttgtgctccatctaatggatgatggtgagcatccacttctgtactact
aggcact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_75903357_75904516
seq2: B6Ng01-305B06.b_46_1199

seq1  GAATTCCTTTATTGTGCAGACTCTGCAGTAGCTGGGTGCTTTAAATGCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTATTGTGCAGACTCTGCAGTAGCTGGGTGCTTTAAATGCCT  50

seq1  GGTGTCAGCCCTGCTGGCCCTGGGTGCAGGCCTCCATTGTTTTTGCTCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCAGCCCTGCTGGCCCTGGGTGCAGGCCTCCATTGTTTTTGCTCCA  100

seq1  TTGTAGTCCTTGCTTGCTGTTGCTTATTGAGGTAGAAGAAAAGAATTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGTCCTTGCTTGCTGTTGCTTATTGAGGTAGAAGAAAAGAATTTGA  150

seq1  GGAAAAGTGTTCCAGATGTTTCTAATATATTTTAAAGTTAGAGCCATTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAGTGTTCCAGATGTTTCTAATATATTTTAAAGTTAGAGCCATTTG  200

seq1  ATAACCAGTAGGTTGATGAACACTCTGGTTTTTCCCCCTTCATAGGAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCAGTAGGTTGATGAACACTCTGGTTTTTCCCCCTTCATAGGAGTT  250

seq1  AAAGAAGGGTGCACAGCCTCCATGGAGCCTTCTTCAGCACTTGAACTCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGGGTGCACAGCCTCCATGGAGCCTTCTTCAGCACTTGAACTCCC  300

seq1  AGATTATTTGATGTAAGTTTTCTGTCTTCCAATGGAGAGGGCTGTTTAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTATTTGATGTAAGTTTTCTGTCTTCCAATGGAGAGGGCTGTTTAAC  350

seq1  TTTAGAAAGTTCGAAAATTCTTTTCCCATAATTTGCAAATGAAAAAAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAAAGTTCGAAAATTCTTTTCCCATAATTTGCAAATGAAAAAAAGT  400

seq1  AAGTAATTCCAGAAATAGAGTCCTGGAGCCACCTCTGCAATTGAAAGGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAATTCCAGAAATAGAGTCCTGGAGCCACCTCTGCAATTGAAAGGCT  450

seq1  GCCATTGAGCCTGCTGTCCCAGATGCACTCACTGTCTTTAGGAGCAGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTGAGCCTGCTGTCCCAGATGCACTCACTGTCTTTAGGAGCAGCTT  500

seq1  GTGCCTCCCCTGTGCAGGGCAGTGCTCACTGGCTTTTAAGTATAGAGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTCCCCTGTGCAGGGCAGTGCTCACTGGCTTTTAAGTATAGAGAAG  550

seq1  TTTGTCCTTTGTTCCAGGGCCAGGGTGAGCATATGAGTCTTCAAAGCTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCCTTTGTTCCAGGGCCAGGGTGAGCATATGAGTCTTCAAAGCTGA  600

seq1  CTGTCCATCAAAGCACAGCCCTAGAGGAGCCCAGAGTGCTCACGGGGCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCATCAAAGCACAGCCCTAGAGGAGCCCAGAGTGCTCACGGGGCTT  650

seq1  GAGCGTCTGCACTCAACAATGCAGAGCAGGCGTAGGCTCGTTTTTTATGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGTCTGCACTCAACAATGCAGAGCAGGCGTAGGCTCGTTTTTTATGG  700

seq1  AAATAAAGGTCTTCTTCTCAAATTAATTCTAAGAGGAAAGAATAGTAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAGGTCTTCTTCTCAAATTAATTCTAAGAGGAAAGAATAGTAAAG  750

seq1  TTGCCTCGTTTTCCTTTAGTACCAGGTATGAGTTTTTCTTGTGAGAACAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTCGTTTTCCTTTAGTACCAGGTATGAGTTTTTCTTGTGAGAACAA  800

seq1  GTTGCTAAATGCTGAGCTGGGAATATTTTTGTAACTGCTTATCACAGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTAAATGCTGAGCTGGGAATATTTTTGTAACTGCTTATCACAGAAA  850

seq1  TTATAACTTGGGCTTATAATTCTAGCTTTTTCATACAATAAAAGGCTTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAACTTGGGCTTATAATTCTAGCTTTTTCATACAATAAAAGGCTTCT  900

seq1  GTAAGAAGAAAATAGTAAAGTTGCAAGTGCCTGGAAAAGTGGAGCGTGGA  950
      |||||||||||||||||||||||||||||||||| |||||||||||| ||
seq2  GTAAGAAGAAAATAGTAAAGTTGCAAGTGCCTGG-AAAGTGGAGCGT-GA  948

seq1  AAAGCTAAAAGCTCTGATAGCAGAAGGCTTTCAAAATGAAACAAATCTGC  1000
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AAAGCTAAAAGCTCTGATAGCAGAAGGCTTTC-AAATGAAACAAATCTGC  997

seq1  ACGTTGTAGCTAGAACCTAGAGCATGAAGTTATAACCTGAGCTATCTGAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTGTAGCTAGAACCTAGAGCATGAAGTTATAACCTGAGCTATCTGAA  1047

seq1  CCTTTTTTTTTTTTCTGTTATTGCCGTCTCATAGT-GGGCCAAGTTAGGC  1099
      ||     |||||||||| |||  |||||||||||| ||||||||||||||
seq2  CC-----TTTTTTTCTG-TATGCCCGTCTCATAGTGGGGCCAAGTTAGGC  1091

seq1  TATCCTTGTATCCTTTGATTGTTGC-AGAGGAGAGAACATTTTAGA--TT  1146
      |||| |  ||||| ||||||||||| |||||  ||||   ||||||  ||
seq2  TATCTTGTTATCC-TTGATTGTTGCAAGAGGGAAGAAACATTTAGAATTT  1140

seq1  TACTAAGCTGTGCT  1160
      ||||||||||||||
seq2  TACTAAGCTGTGCT  1154

seq1: chr15_8075080_8075475
seq2: B6Ng01-305B06.g_511_918

seq1  TTTTTGTTTGTTTGTTTGTTTGTTTTTTTGTTATTTAAAACAAGTTATAT  50
              | |||||||||||||||||                 | ||||
seq2  --------TTTTTGTTTGTTTGTTTTT-----------------TGATAT  25

seq1  GTCTCTTTTTTTAACTCTTTCTTTTTTTTTATTTAATTAGGTATTTTCTT  100
                       ||||||||||    ||||||||| |||||||||
seq2  -----------------TTTCTTTTTT----TTTAATTAGATATTTTCTT  54

seq1  CATTTACATTTCAAATGCTATC------CCAAAAGTCCCCC----ATACC  140
       ||||||||||||| || | ||      || |   ||||||    |||||
seq2  TATTTACATTTCAAGTGTTTTCCCCTTTCCTAGTTTCCCCCGAAAATACC  104

seq1  CTCTCCCC------CCACACACACTCCCCTACCCACTCACTCCCACTTCT  184
      || ||| |      |  | |   |||||| |||||  |||||   |||| 
seq2  CTATCCTCTCCCTGCTTCCCCTGCTCCCCAACCCATCCACTCAAGCTTCC  154

seq1  TGGCCCTGGCGTTCCTCTGTACTGGGGCATATAAAGTTTGCAAGACCAAG  234
      |||||| ||| ||| ||| | |||||||||| ||| ||  || |||||| 
seq2  TGGCCCAGGCATTCTTCTATCCTGGGGCATAGAAACTTCACAGGACCAA-  203

seq1  GGGCCTCTCTTCCCAATGATGGCCGACTAGGCCATCTTCTGCTACATATG  284
      ||||||||||||||| ||||| |  ||||||||||| |||||||||||||
seq2  GGGCCTCTCTTCCCATTGATGACTTACTAGGCCATCCTCTGCTACATATG  253

seq1  CAGCTAGAGACAC-------------------------------------  297
      ||||||||| |||                                     
seq2  CAGCTAGAGCCACAAGTCCCTCCCTGTGTTTTCTTTGATTGGTGGTTTAG  303

seq1  -------GAGCTCCGGGGGTACTGGTTGGTTCATATTGTTGTTCCACCTA  340
             |||||| |||| |||||||| ||||||| ||||||||| ||||
seq2  TCCCAGGGAGCTCTGGGGTTACTGGTTAGTTCATAGTGTTGTTCCTCCTA  353

seq1  TAGGGTTGCAGACCTCTTTAGCTCCTTGATTACTTTCTCTAGCTCCTCCA  390
        |||  ||| | | ||| |||||| ||  ||||||||||||||||| ||
seq2  -GGGGCAGCAAATCCCTTCAGCTCCATGGGTACTTTCTCTAGCTCCTTCA  402

seq1  TTGGGG  396
      ||||||
seq2  TTGGGG  408