BAC Information

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BAC

Clone NameB6Ng01-307F08
Chromosome13 (Build37)
Map Location 60,339,663 - 60,340,761
singlet/doubletsinglet
Overlap genenone
Upstream geneAgtpbp1, Mak10, Golph2, 4921517D22Rik, 1700013B16Rik, EG238662, 4932411G14Rik, Isca1, Zcchc6, LOC100041267, Gas1, EG328264
Downstream geneDapk1, LOC218274, BC051665, 2310051M13Rik, 4930486L24Rik, Tpbpb, Ctla2a, Tpbpa, Ctsj, Ctsq, Ctsr, Cts6
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-307F08.bB6Ng01-307F08.g
ACCGA100132GA100133
length1,1901,100
definitionB6Ng01-307F08.b B6Ng01-307F08.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcacccagctaaatttaggtccaagcatggtgttacacacctttca
tctcaggagacaaagccaagcagatctcttgagttcaaggccatcctagg
acaaagcaagttctagatgaaaaaaaattcaagtctaggcatggtggtac
acatctataatcccaggaaatagagccatccacatttatgagttcaaggt
cagtctacagagcaagttccagaacagccaagcttaggcagtgagggagt
tagaaaacagaaagctggtgatgcaataaaacaagggggctatgttccat
ctctaggcagcatcagagcttggcagctttgaccatgtggttctggcttt
agagtcaagaatatacaggactatggggacaattgatgttggctagatgg
agctaagaaattagcagtgattaagaagaaaccagtatcactgaggtgaa
atcttctgggaagtgttttctgagagcacaaagaagctgtgttcaagagg
ttgccaaggttgtacttcatgctgcagctgtacttggtaatgtgtaagaa
taattcatgtggtactgcttttgaaggcatgcaggggtcataaagagcag
ctgagtcttggcactgtgacaggctatggaaggccattgacgaaggtgca
gcctcagttgtagttgacagcccaggacggaagggttcatacaaaggatt
taaggcttgacactataaagagagcctatgagaggccattggcaaagcct
tgttgcagcagaaaaccccagtgaattgcagatgccagtgccatgggatg
atcatcaagaacatcagcagcaatgaagtgaatcaacctgagcttagagt
acagcagagggcagaactggagaagtgatgccagccctttggaggagccc
agaagatcacgtgtggatcccagacattgaaacaagaagctgtaacattg
aagtttccttggagatcccaagattttagagatgccagagccataaggct
atcctccctgagggatgagccatggggggagtgaacccaggcccaggaga
aaggagtttgtgcagtcaaaaagatcaaaaaggagttgggaatcctgaag
acccaccttggacctccagattggggatggccagagtggtgccccagctt
ggttcctggacttgccctttgggggaaatactacccaatt
gaattcaaacatattgatatgggtacaatgccagaagaatacttcaaaaa
cgaaccggaaaaagtgtccatggacctggaagaagatatgagaagcagat
gagttctgtccaggacccggggaggagaattagcaacctagacagaaagg
caagcaacacgtgtgagcctctgaaccacattcatgagccacaggtcgtc
agcatgggagaaaggaaagtggggttctgagaaaagacaaacacacagaa
ctgctagagatgttagaaaacaaacaacctgcgatgaatcagataaaaaa
aggaagaaaacagcatctgtgggctctcccaagaccggagaaccaagttg
acagcatacccattcacacagcaataaataaggacaaaacacatgcggcc
atagtgtccaaggactccgggctgagaccaagagaccaaatttaagaacc
tatgggatagttggagctgagataaacactgaaaacacatagactctggt
caatggaattaagaagtgtcccccctccccccagtgtacaaggggaaagt
catgcaaacacaagacacacagagacaccaaaataaaaattgtaggaaaa
aaattccccatgatatttgtcaagatatcaaaaacagagaggaaataaaa
atatttaaattcatttgagaaaaaaatgtcagctcactcacaatgacaga
aatatcagaataccagtcttaaattcacaaggaagcacacaaggtcacga
aagtgaagacaagccttagtagaaggaccagtgtgggggatgctgcaata
cttgatctctaactacagtgtagagcaatagtaatgcaaccagcatggta
ctggcagaaagtcaagtaaaacaataaagagagacacagaaattacctca
caactatagtcacctactttttaagaatgttgctaaaaacatgttttgag
agaagactgactcttcaatctcagagtttaactacaccacagatgtgcta
ggaaaactgggcttcacaatgtagaggatgaggctttgatccactcctaa
ccaaaatcaattcaaaacgaattaaacacttattgtagaacctgaacatt

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_60339663_60340761
seq2: B6Ng01-307F08.g_63_1162

seq1  GAATTCAAACATATTGATATGGGTACAATGCCAGAAGAATACTTCAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACATATTGATATGGGTACAATGCCAGAAGAATACTTCAAAAA  50

seq1  CGAACCGGAAAAAGTGTCCATGGACCTGGAAGAAGATATGAGAAGCAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAACCGGAAAAAGTGTCCATGGACCTGGAAGAAGATATGAGAAGCAGAT  100

seq1  GAGTTCTGTCCAGGACCCGGGGAGGAGAATTAGCAACCTAGACAGAAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCTGTCCAGGACCCGGGGAGGAGAATTAGCAACCTAGACAGAAAGG  150

seq1  CAAGCAACACGTGTGAGCCTCTGAACCACATTCATGAGCCACAGGTCGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAACACGTGTGAGCCTCTGAACCACATTCATGAGCCACAGGTCGTC  200

seq1  AGCATGGGAGAAAGGAAAGTGGGGTTCTGAGAAAAGACAAACACACAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGGGAGAAAGGAAAGTGGGGTTCTGAGAAAAGACAAACACACAGAA  250

seq1  CTGCTAGAGATGTTAGAAAACAAACAACCTGCGATGAATCAGATAAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTAGAGATGTTAGAAAACAAACAACCTGCGATGAATCAGATAAAAAA  300

seq1  AGGAAGAAAACAGCATCTGTGGGCTCTCCCAAGACCGGAGAACCAAGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGAAAACAGCATCTGTGGGCTCTCCCAAGACCGGAGAACCAAGTTG  350

seq1  ACAGCATACCCATTCACACAGCAATAAATAAGGACAAAACACATGCGGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCATACCCATTCACACAGCAATAAATAAGGACAAAACACATGCGGCC  400

seq1  ATAGTGTCCAAGGACTCCGGGCTGAGACCAAGAGACCAAATTTAAGAACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGTCCAAGGACTCCGGGCTGAGACCAAGAGACCAAATTTAAGAACC  450

seq1  TATGGGATAGTTGGAGCTGAGATAAACACTGAAAACACATAGACTCTGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGATAGTTGGAGCTGAGATAAACACTGAAAACACATAGACTCTGGT  500

seq1  CAATGGAATTAAGAAGTGTCCCCCCTCCCCCCAGTGTACAAGGGGAAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGAATTAAGAAGTGTCCCCCCTCCCCCCAGTGTACAAGGGGAAAGT  550

seq1  CATGCAAACACAAGACACACAGAGACACCAAAATAAAAATTGTAGGAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAAACACAAGACACACAGAGACACCAAAATAAAAATTGTAGGAAAA  600

seq1  AAATTCCCCATGATATTTGTCAAGATATCAAAAACAGAGAGGAAATAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCCCCATGATATTTGTCAAGATATCAAAAACAGAGAGGAAATAAAA  650

seq1  ATATTTAAATTCATTTGAGAAAAAAATGTCAGCTCACTCACAATGACAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTAAATTCATTTGAGAAAAAAATGTCAGCTCACTCACAATGACAGA  700

seq1  AATATCAGAATACCAGTCTTAAATTCACAAGGAAGCACACAAGGTCACGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCAGAATACCAGTCTTAAATTCACAAGGAAGCACACAAGGTCACGA  750

seq1  AAGTGAAGACAAGCCTTAGTAGAAGGACCAGTGTGGGGGATGCTGCAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAAGACAAGCCTTAGTAGAAGGACCAGTGTGGGGGATGCTGCAATA  800

seq1  CTTGATCTCTAACTACAGTGTAGAGCAATAGTAATGCAACCAGCATGGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATCTCTAACTACAGTGTAGAGCAATAGTAATGCAACCAGCATGGTA  850

seq1  CTGGCAGAAAGTCAAGTAAAACAATAAAGAGAGACACAGAAATTACCTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCAGAAAGTCAAGTAAAACAATAAAGAGAGACACAGAAATTACCTCA  900

seq1  CAACTATAGTCACCTACTTTTTAAGAATGTTGCTAAAAACATG-TTTGAG  949
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CAACTATAGTCACCTACTTTTTAAGAATGTTGCTAAAAACATGTTTTGAG  950

seq1  AGAAGACTGACTCTTCAATCTCAGAG-TTAACTACACCACAGATGTGCTA  998
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AGAAGACTGACTCTTCAATCTCAGAGTTTAACTACACCACAGATGTGCTA  1000

seq1  GGGAAACTGGCTTTCAC-ATGTAGAAGAATGAGGC-TTGATCCACTCCTA  1046
      || |||||||  ||||| |||||| || ||||||| ||||||||||||| 
seq2  GGAAAACTGGGCTTCACAATGTAG-AGGATGAGGCTTTGATCCACTCCT-  1048

seq1  AACAAAAATCAATTCAAAACGAATTAAACACCTTAATGTAGAACCTGAAC  1096
      ||| |||||||||||||||||||||||||| |||| ||||||||||||||
seq2  AACCAAAATCAATTCAAAACGAATTAAACA-CTTATTGTAGAACCTGAAC  1097

seq1  ATT  1099
      |||
seq2  ATT  1100