BAC Information

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BAC

Clone NameB6Ng01-310J17
Chromosome13 (Build37)
Map Location 65,336,042 - 65,467,957
singlet/doubletdoublet
Overlap geneENSMUSG00000074847, Zfp369, LOC100042347, LOC100042341, LOC665738, EG665742
Upstream geneCdc14b, 1110018J18Rik, Ctsl, Ccrk, LOC665612, 1190003K10Rik, LOC218298, Ppia-ps13_866.1, LOC238678, LOC631470, Cntnap3, EG432767, 4930458L03Rik, LOC218301, LOC628515, 4932441B19Rik, Gm274, Hiatl1, LOC100042311, Olfr465-ps1, Olfr466, Nlrp4f
Downstream geneLOC665750, LOC665753, EG544944, EG665767, LOC665777, EG628648, LOC665809, LOC100042404, LOC628722, LOC665851, Vmn2r-ps99, LOC628794, EG665897, LOC100041855, EG628746, LOC100042434, LOC100041892, EG665974, LOC100041915
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-310J17.bB6Ng01-310J17.g
ACCGA102539GA102540
length1,0841,177
definitionB6Ng01-310J17.b B6Ng01-310J17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,466,872 - 65,467,957)(65,336,042 - 65,337,229)
sequence
gaattcacaattctcacctttggaaagagctcaatatgaagagacagcat
cactacctatattcaattgtctgccaatgattcctgtatgagcaggcatc
aaaatgccttcataaaaaggttatctaattttggtctccaacagttgggc
atacattcatacactgaaatatttgtgtgtgtgcaggtctattatatctc
attaaatgtataacattacatgtatacttgtgaatatgcatatacttgct
ttgtaaaatagtttgtaaatgagcccctcctgccattctggagttgacat
gaaatatggaaaaagactgccaggcttcataggctgatcccagaataatg
ttttggtccagttttgcaaatgcccagtcacatttaggcttattatcagt
atcagatagagggtcaacatttctattaattattgaataaatatagcatt
agagaaaatctagaggaataaatgtacttcttgtggataagaagttgttc
tcaatgtggctacagagttctgagatcccaagtgtgagatatcaccattt
gtggctgcagatcatgagggaaggagtgttgaaatcactcagcttttagc
taaacaatgtgccttgggacttttttctttcatgaactgaggtttcctgt
gcttttctgcctctgattcttatcccatctcatattcaattttcatatct
tcaggatttaaaaaatacattttccagttgttagctacagttcactctgt
acactttgatcgtgatggtggcttcacattctttttgtttgtttgtttgt
ttggttggttttttgtttctgtttttgtttagtttttgattttgtttttc
gagacaagagtttctctgtgtagccctggctgtcctggaactcactttgt
agactagctggcctcgaactcagaaatctgcctgccctgcctccctagtg
ctgggattaaagcgtgcgccaccatgcccagctgtggcttcaccattcct
tatacttctctgtagtaacaggaaatttcaatttcctgatgccattatga
tatgtcacacatctccattggaaaaaattgtgga
cggaattcacacacacacacacacacacacacacaaacacaaagcaagag
acagaatatagacaaacatgcaacacatacaacaaacacacacacacacc
acagacacacacacagaaacacacaactaaaagtttgtaccacatcagga
tcttctctttattcagatactttatctactttctaatgaatctggcatga
gttgtgctctaaaccacaatttcaaatgatgtgcttccattttgtgtaag
ttaaagaagtttatagagtaggagcaatttgatttacatcaggatagata
tagaaattttatgttaacaccacaaaatttaggatatttgaaaaccttca
ctatataatactcaaagggaggacaggccaaaaagaaataagaaaacagg
accatagagaagccatctgacaagtgtcactatttgatgttgggaaaggc
ctatgtgctgttctcactgtatgtatttagtgatacactgtgatccagga
tgatctcaaactcattgtatcctgcctgaagatattcttcagtgcttttt
ctttctgctccaactcctgggtgctggggttataagaatgggcactaagt
ctaattttacagtactgtgaatcagaccaggcctttacacacattaaaca
aaaactctacaaattatcattcctatcaatatcattttaaattaaataag
agtgcagagaaaagagtcccctgaggagcagtgcacataataaaaactac
actggcaaggaggatgacagaaaacacttttatggaacataacaattaaa
ataacatttatttaataagaaaaattaataatacatgggtgtccactctg
ctgaatgtctttgcactacatgcatacaatttccacagaggtgggaagca
ggcatcagattctaccacaatttgagttaaagagttttgtagctgtcacg
tgaggcctctgagacggtaacaaacgttcttattggagaacacacctctt
tttgcccagactacacttgactctgtgcttcaaccaattgtgctgggatc
actcccagtcaagagagaaaattctggaggcttagtgacagtactgaagt
agcatgcaatgttctatctgacatcacgccaagcttctgtgaataggatc
agccagtatcacggaatggtcagtttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_65466872_65467957
seq2: B6Ng01-310J17.b_45_1128 (reverse)

seq1  TCCACAA-TTTTTCCAAT-GAGATGTGTGACAATACATAAT-GCATCAG-  46
      ||||||| |||||||||| |||||||||||||   |||||| ||||||| 
seq2  TCCACAATTTTTTCCAATGGAGATGTGTGACATATCATAATGGCATCAGG  50

seq1  -AAATGAAA-TTCCTATTAACCTAACAGAGAAGTATAA-GAAT-GTGAAG  92
       || ||||| ||||| |||  || |||||||||||||| |||| ||||||
seq2  AAATTGAAATTTCCTGTTA--CT-ACAGAGAAGTATAAGGAATGGTGAAG  97

seq1  CCACAGCTGGGCATGGTGGCGCACGCCTTTAATCCCAGCACTAGGGAGGC  142
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CCACAGCTGGGCATGGTGGCGCACG-CTTTAATCCCAGCACTAGGGAGGC  146

seq1  AGGGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTAGTCTACAAAGTGAG  192
      | |||||||||||||||||||||||||||||| |||||||||||||||||
seq2  A-GGGCAGGCAGATTTCTGAGTTCGAGGCCAG-CTAGTCTACAAAGTGAG  194

seq1  TTCCAGGACAGCCAGGGCTACACAGAGAAACTCTTGTCTCGAAAAACAAA  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGACAGCCAGGGCTACACAGAGAAACTCTTGTCTCGAAAAACAAA  244

seq1  ATCAAAAACTAAACAAAAACAGAAACAAAAAACCAACCAACCAAACAAAC  292
      ||||||||||||||||||||||||||||||    ||||||||||||||||
seq2  ATCAAAAACTAAACAAAAACAGAAACAAAA----AACCAACCAAACAAAC  290

seq1  AAACAAACAAAAAGAATGTGAAGCCACCATCACGATCAAAGTGTACAGAG  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACAAAAAGAATGTGAAGCCACCATCACGATCAAAGTGTACAGAG  340

seq1  TGAACTGTAGCTAACAATTGGAAAATGTATTTTTTAAATCCTGAAGATAT  392
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TGAACTGTAGCTAACAACTGGAAAATGTATTTTTTAAATCCTGAAGATAT  390

seq1  GAAAATTGAATATGAGATGGGATAAGAATCAGAGGCAGAAAAGCACAGGA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTGAATATGAGATGGGATAAGAATCAGAGGCAGAAAAGCACAGGA  440

seq1  AACCTCAGTTCATGAAAGAAAAAAGTCCCAAGGCACATTGTTTAGCTAAA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCAGTTCATGAAAGAAAAAAGTCCCAAGGCACATTGTTTAGCTAAA  490

seq1  AGCTGAGTGATTTCAACACTCCTTCCCTCATGATCTGCAGCCACAAATGG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAGTGATTTCAACACTCCTTCCCTCATGATCTGCAGCCACAAATGG  540

seq1  TGATATCTCACACTTGGGATCTCAGAACTCTGTAGCCACATTGAGAACAA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATCTCACACTTGGGATCTCAGAACTCTGTAGCCACATTGAGAACAA  590

seq1  CTTCTTATCCACAAGAAGTACATTTATTCCTCTAGATTTTCTCTAATGCT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTATCCACAAGAAGTACATTTATTCCTCTAGATTTTCTCTAATGCT  640

seq1  ATATTTATTCAATAATTAATAGAAATGTTGACCCTCTATCTGATACTGAT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTATTCAATAATTAATAGAAATGTTGACCCTCTATCTGATACTGAT  690

seq1  AATAAGCCTAAATGTGACTGGGCATTTGCAAAACTGGACCAAAACATTAT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGCCTAAATGTGACTGGGCATTTGCAAAACTGGACCAAAACATTAT  740

seq1  TCTGGGATCAGCCTATGAAGCCTGGCAGTCTTTTTCCATATTTCATGTCA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGATCAGCCTATGAAGCCTGGCAGTCTTTTTCCATATTTCATGTCA  790

seq1  ACTCCAGAATGGCAGGAGGGGCTCATTTACAAACTATTTTACAAAGCAAG  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAGAATGGCAGGAGGGGCTCATTTACAAACTATTTTACAAAGCAAG  840

seq1  TATATGCATATTCACAAGTATACATGTAATGTTATACATTTAATGAGATA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGCATATTCACAAGTATACATGTAATGTTATACATTTAATGAGATA  890

seq1  TAATAGACCTGCACACACACAAATATTTCAGTGTATGAATGTATGCCCAA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGACCTGCACACACACAAATATTTCAGTGTATGAATGTATGCCCAA  940

seq1  CTGTTGGAGACCAAAATTAGATAACCTTTTTATGAAGGCATTTTGATGCC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGGAGACCAAAATTAGATAACCTTTTTATGAAGGCATTTTGATGCC  990

seq1  TGCTCATACAGGAATCATTGGCAGACAATTGAATATAGGTAGTGATGCTG  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCATACAGGAATCATTGGCAGACAATTGAATATAGGTAGTGATGCTG  1040

seq1  TCTCTTCATATTGAGCTCTTTCCAAAGGTGAGAATTGTGAATTC  1086
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCATATTGAGCTCTTTCCAAAGGTGAGAATTGTGAATTC  1084

seq1: chr13_65336042_65337229
seq2: B6Ng01-310J17.g_64_1238

seq1  GAATTCACACACACACACACACACACACACACAAACACAAAGCAAGAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACACACACACACACACACACACACAAACACAAAGCAAGAGAC  50

seq1  AGAATATAGACAAACATGCAACACATACAACAAACACACACACACACCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATATAGACAAACATGCAACACATACAACAAACACACACACACACCAC  100

seq1  AGACACACACACAGAAACACACAACTAAAAGTTTGTACCACATCAGGATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACACACACAGAAACACACAACTAAAAGTTTGTACCACATCAGGATC  150

seq1  TTCTCTTTATTCAGATACTTTATCTACTTTCTAATGAATCTGGCATGAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTTATTCAGATACTTTATCTACTTTCTAATGAATCTGGCATGAGT  200

seq1  TGTGCTCTAAACCACAATTTCAAATGATGTGCTTCCATTTTGTGTAAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTCTAAACCACAATTTCAAATGATGTGCTTCCATTTTGTGTAAGTT  250

seq1  AAAGAAGTTTATAGAGTAGGAGCAATTTGATTTACATCAGGATAGATATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGTTTATAGAGTAGGAGCAATTTGATTTACATCAGGATAGATATA  300

seq1  GAAATTTTATGTTAACACCACAAAATTTAGGATATTTGAAAACCTTCACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTTATGTTAACACCACAAAATTTAGGATATTTGAAAACCTTCACT  350

seq1  ATATAATACTCAAAGGGAGGACAGGCCAAAAAGAAATAAGAAAACAGGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATACTCAAAGGGAGGACAGGCCAAAAAGAAATAAGAAAACAGGAC  400

seq1  CATAGAGAAGCCATCTGACAAGTGTCACTATTTGATGTTGGGAAAGGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGAGAAGCCATCTGACAAGTGTCACTATTTGATGTTGGGAAAGGCCT  450

seq1  ATGTGCTGTTCTCACTGTATGTATTTAGTGATACACTGTGATCCAGGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCTGTTCTCACTGTATGTATTTAGTGATACACTGTGATCCAGGATG  500

seq1  ATCTCAAACTCATTGTATCCTGCCTGAAGATATTCTTCAGTGCTTTTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAAACTCATTGTATCCTGCCTGAAGATATTCTTCAGTGCTTTTTCT  550

seq1  TTCTGCTCCAACTCCTGGGTGCTGGGGTTATAAGAATGGGCACTAAGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTCCAACTCCTGGGTGCTGGGGTTATAAGAATGGGCACTAAGTCT  600

seq1  AATTTTACAGTACTGTGAATCAGACCAGGCCTTTACACACATTAAACAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTACAGTACTGTGAATCAGACCAGGCCTTTACACACATTAAACAAA  650

seq1  AACTCTACAAATTATCATTCCTATCAATATCATTTTAAATTAAATAAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTACAAATTATCATTCCTATCAATATCATTTTAAATTAAATAAGAG  700

seq1  TGCAGAGAAAAGAGTCCCCTGAGGAGCAGTGCACATAATAAAAACTACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAGAAAAGAGTCCCCTGAGGAGCAGTGCACATAATAAAAACTACAC  750

seq1  TGGCAAGGAGGATGACAGAAAACACTTTTATGGAACATAACAATTAAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAGGAGGATGACAGAAAACACTTTTATGGAACATAACAATTAAAAT  800

seq1  AACATTTATTTAATAAGAAAAATTAATAATACATGGGTGTCCACTCTGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTATTTAATAAGAAAAATTAATAATACATGGGTGTCCACTCTGCT  850

seq1  GAATGTCTTTGCACTACATGCATACAATTTCCACAGAGGTGGGAAGCAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTCTTTGCACTACATGCATACAATTTCCACAGAGGTGGGAAGCAGG  900

seq1  CATCAGATTCTACCACAATTTGAGTTAAAGAGTTTTGTAGCTGTCACGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGATTCTACCACAATTTGAGTTAAAGAGTTTTGTAGCTGTCACGTG  950

seq1  AGGCCTCTGAGACGGTAACAAACGTTCTTATTGGAGAACACACCTC-TTT  999
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AGGCCTCTGAGACGGTAACAAACGTTCTTATTGGAGAACACACCTCTTTT  1000

seq1  TGCCCAGACTACACTTGACTCTTGTGCTTCCAACCAATTGTGCT-GGATC  1048
      ||||||||||||||||||||| ||||||| |||||||||||||| |||||
seq2  TGCCCAGACTACACTTGACTC-TGTGCTT-CAACCAATTGTGCTGGGATC  1048

seq1  ACTCCCAGTCAAGAGAGAAAATTCTGGAAGCCTTTAGTGACAAGTACTTG  1098
      |||||||||||||||||||||||||||| ||  |||||||| ||||| ||
seq2  ACTCCCAGTCAAGAGAGAAAATTCTGGAGGC--TTAGTGAC-AGTAC-TG  1094

seq1  AGGTAGGCATGCAAATTGTCTTATCCTGACATCCACGCAAGCCTTCTGTG  1148
      | ||| ||||||||  |||  ||| ||||||| ||||| |  ||||||||
seq2  AAGTA-GCATGCAA--TGTTCTAT-CTGACAT-CACGCCAAGCTTCTGTG  1139

seq1  AGTTTAGGATCCAGCCACAGTATCACCG-ATTGTCAGTTTG  1188
      |   |||||| ||||  ||||||||| | || |||||||||
seq2  A--ATAGGAT-CAGC--CAGTATCACGGAATGGTCAGTTTG  1175