BAC Information

Click to search

BAC

Clone NameB6Ng01-309C18
Chromosome13 (Build37)1 (Build37)
Map Location 92,079,172 - 92,080,34899,948,173 - 99,948,313
singlet/doubletsingletsinglet
Overlap geneRasgrf2
Upstream geneAtg10, LOC100042959, Ssbp2, LOC666889, Acot12, Zcchc9, Ckmt2
Downstream geneRasgrf2, Msh3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-309C18.bB6Ng01-309C18.g
ACCGA101478GA101479
length1,1751,025
definitionB6Ng01-309C18.b B6Ng01-309C18.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(92,079,172 - 92,080,348)(99,948,173 - 99,948,313)
sequence
gaattcatttgaaacccagagccatgtcccagtattgaatcctgaaaaac
ctgagataacaggttcttgttgtttgcctttaagttttacagtaatttat
aaatacagtgatgagtaaccaatacagatgacatcatagattcctaaggc
ttactcagtttattcttgatcaaattgaatttaatgaatgcattttcatt
ttggaaaaagaagcatgtctgtgttctcccccacagaacacatactggcc
tgtgattatgttctagcaaatacgttgaaatgaaaatggtatatgtgaca
tcagtaacattacatgtgtctgcctcatagcccgagtttctgctcagcgc
tgctcctctcccatcaccggtagggctcagaactgaatcgactcatcttt
gtgatgtttgagtctcttgatcttagctccactgttgcttagcaatagag
aggcacttaatggctccactctcctctgcagatggagatgttcctccctg
tgtagccattgtctgtctgtgatgctgagtttaaagatgtaattatcatt
ttgagataaaattaatgttggcctcagtgttacgcgtggcccggcctttt
gacttccaggagcttgtttcggtccagtttacaacccccttcttggtaga
gctggaccctcaaaattataagatatttagaaatcttaagacaaaaatgt
taaagcattctgagaaaaaaagattaagggattttttcattaccaggaca
acagatgttttgcattcaccatatggttacttgagattttgagcctcaaa
ccctgcctcctgtaatataactaactggaaactgagccaatagctttaga
ggagaggctgtagtgaagggatcaaaaaaaaaaaaaaaaaaaggatcagg
caaggagggtagagtgaactatccaagccctgttgacctctgggtcccac
tttgctgggaagactcccagaactgagagccattgggagatttcttcttc
tcttttgtagagtggggatgactcaggggtacacacaactaggcaagtgt
tccactgactgctcctacttcttgggggagaattgagaatgtagtcctca
cttatgtagctcagcttgcttggacgcttgtgtatatatagaatcaagtc
tcagccaagtcttctgctctcacct
gaattctactgatccatgagcatgggagatctttccatattctaatatct
tcttcaatttcttgctttaatgtcttaaaatttttattacacaagtattt
tcatttgcttgggtagagttaccccaagattttatgtttgactttttttt
tttttttgaggctattatgagaggcattgtctccttgatttctttctcat
tttgtttgtcatttgtatacaagaagactactgtttttgttttttgagat
aattttttatccaactactttgcagaaagtgtttatcagctataggagtt
tcctggcaaaaattttagggtcatttacatatactgtcataatatttgca
aataaagatactttgacttcttcttttcctgtttgtatacccttgatctc
ctccagttgtcttatttctttggataaaacttttagtacactattgaata
ggtatggagagagtggacagctttgacttgttcctgattttagtgaaact
actttgagtgtctatccatttaggttgatgtttgctatggccttggtgta
aatactctttgtttgttgaggtgtgacccttgtatctataatctctctat
gactcttatcataaaggggcgttgcattttctcaaaggcctcagattatt
tttacataataatttgaggagtattggaattcatccttctttgaaagtca
gtagacttccatactgaatccatctgattctgagtttttagttttgattg
agagacttttgattactgcttctaatttactatggattataggtttgttt
aaattgtacatctgatcttgatttaaatttgataagtagtacatattcat
aaatttatttattttaagattttcaatttgatggcatatttttttgtgtt
gtttgtttgttttgtttgtttaatgttttttgagacaggtttcttgtgta
gcctgcctgtctgactcactctgtagacagctgactcgactcaaattctg
ctgcctctgtctccaagtgctggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_92079172_92080348
seq2: B6Ng01-309C18.b_47_1221 (reverse)

seq1  AGGTGAGAGCAGAAGAACTGTGCCTTTGAGACTTG--TCTA-ATATACAC  47
      ||||||||||||||| |||  ||   |||||||||  |||| ||||||||
seq2  AGGTGAGAGCAGAAG-ACTTGGC---TGAGACTTGATTCTATATATACAC  46

seq1  AGCCCTTCAAGGCCAGCCTGAGCTACAT-AGTGA-GACTACA-TCTCAA-  93
      |  | | ||||  ||  ||||||||||| ||||| ||||||| |||||| 
seq2  AAGCGTCCAAG--CAAGCTGAGCTACATAAGTGAGGACTACATTCTCAAT  94

seq1  TCT-CCCCAAGAAGTAGGGAAGCAGTTCAGTGGAACACTTGCCTAG-TGT  141
      ||| ||||||||||||||  ||||| |||||||||||||||||||| |||
seq2  TCTCCCCCAAGAAGTAGG--AGCAG-TCAGTGGAACACTTGCCTAGTTGT  141

seq1  GTGTACCCCTGAGTTCAATCCCCACTCTACAAAGAGAGAAG--GAAATCT  189
      ||||||||||||||   |||||||||||||||| |||||||  |||||||
seq2  GTGTACCCCTGAGT--CATCCCCACTCTACAAA-AGAGAAGAAGAAATCT  188

seq1  CCCAATGGCTCTCAGTTCTGGGAGTCTTCCCAGCAAAGTGGGACCCAGAG  239
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATGGCTCTCAGTTCTGGGAGTCTTCCCAGCAAAGTGGGACCCAGAG  238

seq1  GTCAACAGGGCTTGGATAGTTCACTCTACCCTCCTTGCCTGATCCTTTTT  289
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GTCAACAGGGCTTGGATAGTTCACTCTACCCTCCTTGCCTGATCC-TTTT  287

seq1  TTTTTTTTTTTTTTTGATCCCTTCACTACAGCCTCTCCTCTAAAGCTATT  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTGATCCCTTCACTACAGCCTCTCCTCTAAAGCTATT  337

seq1  GGCTCAGTTTCCAGTTAGTTATATTACAGGAGGCAGGGTTTGAGGCTCAA  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAGTTTCCAGTTAGTTATATTACAGGAGGCAGGGTTTGAGGCTCAA  387

seq1  AATCTCAAGTAACCATATGGTGAATGCAAAACATCTGTTGTCCTGGTAAT  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCAAGTAACCATATGGTGAATGCAAAACATCTGTTGTCCTGGTAAT  437

seq1  GAAAAAATCCCTTAATCTTTTTTTCTCAGAATGCTTTAACATTTTTGTCT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAATCCCTTAATCTTTTTTTCTCAGAATGCTTTAACATTTTTGTCT  487

seq1  TAAGATTTCTAAATATCTTATAATTTTGAGGGTCCAGCTCTACCAAGAAG  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATTTCTAAATATCTTATAATTTTGAGGGTCCAGCTCTACCAAGAAG  537

seq1  GGGGTTGTAAACTGGACCGAAACAAGCTCCTGGAAGTCAAAAGGCCGGGC  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTGTAAACTGGACCGAAACAAGCTCCTGGAAGTCAAAAGGCCGGGC  587

seq1  CACGCGTAACACTGAGGCCAACATTAATTTTATCTCAAAATGATAATTAC  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCGTAACACTGAGGCCAACATTAATTTTATCTCAAAATGATAATTAC  637

seq1  ATCTTTAAACTCAGCATCACAGACAGACAATGGCTACACAGGGAGGAACA  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTAAACTCAGCATCACAGACAGACAATGGCTACACAGGGAGGAACA  687

seq1  TCTCCATCTGCAGAGGAGAGTGGAGCCATTAAGTGCCTCTCTATTGCTAA  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCATCTGCAGAGGAGAGTGGAGCCATTAAGTGCCTCTCTATTGCTAA  737

seq1  GCAACAGTGGAGCTAAGATCAAGAGACTCAAACATCACAAAGATGAGTCG  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACAGTGGAGCTAAGATCAAGAGACTCAAACATCACAAAGATGAGTCG  787

seq1  ATTCAGTTCTGAGCCCTACCGGTGATGGGAGAGGAGCAGCGCTGAGCAGA  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGTTCTGAGCCCTACCGGTGATGGGAGAGGAGCAGCGCTGAGCAGA  837

seq1  AACTCGGGCTATGAGGCAGACACATGTAATGTTACTGATGTCACATATAC  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCGGGCTATGAGGCAGACACATGTAATGTTACTGATGTCACATATAC  887

seq1  CATTTTCATTTCAACGTATTTGCTAGAACATAATCACAGGCCAGTATGTG  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCATTTCAACGTATTTGCTAGAACATAATCACAGGCCAGTATGTG  937

seq1  TTCTGTGGGGGAGAACACAGACATGCTTCTTTTTCCAAAATGAAAATGCA  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGGGGGAGAACACAGACATGCTTCTTTTTCCAAAATGAAAATGCA  987

seq1  TTCATTAAATTCAATTTGATCAAGAATAAACTGAGTAAGCCTTAGGAATC  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTAAATTCAATTTGATCAAGAATAAACTGAGTAAGCCTTAGGAATC  1037

seq1  TATGATGTCATCTGTATTGGTTACTCATCACTGTATTTATAAATTACTGT  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATGTCATCTGTATTGGTTACTCATCACTGTATTTATAAATTACTGT  1087

seq1  AAAACTTAAAGGCAAACAACAAGAACCTGTTATCTCAGGTTTTTCAGGAT  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTTAAAGGCAAACAACAAGAACCTGTTATCTCAGGTTTTTCAGGAT  1137

seq1  TCAATACTGGGACATGGCTCTGGGTTTCAAATGAATTC  1177
      ||||||||||||||||||||||||||||||||||||||
seq2  TCAATACTGGGACATGGCTCTGGGTTTCAAATGAATTC  1175

seq1: chr1_99948173_99948313
seq2: B6Ng01-309C18.g_965_1091

seq1  TTGTTTGTTTGTTTTGTTTTGTTTTTTGTTTTTCGAGACAGGGTTTCTCT  50
      |||||||||||||||| |||||||  ||||||| |||||| ||||||| |
seq2  TTGTTTGTTTGTTTTG-TTTGTTTAATGTTTTTTGAGACA-GGTTTCT-T  47

seq1  GTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCG  100
      |||||| |||| |||| |||  |||||||||||||||   ||| | ||||
seq2  GTGTAG-CCTGCCTGT-CTG--ACTCACTCTGTAGAC--AGCT-GACTCG  90

seq1  AACTCAGAAATTCACCTGCCTCTGCCTCCCAAGTGCTGGGA  141
       ||||  ||||||  ||||||||| || |||||||||||||
seq2  -ACTC--AAATTCTGCTGCCTCTGTCT-CCAAGTGCTGGGA  127