MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-311M23
Chromosome	13 (Build37)
Map Location	3,130,554 - 3,314,644
singlet/doublet	doublet
Overlap gene	LOC236294, Speer6-ps1, LOC674228
Upstream gene	LOC667375, LOC544917
Downstream gene	LOC667411, LOC100039182, 2810429I04Rik, Gdi2, Asb13, Calml3, Calm4, Calm5, LOC100039279, Net1, Tubal3, Ucn3, Akr1c14, Akr1c18, LOC100039262, Akr1c13, Akr1c19, Akr1c12
Link	Open Mouse BAC browser

Click to get alignment info.

name	LOC667375 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667375
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 5 Proteins pseudo : _no_value

name	LOC544917 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:544917
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 5 ESTs

name	LOC236294 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:236294
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 mRNAs, 259 ESTs, 19 Proteins pseudo : _no_value

name	Speer6-ps1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:73266 MGI:1920516
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA pseudo : _no_value

name	LOC674228 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:674228
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 15 mRNAs, 1299 ESTs, 8 Proteins pseudo : _no_value

name	LOC667411 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667411
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 16 ESTs, 10 Proteins pseudo : _no_value

name	LOC100039182 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039182
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein

name	2810429I04Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:76937 MGI:1924187
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Gdi2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14569 MGI:99845
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Asb13 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:142688 MGI:2145525
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Calml3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70405 MGI:1917655
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Calm4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:80796 MGI:1931464
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Calm5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:494124 MGI:3511177
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039279 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039279
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs

name	Net1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56349 MGI:1927138
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Tubal3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:238463 MGI:3588215
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ucn3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:83428 MGI:1932970
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Akr1c14 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:105387 MGI:2145458
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Akr1c18 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:105349 MGI:2145420
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039262 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039262
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins pseudo : _no_value

name	Akr1c13 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:27384 MGI:1351662
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Akr1c19 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:432720 MGI:2653678
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Akr1c12 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:622402 MGI:1351661
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC544917 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149263801 GeneID:544917
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 5 ESTs product : similar to spermatogenesis associated glutamate (E)-rich protein 4d transcript_id : XM_001472351.1

name	LOC100039182 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149263806 GeneID:100039182
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein product : similar to cyclin-dependent kinase 6 transcript_id : XM_001472410.1

name	2810429I04Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149263808 GeneID:76937 MGI:1924187
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : RIKEN cDNA 2810429I04 gene transcript_id : XM_001472430.1

name	Gdi2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:116089272 GeneID:14569 MGI:99845
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : guanosine diphosphate (GDP) dissociation inhibitor 2 transcript_id : NM_008112.4

name	Asb13 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118129855 GeneID:142688 MGI:2145525
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ankyrin repeat and SOCS box-containing protein 13 transcript_id : NM_178283.3

name	Asb13 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118131078 GeneID:142688 MGI:2145525
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ankyrin repeat and SOCS box-containing protein 13 transcript_id : NM_080857.2

name	Calml3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142347500 GeneID:70405 MGI:1917655
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : calmodulin-like 3 transcript_id : NM_027416.2

name	Calm4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142351881 GeneID:80796 MGI:1931464
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : calmodulin 4 transcript_id : NM_020036.3

name	Calm5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:56785417 GeneID:494124 MGI:3511177
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : calmodulin 5 transcript_id : NM_001008706.1

name	LOC100039279 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149263810 GeneID:100039279
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs product : hypothetical protein LOC100039279 transcript_id : XM_001472575.1

name	Net1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:114145476 GeneID:56349 MGI:1927138
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : neuroepithelial cell transforming gene 1 transcript_id : NM_019671.2

name	Net1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:114145470 GeneID:56349 MGI:1927138
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : neuroepithelial cell transforming gene 1 transcript_id : NM_001047159.1

name	Tubal3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142385159 GeneID:238463 MGI:3588215
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tubulin, alpha-like 3 transcript_id : NM_001033879.2

name	Ucn3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142366005 GeneID:83428 MGI:1932970
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : urocortin 3 transcript_id : NM_031250.4

name	Akr1c14 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:19527293 GeneID:105387 MGI:2145458
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : aldo-keto reductase family 1, member C14 transcript_id : NM_134072.1

name	Akr1c18 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802036 GeneID:105349 MGI:2145420
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : aldo-keto reductase family 1, member C18 transcript_id : NM_134066.2

name	Akr1c13 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:7304878 GeneID:27384 MGI:1351662
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : aldo-keto reductase family 1, member C13 transcript_id : NM_013778.1

name	Akr1c19 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142371628 GeneID:432720 MGI:2653678
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : aldo-keto reductase family 1, member C19 transcript_id : NM_001013785.2

name	Akr1c12 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:85719329 GeneID:622402 MGI:1351661
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : aldo-keto reductase family 1, member C12 transcript_id : NM_013777.2

name	LOC544917 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149263802 GeneID:544917
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001472401.1

name	LOC100039182 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149263807 GeneID:100039182
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001472460.1

name	2810429I04Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149263809 GeneID:76937 MGI:1924187
definition	codon_start : 1 product : hypothetical protein LOC76937 protein_id : XP_001472480.1

name	Gdi2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:116089273 GeneID:14569 MGI:99845
definition	GO_component : GO:0005794 - Golgi apparatus [Evidence IPI] GO_function : GO:0005096 - GTPase activator activity [Evidence IEA]; GO:0005097 - Rab GTPase activator activity [Evidence IPI] GO_process : GO:0043087 - regulation of GTPase activity [Evidence IEA]; GO:0007264 - small GTPase mediated signal transduction [Evidence IPI] codon_start : 1 note : RAB GDP dissociation inhibitor beta-2; guanosine diphosphate (GDP) dissociation inhibitor 3; GDI beta product : guanosine diphosphate (GDP) dissociation inhibitor 2 protein_id : NP_032138.3

name	Asb13 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:18252802 GeneID:142688 MGI:2145525
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0007242 - intracellular signaling cascade [Evidence IEA] codon_start : 1 note : ankyrin repeat domain-containing SOCS box protein 13 product : ankyrin repeat and SOCS box-containing protein 13 protein_id : NP_543133.1

name	Asb13 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30231208 GeneID:142688 MGI:2145525
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0007242 - intracellular signaling cascade [Evidence IEA] codon_start : 1 note : ankyrin repeat domain-containing SOCS box protein 13 product : ankyrin repeat and SOCS box-containing protein 13 protein_id : NP_840068.1

name	Calml3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13386230 CCDS:CCDS26214.1 GeneID:70405 MGI:1917655
definition	codon_start : 1 product : calmodulin-like 3 protein_id : NP_081692.1

name	Calm5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:56785418 GeneID:494124 MGI:3511177
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 product : calmodulin 5 protein_id : NP_001008706.1

name	Calm4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:36796745 CCDS:CCDS26215.1 GeneID:80796 MGI:1931464
definition	GO_component : GO:0005626 - insoluble fraction [Evidence IDA]; GO:0005625 - soluble fraction [Evidence IDA] GO_function : GO:0005509 - calcium ion binding [Evidence IDA] codon_start : 1 note : calmodulin-related factor; calcium binding gene, DD112 product : calmodulin 4 protein_id : NP_064420.2

name	LOC100039279 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149263811 GeneID:100039279
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001472625.1

name	Net1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:114145477 CCDS:CCDS26216.1 GeneID:56349 MGI:1927138
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005089 - Rho guanyl-nucleotide exchange factor activity [Evidence IEA] GO_process : GO:0007242 - intracellular signaling cascade [Evidence IEA]; GO:0035023 - regulation of Rho protein signal transduction [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1; Net1 homolog; guanine nucleotide regulatory protein (oncogene) product : neuroepithelial cell transforming gene 1 isoform 1 protein_id : NP_062645.2

name	Net1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:114145471 GeneID:56349 MGI:1927138
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005089 - Rho guanyl-nucleotide exchange factor activity [Evidence IEA] GO_process : GO:0007242 - intracellular signaling cascade [Evidence IEA]; GO:0035023 - regulation of Rho protein signal transduction [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2; Net1 homolog; guanine nucleotide regulatory protein (oncogene) product : neuroepithelial cell transforming gene 1 isoform 2 protein_id : NP_001040624.1

name	Tubal3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84794631 GeneID:238463 MGI:3588215
definition	GO_component : GO:0043234 - protein complex [Evidence IEA] GO_function : GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0051258 - protein polymerization [Evidence IEA] codon_start : 1 exception : mismatches in translation product : tubulin, alpha-like 3 protein_id : NP_001029051.1

name	Ucn3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21492632 CCDS:CCDS26217.1 GeneID:83428 MGI:1932970
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0005179 - hormone activity [Evidence IEA]; GO:0005184 - neuropeptide hormone activity [Evidence TAS]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0007189 - G-protein signaling, adenylate cyclase activating pathway [Evidence IDA]; GO:0007218 - neuropeptide signaling pathway [Evidence TAS] codon_start : 1 note : Urocortin II; Urocortin III product : urocortin 3 protein_id : NP_112540.2

name	Akr1c14 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:19527294 CCDS:CCDS26218.1 GeneID:105387 MGI:2145458
definition	GO_function : GO:0047042 - 3-alpha-hydroxysteroid dehydrogenase (B-specific) activity [Evidence IEA] codon_start : 1 note : 3-alpha-hydroxysteroid dehydrogenase type 1 product : aldo-keto reductase family 1, member C14 protein_id : NP_598833.1

name	Akr1c18 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:19527284 CCDS:CCDS26219.1 GeneID:105349 MGI:2145420
definition	EC_number : 1.1.1.149 GO_component : GO:0005829 - cytosol [Evidence ISS]; GO:0005625 - soluble fraction [Evidence ISS] GO_function : GO:0047006 - 20-alpha-hydroxysteroid dehydrogenase activity [Evidence IDA] [Evidence IMP] [Evidence ISS]; GO:0016491 - oxidoreductase activity [Evidence IEA] GO_process : GO:0007567 - parturition [Evidence IMP]; GO:0006709 - progesterone catabolism [Evidence IMP] [Evidence IDA]; GO:0042448 - progesterone metabolism [Evidence ISS] codon_start : 1 note : 20-alpha-hydroxysteroid dehydrogenase; 20alpha-HSD product : aldo-keto reductase family 1, member C18 protein_id : NP_598827.1

name	Akr1c13 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7304879 CCDS:CCDS26220.1 GeneID:27384 MGI:1351662
definition	GO_function : GO:0004033 - aldo-keto reductase activity [Evidence ISS]; GO:0016491 - oxidoreductase activity [Evidence IEA] GO_process : GO:0006805 - xenobiotic metabolism [Evidence TAS] codon_start : 1 exception : mismatches in translation note : aldo-keto reductase AKR1C13 product : aldo-keto reductase family 1, member C13 protein_id : NP_038806.1

name	Akr1c19 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:62000660 CCDS:CCDS26221.1 GeneID:432720 MGI:2653678
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND]; GO:0016491 - oxidoreductase activity [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 exception : mismatches in translation product : aldo-keto reductase family 1, member C19 protein_id : NP_001013807.1

name	Akr1c12 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85719330 CCDS:CCDS26222.1 GeneID:622402 MGI:1351661
definition	GO_function : GO:0004033 - aldo-keto reductase activity [Evidence ISS]; GO:0016491 - oxidoreductase activity [Evidence IEA] GO_process : GO:0006805 - xenobiotic metabolism [Evidence TAS] codon_start : 1 note : aldo-keto reductase a product : aldo-keto reductase family 1, member C12 protein_id : NP_038805.2

name	LOC100039262 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039262
definition	number : 7 pseudo : _no_value

name	LOC100039262 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039262
definition	number : 6 pseudo : _no_value

name	LOC100039262 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039262
definition	number : 5 pseudo : _no_value

name	LOC100039262 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039262
definition	number : 4 pseudo : _no_value

name	LOC100039262 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039262
definition	number : 3 pseudo : _no_value

name	LOC100039262 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039262
definition	number : 2 pseudo : _no_value

name	LOC100039262 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039262
definition	number : 1 pseudo : _no_value

name	LOC667375 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149263800 GeneID:667375
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 5 Proteins product : similar to COX11 homolog, cytochrome c oxidase assembly protein (yeast) pseudo : _no_value transcript_id : XR_030658.1

name	LOC236294 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149263803 GeneID:236294
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 mRNAs, 259 ESTs, 19 Proteins product : similar to Polypyrimidine tract binding protein 1 pseudo : _no_value transcript_id : XR_030680.1

name	Speer6-ps1 (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:142364245 GeneID:73266 MGI:1920516
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : spermatogenesis associated glutamate (E)-rich protein 6, pseudogene 1 pseudo : _no_value transcript_id : NR_001581.2

name	LOC674228 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149263805 GeneID:674228
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 15 mRNAs, 1299 ESTs, 8 Proteins product : similar to ribosomal protein S4, X-linked pseudo : _no_value transcript_id : XR_030696.1

name	LOC667411 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149263804 GeneID:667411
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 16 ESTs, 10 Proteins product : similar to ribonucleotide reductase M2 B (TP53 inducible) pseudo : _no_value transcript_id : XR_030665.1

clone name	MSMg01-133H12
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-535E13
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-185N18
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-144M05
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-367K14
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-117B03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-122A07
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-405H22
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-133L22
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-146E03
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-399E09
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-298B08
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-235O07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-429H13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-357A13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-275N04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-139K07
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-483B23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-502O22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-344J12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-433J23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-189G01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-416I22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-436D06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-363P04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-385K07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-535A22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-051C02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-528I14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-526I06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-164I07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-446F10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-189H21
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-062J06
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-511H22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-331C04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-321O12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-125M24
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-117A13
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-102D21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-454O23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-205A09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-274D21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-301K21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-261C12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-337P02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-137E20
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-517P05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-337P02
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-062D24
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-392E11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-068F20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-322O06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-271P19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-114M19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-007G10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-141K12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-311M23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-281M20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-032M15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-019O02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-023P04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-292E24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-097E01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-191H09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-251M08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-292F04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-050A16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-093B14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-098G05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-113P17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-117N17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-122N16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-135K06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-144O19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-156B24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-014P10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-118D06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-101A10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-317I18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-122D02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-240J22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-058D16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-296A10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-332L24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-145E17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-251A11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-175L03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-159D24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-027E18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-276F19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-181O13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-192N19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-058J02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-123I04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-241D17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-223J04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-131C01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-171J15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-089I02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-157F03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-341J09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-288D24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-275G11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-124I23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-212B16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-293N11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-147D17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-228A18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-141G23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-085H19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-068C19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-091M11
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-311M23.b	B6Ng01-311M23.g
ACC	GA103435	GA103436
length	955	1,121
definition	B6Ng01-311M23.b	B6Ng01-311M23.g
singlet/doublet	doublet	doublet
BLAST hit	unique	unique
Map location.	(3,130,554 - 3,131,506)	(3,313,517 - 3,314,644)
sequence	gaattctatgtgacattcaacaaagagctaatgtccatactcctcaaatt attcacaaaatagaaacagaagaaacattgctaactcattctatgaggtc atagtcaccctgatactcaaaccacatatagtctcaacatgggaagggaa tttcagtccaatttctcctttttaacctttccaagcaaattttcttatct tcctaataaggaagaacatgtctttcttgtatatttaaagtcatgaaatt aggcactgctataggacagaaggtaattgggtttgtaagaagtgatgtaa agtgccagtacctggcaaatacagaagtggatgctcacagtcatccattg gatggaacacagggcccccaatggtggagctagagaaagttcccaaggag ctgaaggggtttgcagccccataggaagaacaacaatacgaactaaccag tacccttagagctccttgtgactaaatcaccaatcaaagaatacccatgg tggaactggtgactctagctgcatatgtagcagaggatggcctactcatc aatgggaggagagaccctgggcctgtgaagtttctatgacccagtatagg ggaattccagggacaggaataggagtgagtggtttggggagcagggacaa gaggggggaattgtgatttgcagaggggaaactaagaaaggggataacat ttgaaatgtaataaagaaatatatctattttttaaaaaaagaagtgatgt agaatagagagaaacatgctcatagggaagccaaaagttagaccagaaaa ctactagaacattgaaccaaattcagcagtgtagccaggatgcagattta actgatgttaatctttctgatagtgtttgggtaagatattgtactcttgg aaatagggaactccattacactccctctttttacatatggtagatatgta tgctt	gaattcctactctacaggctccttctagacatttcttctggtttgaggaa caaaaggaggtgaagcaatcctgggcaaaactaagtttgttgggtgacct ggaagcttcattaagtgttctgtaaaatcctgaaatatagacccgagagt cacttcctgtgcagtcctcatgtatgaaaatccagaaacagtgcttcaag ttaggaaggaaaattcagccccatctaatgagaggaattcaggcaatttt tgtagaggtagtttaggctaaaattacaagaagtttctgtgaaattaatc cataattgattatagaggatgatatatttataattaggtaatacataata agcataaacataaatatgggtacggtgaagacatattttggttgtgaatt ttgattaaccacacccttctgatagacattgaagttgttcccagtttctg ctatgggagtttgagcgcattgtgaagaagcagatggaacatcatgtaca agtttggatgaagagggtgggaagccaagttgattttctgtgctttgttt tactctgtgatgcagtgtcatgaataaacaaaaagtaagcttgcagggaa tccacgagggtactgcatactgttgctaccttaggcacatccctgttgca tgggaccattgtgcaaagcatcccaagttttatagggaaatgggcacctg ggacgacaaccttgagttatttaaaatgacaagttcaatgatgtggaaag aaagagttacaagaaactggctcaagatgtcattctacccttaccggccc aatcattggaagccattttagtttctcggagtcttgttttctttctctat agaaagggtataaccagccaagtgtagtagcagaagcttttaatctcaga actgaggcagcagaaacaaggtgggtctctgtgagtttaagcaagcctgg tctacgtagtgagttccaggcttttcagtacacactgaaagctgttctat gagcaaaagaaaaacaaaaccccagagcacacttttggtattttgaagaa gtctttaagtttatgtcacttgagttcctctgaagctagtcatatatagc ctaccggcccagcctcgaatt
quality values	Open. Hide. 58 26 11 21 58 51 54 50 42 58 58 58 41 39 35 42 58 34 35 54 41 47 62 62 62 62 62 62 62 56 56 39 44 28 24 17 16 30 26 26 36 46 46 62 47 56 62 62 62 62 62 54 62 47 51 62 54 62 62 62 62 62 62 62 62 62 62 59 62 62 62 59 59 62 62 62 59 62 62 49 56 59 59 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 59 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 43 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 59 62 62 62 59 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 54 49 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 43 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 47 47 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 37 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 47 62 62 62 62 62 62 47 62 62 62 54 62 62 62 62 62 62 62 62 62 62 47 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 54 54 62 62 62 62 62 54 58 54 58 58 58 58 58 58 58 58 58 54 45 54 54 58 54 58 58 54 54 54 49 58 58 58 50 58 58 54 58 47 54 58 47 58 58 49 54 58 58 41 58 58 58 58 52 58 58 58 54 58 45 41 58 58 58 54 58 58 58 58 54 52 54 54 54 58 58 58 54 58 58 52 54 26 58 46 37 58 45 41 58 58 48 46 58 58 52 58 58 50 58 54 58 58 58 51 33 58 58 41 53 53 38 29 58 58 51 51 58 58 58 58 50 58 53 58 49 58 50 58 58 53 58 53 53 53 58 44 33 58 52 46 41 49 40 53 52 37 58 58 48 38 40 37 52 53 50 37 48 49 49 30 37 46 50 51 39 50 40 50 35 51 58 26 51 54 51 35 50 58 52 28 58 50 58 41 43 44 54 32 53 39 12 58 58 29 39 27 52 40 46 26 58 58 58 58 44 44 37 28 51 51 31 49 49 24 54 52 34 38 32 26 49 11 54 54 50 44 54 45 31 45 42 49 26 54 50 53 32 54 46 35 32 19 29 29 34 27 53 54 45 35 33 54 32 21 41 23 29 28 23 13 54 44 34 54 51 37 33 24 37 40 42 53 37 38 44 52 45 52 47 40 40 40 40 45 40 51 51 36 49 37 18 33 37 24 12 21 15 53 15 34 32 27 47 10 41 35 42 22 41 53 31 32 25 32 33 32 39 33 24 31 18 10 21 16 28 25 24 53 36 33 47 34 31 15 14 18 9 16 32 21 35 30 6 32 42 40 31 34 36 35 38 39 32 14 31 41 30 30 17 10 25 18 24 9 12 19 15 27 31 33 31 30 13 31 31 29 8 15 12 26 18 13 19 25 8 51 26 29 26 11 26 9 35 9 42 12 6 12 9 29 31 30 21 30 22 32 46 11 25 19 6 38 46 33 19 19 36 33 34 14 21 31 14 28 12 6 19 30 21 9 33 11 28 6 16 9 27 31 24 12 11 27 22 8 11 8 14 32 31 19 7 8 11 29 15 23 14 10 21 31 37 14 30 32 11 13 18 32 26 10 39 30 11 31 20 31 29 39 7 6 5 17 19 8 21 11 29 21 24 20 11 14 6 8 21 17 8 13 8 8 13 29	Open. Hide. 62 47 28 41 62 62 62 62 62 62 33 32 22 16 26 16 18 30 20 26 46 49 49 49 56 47 56 54 47 56 56 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 51 62 62 62 62 59 62 59 46 49 56 62 59 62 62 62 62 62 62 62 62 49 62 62 62 62 62 62 62 62 59 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 59 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 46 62 62 62 62 59 62 62 62 62 62 62 59 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 59 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 49 47 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 52 62 62 52 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 54 62 62 62 62 62 62 58 58 58 58 58 58 58 58 54 52 54 54 58 52 54 49 58 58 58 58 58 58 58 58 58 58 58 58 58 51 58 58 58 58 58 58 58 58 58 54 54 58 58 58 58 48 58 58 58 58 58 58 58 58 58 46 54 58 58 58 58 58 58 49 58 58 54 58 58 54 58 42 58 58 58 58 52 54 58 58 53 58 58 58 58 51 51 58 51 58 58 53 58 58 58 40 58 58 50 50 58 40 58 58 39 58 58 58 58 54 46 49 43 42 54 53 58 58 58 39 27 58 58 51 58 58 58 53 58 58 58 58 58 58 50 58 58 53 50 41 58 58 58 58 50 54 39 47 58 53 53 39 49 58 50 51 41 53 53 49 49 50 53 58 50 51 25 58 58 58 46 36 39 51 51 40 50 58 58 54 49 41 18 38 49 51 41 38 49 51 42 41 45 46 29 54 50 40 39 47 50 54 51 35 49 41 47 39 51 39 52 51 49 52 37 52 54 54 50 44 21 54 37 32 37 39 53 53 39 44 42 53 42 39 52 32 33 41 54 26 42 21 24 53 32 41 52 53 45 53 42 52 54 49 42 42 32 41 45 54 45 32 44 42 44 54 36 37 38 42 38 53 49 38 41 51 42 32 22 30 26 29 35 34 52 40 45 51 34 28 19 33 40 31 18 32 34 53 40 31 29 42 29 40 41 15 17 49 41 28 51 49 30 30 42 31 31 18 41 31 31 26 36 15 36 31 42 28 21 42 31 40 28 42 51 31 27 30 46 38 31 40 21 31 32 25 30 29 32 30 37 51 31 31 31 31 46 29 43 35 24 32 27 30 21 31 31 31 28 31 43 32 34 33 31 46 25 31 30 23 21 41 34 35 18 46 43 21 27 32 31 32 21 25 23 34 29 39 21 26 43 32 43 48 48 35 30 31 38 48 37 27 26 21 20 14 28 13 32 20 19 13 27 9 46 46 46 30 32 48 44 34 30 33 27 24 31 30 14 25 41 19 16 47 25 18 21 22 22 16 24 30 26 33 34 35 14 16 27 29 31 27 34 32 32 33 23 38 34 18 28 25 22 32 38 48 48 30 14 12 30 32 33 18 10 7 23 25 22 32 32 20 10 14 22 31 17 21 10 7 33 48 8 11 5 5 24 10 14 28 43 33 32 24 31 31 27 29 18 18 20 10 18 43 19 8 9 4 8 22 20 27 20 21 19 21 18 15 28 24 27 19 20 20 24 13 11 15 8 7 13 12 11 16 14 14 12 22 23 38 27 6 30 5 5 3 3 13 8 11 16 27 24 16 18 40 28 10 12 5 10 5 5 4 3 11 13 16 27 11 16 12 32 34 16 11 14 28 28 23 15 7 13 25 24 16 16 30 24 22 10 7 23 5 6 6 23 4 6 15 29 28 15 9 5 6 12 8 25 18 7 5 13 14 9 13 11 3 3 2 5 17 12 11 8 1 3 17 6 6 4 3 2 8 9 15 5 8 3 2 1 3 7 21 16 12 16 10 8 6 5 3 8 18 13 7 10 12 6 4 4 9 9 21 7 11 4 5 13 15 7 8 6 5 1 3 7 4 3 2 3 7 3 2 2 3 3 2

Alignment Information

BAC End 1

BAC End 2

seq1: chr13_3130554_3131506
seq2: B6Ng01-311M23.b_46_1000

seq1  GAATTCTATGTGACATTCAACAAAGAGCTAATGTCCATACTCCTCAAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGTGACATTCAACAAAGAGCTAATGTCCATACTCCTCAAATT  50

seq1  ATTCACAAAATAGAAACAGAAGAAACATTGCTAACTCATTCTATGAGGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACAAAATAGAAACAGAAGAAACATTGCTAACTCATTCTATGAGGTC  100

seq1  ATAGTCACCCTGATACTCAAACCACATATAGTCTCAACATGGGAAGGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCACCCTGATACTCAAACCACATATAGTCTCAACATGGGAAGGGAA  150

seq1  TTTCAGTCCAATTTCTCCTTTTTAACCTTTCCAAGCAAATTTTCTTATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGTCCAATTTCTCCTTTTTAACCTTTCCAAGCAAATTTTCTTATCT  200

seq1  TCCTAATAAGGAAGAACATGTCTTTCTTGTATATTTAAAGTCATGAAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAATAAGGAAGAACATGTCTTTCTTGTATATTTAAAGTCATGAAATT  250

seq1  AGGCACTGCTATAGGACAGAAGGTAATTGGGTTTGTAAGAAGTGATGTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACTGCTATAGGACAGAAGGTAATTGGGTTTGTAAGAAGTGATGTAA  300

seq1  AGTGCCAGTACCTGGCAAATACAGAAGTGGATGCTCACAGTCATCCATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCAGTACCTGGCAAATACAGAAGTGGATGCTCACAGTCATCCATTG  350

seq1  GATGGAACACAGGGCCCCCAATGGTGGAGCTAGAGAAAGTTCCCAAGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAACACAGGGCCCCCAATGGTGGAGCTAGAGAAAGTTCCCAAGGAG  400

seq1  CTGAAGGGGTTTGCAGCCCCATAGGAAGAACAACAATACGAACTAACCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGGGGTTTGCAGCCCCATAGGAAGAACAACAATACGAACTAACCAG  450

seq1  TACCCTTAGAGCTCCTTGTGACTAAATCACCAATCAAAGAATACCCATGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTTAGAGCTCCTTGTGACTAAATCACCAATCAAAGAATACCCATGG  500

seq1  TGGAACTGGTGACTCTAGCTGCATATGTAGCAGAGGATGGCCTACTCATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACTGGTGACTCTAGCTGCATATGTAGCAGAGGATGGCCTACTCATC  550

seq1  AATGGGAGGAGAGACCCTGGGCCTGTGAAGTTTCTATGACCCAGTATAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGAGGAGAGACCCTGGGCCTGTGAAGTTTCTATGACCCAGTATAGG  600

seq1  GGAATTCCAGGGACAGGAATAGGAGTGAGTGGTTTGGGGAGCAGGGACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTCCAGGGACAGGAATAGGAGTGAGTGGTTTGGGGAGCAGGGACAA  650

seq1  GAGGGGGGAATTGTGATTTGCAGAGGGGAAACTAAGAAAGGGGATAACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGGGAATTGTGATTTGCAGAGGGGAAACTAAGAAAGGGGATAACAT  700

seq1  TTGAAATGTAAATAAAGAAATATATCTATTTTTTAAAAAAAGAAGTGATG  750
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATGT-AATAAAGAAATATATCTATTTTTTAAAAAAAGAAGTGATG  749

seq1  TAGAATAGAGAGAAACATGCTCATAGGGAAGCCAAAAGTTAGACCAGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATAGAGAGAAACATGCTCATAGGGAAGCCAAAAGTTAGACCAGAAA  799

seq1  ACTACTAGAACAATGAA-CAAATTCAGCAGTGTAG-CAGGATGCAGAATT  848
      |||||||||||| |||| ||||||||||||||||| ||||||||||| ||
seq2  ACTACTAGAACATTGAACCAAATTCAGCAGTGTAGCCAGGATGCAGATTT  849

seq1  AACTGATGTTAATCTTTCTGATAGTGTTTGGGTAAGATATTGTACTCTT-  897
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AACTGATGTTAATCTTTCTGATAGTGTTTGGGTAAGATATTGTACTCTTG  899

seq1  GAAATAGGGAAACTCCATTTACACT-CCTCTTTTTAAATAT-GTAGATAT  945
      ||||||||| ||||||| ||||||| |||||||||| |||| ||||||||
seq2  GAAATAGGG-AACTCCA-TTACACTCCCTCTTTTTACATATGGTAGATAT  947

seq1  GTATGCTT  953
      ||||||||
seq2  GTATGCTT  955

seq1: chr13_3313517_3314644
seq2: B6Ng01-311M23.g_69_1189 (reverse)

seq1  AATTCTGGAGGCTGGGCCGGTAGCCTATATATGACTAGCTCTCAGAGG-A  49
      |||||  |||||||||||||||| |||||||||||||||| ||||||| |
seq2  AATTC--GAGGCTGGGCCGGTAGGCTATATATGACTAGCT-TCAGAGGAA  47

seq1  CTCCAGTGACCATAAAATTTAAGAACCTTCTTCAAAATA-CAAAAGTGGT  98
      ||| ||||| |||||| || ||||  ||||||||||||| ||||||| ||
seq2  CTCAAGTGA-CATAAACTTAAAGA--CTTCTTCAAAATACCAAAAGT-GT  93

seq1  GCTCTGGGGTTTTG-TTTTCTTTTGCTTCATTGACAGGCTTTCAGTGTGT  147
      |||||||||||||| ||||||||||| |||| ||   |||||||||||||
seq2  GCTCTGGGGTTTTGTTTTTCTTTTGC-TCATAGAACAGCTTTCAGTGTGT  142

seq1  AACCTGGAAAGCCTGGAACTCACTACGTAGACCAGGCTTGCCTTAAACTC  197
      |  ||| ||||||||||||||||||||||||||||||||| |||||||||
seq2  A--CTGAAAAGCCTGGAACTCACTACGTAGACCAGGCTTG-CTTAAACTC  189

seq1  ACAGAGACCCACC-TGTTTCTGCTGCCTCAGTTCTGAGATTAAAAGCTTC  246
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ACAGAGACCCACCTTGTTTCTGCTGCCTCAGTTCTGAGATTAAAAGCTTC  239

seq1  TGCTACTACACTTGGCTGGTTATACCCTTTCTATAGAGAAAGAAAACAAG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACTACACTTGGCTGGTTATACCCTTTCTATAGAGAAAGAAAACAAG  289

seq1  ACTCCGAGAAACTAAAATGGCTTCCAATGATTGGGCCGGTAAGGGTAGAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCGAGAAACTAAAATGGCTTCCAATGATTGGGCCGGTAAGGGTAGAA  339

seq1  TGACATCTTGAGCCAGTTTCTTGTAACTCTTTCTTTCCACATCATTGAAC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATCTTGAGCCAGTTTCTTGTAACTCTTTCTTTCCACATCATTGAAC  389

seq1  TTGTCATTTTAAATAACTCAAGGTTGTCGTCCCAGGTGCCCATTTCCCTA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCATTTTAAATAACTCAAGGTTGTCGTCCCAGGTGCCCATTTCCCTA  439

seq1  TAAAACTTGGGATGCTTTGCACAATGGTCCCATGCAACAGGGATGTGCCT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTTGGGATGCTTTGCACAATGGTCCCATGCAACAGGGATGTGCCT  489

seq1  AAGGTAGCAACAGTATGCAGTACCCTCGTGGATTCCCTGCAAGCTTACTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAGCAACAGTATGCAGTACCCTCGTGGATTCCCTGCAAGCTTACTT  539

seq1  TTTGTTTATTCATGACACTGCATCACAGAGTAAAACAAAGCACAGAAAAT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTATTCATGACACTGCATCACAGAGTAAAACAAAGCACAGAAAAT  589

seq1  CAACTTGGCTTCCCACCCTCTTCATCCAAACTTGTACATGATGTTCCATC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTGGCTTCCCACCCTCTTCATCCAAACTTGTACATGATGTTCCATC  639

seq1  TGCTTCTTCACAATGCGCTCAAACTCCCATAGCAGAAACTGGGAACAACT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCTTCACAATGCGCTCAAACTCCCATAGCAGAAACTGGGAACAACT  689

seq1  TCAATGTCTATCAGAAGGGTGTGGTTAATCAAAATTCACAACCAAAATAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGTCTATCAGAAGGGTGTGGTTAATCAAAATTCACAACCAAAATAT  739

seq1  GTCTTCACCGTACCCATATTTATGTTTATGCTTATTATGTATTACCTAAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCACCGTACCCATATTTATGTTTATGCTTATTATGTATTACCTAAT  789

seq1  TATAAATATATCATCCTCTATAATCAATTATGGATTAATTTCACAGAAAC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATATATCATCCTCTATAATCAATTATGGATTAATTTCACAGAAAC  839

seq1  TTCTTGTAATTTTAGCCTAAACTACCTCTACAAAAATTGCCTGAATTCCT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGTAATTTTAGCCTAAACTACCTCTACAAAAATTGCCTGAATTCCT  889

seq1  CTCATTAGATGGGGCTGAATTTTCCTTCCTAACTTGAAGCACTGTTTCTG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTAGATGGGGCTGAATTTTCCTTCCTAACTTGAAGCACTGTTTCTG  939

seq1  GATTTTCATACATGAGGACTGCACAGGAAGTGACTCTCGGGTCTATATTT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTCATACATGAGGACTGCACAGGAAGTGACTCTCGGGTCTATATTT  989

seq1  CAGGATTTTACAGAACACTTAATGAAGCTTCCAGGTCACCCAACAAACTT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATTTTACAGAACACTTAATGAAGCTTCCAGGTCACCCAACAAACTT  1039

seq1  AGTTTTGCCCAGGATTGCTTCACCTCCTTTTGTTCCTCAAACCAGAAGAA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTGCCCAGGATTGCTTCACCTCCTTTTGTTCCTCAAACCAGAAGAA  1089

seq1  ATGTCTAGAAGGAGCCTGTAGAGTAGGAATTC  1128
      ||||||||||||||||||||||||||||||||
seq2  ATGTCTAGAAGGAGCCTGTAGAGTAGGAATTC  1121

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Alignment Information