BAC Information

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BAC

Clone NameB6Ng01-312K15
Chromosome13 (Build37)
Map Location 78,147,625 - 78,299,648
singlet/doubletdoublet
Overlap gene1110033M05Rik, 1700013G10Rik
Upstream geneMctp1, Ankrd32, 2210408I21Rik, LOC631139, LOC675063, D13Mgi7
Downstream geneNr2f1, EG666856, LOC268676, LOC100042683, LOC622365, LOC100043052, EG666883
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-312K15.bB6Ng01-312K15.g
ACCGA104077GA104078
length1,082962
definitionB6Ng01-312K15.b B6Ng01-312K15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,298,549 - 78,299,648)(78,147,625 - 78,148,121)
sequence
gaattcctggctctgcctgtctcactctgcccttccagtgctgggattac
aagtgcatgccatcatgtctgactttcttttatgtgtgttctggtgatga
aactcaggctcttttggttgaaaggcaagcattttatcaatggagtcatc
ctcctatcactgaaagtgaatttttaacattcataagtagcatttggaag
atacataactacagtcctgtcagtcttggtttgcacacatcagtggggtt
agagaattggattagctgttaagcacgctgttgctcttgcagaggactga
ggttcttttcccacgacccacatggtagctaacaaccaccaccaattcaa
gctgtagtgaatataacaccctattctggcttttgtgggacgtgcagtgc
agaaataaattcaggcaaacacccatacacataaatgaaatgaaaataaa
ccttaaaaaattccactgaatattttgataaattaatatgaaaacctgca
aaaatagtgctcaaagaatggccacttaaaatatttattttcaaataatg
tgtaagcatgtgtctgggtatgtgcatgtgagtgcatgcttatgagccaa
taaaacaagcctttttttcatcacgttgctcttatttgggaaaaaaaggg
aaactaatataccagcctatattcttgttcacgtgaccttaatgcatgtt
ttttcccccctctgtagaaacacatataaatgcgatactgatgtagctgc
aaaaatcttggtcaaaaatattttggcagatgtatactgttttgaagttg
taacccacttttttccctagtatttgtttaaaaagtcaaaaatatggggc
tggagaaatggctctgtctttaaggagacctgattcaatctcagaatctg
ctccaggcagctcacatcacttgcactccaactctagcggacctaatgcc
tcctccccatcatggccactgaactacctattagaagtacaaaacaagtt
gaatagtgacgaacatggtaaagataaacatggagatgaactgattttcg
tactgtatttatcgtagctggattgagccccg
gaattccatgtcccttgttatggacttgagtacacacatacttgctcccg
tgggcagaggtgctaaaggaaaaacagagcaagtaagaacagaagctcct
agctactgcctcccactacaagatatgtccagatgttgtatgctaagaat
ggctgctgctctgtagtgtatgggtccatgacttaccccacccccaaaca
cacacacacacacacacacacacacactcccttgtatgccttcttaatga
gaaccatagaaacaaattgtaagctatcattcaacctagacaaatttaca
gttttacactcattttcatctccttaatatatcgtttgacctatcagatg
gttcatatctgtaacccttatacttgacttaaataggaggattacaagtt
caaggacagtctacattagtccttgagtaagaaagtgagctccaggccag
cctgggtcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaac
ttgagaatatcatctcaagtgaggtaactcagtcacaaaagaacacacac
gatatgcactcactgtaagtggatattagccatcccatatgcagtctcca
aatctggacattattgtggatgccagaaagtgcttgttgatagaagcctg
atacggctgtttcctgagaggctctgccagagcctgacaaatacagagga
ggacgcttacagccaaccattggactgagctcaggggttcctgatggagg
agttggaaaagggactgaaggagctgagggggtttgttgccccatggaaa
gagcaacagtgtcaacaggccagattccccagaactccaactgaaagaac
acatggagtgacccatggcgctggccacatatgtggcagaggatggcctt
gttggacatcagtgggaggagaggcccttgagcctgagggtgtccgatga
cccagtgtaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_78298549_78299648
seq2: B6Ng01-312K15.b_44_1125 (reverse)

seq1  CGGGGCTCAATCCCAGC-ACCAT-AATACA-TACCAAAAAATCAATTTCA  47
      ||||||||||| ||||| || || |||||| |||   |||||| | ||||
seq2  CGGGGCTCAAT-CCAGCTACGATAAATACAGTAC--GAAAATC-AGTTCA  46

seq1  ATTTACAATGTTTTAACTTTTACAATGTTTCTTAACTTTTTGAAACTTTG  97
        |  | ||||||  |  ||||| ||| ||| | ||| ||   ||| |||
seq2  --TCTCCATGTTT--ATCTTTACCATG-TTCGTCACTATT--CAAC-TTG  88

seq1  TTTTTGTTACTTTTAATTATGTAAGTTCAGTTGCCCATGATGGGGA-GAG  146
      ||||   ||||| ||| || || ||||||| || |||||||||||| |||
seq2  TTTT--GTACTTCTAA-TAGGT-AGTTCAG-TGGCCATGATGGGGAGGAG  133

seq1  GCATTAGGTCCCCTAGAGTTGGAGTTGCAAGTGATTGTGAGCTGCCTGGA  196
      ||||||||||| |||||||||||| ||||||||| |||||||||||||||
seq2  GCATTAGGTCCGCTAGAGTTGGAG-TGCAAGTGA-TGTGAGCTGCCTGGA  181

seq1  GCAGATTCTGAGATTGAATTCAGGTCTCCTTAAAGACAGAGCCATTTCTC  246
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GCAGATTCTGAGATTGAA-TCAGGTCTCCTTAAAGACAGAGCCATTTCTC  230

seq1  CAGCCCCCTATTTTTGACTTTTTAAAACAAATACTAGGGAAAAAAGTGGG  296
      ||||||| ||||||||||||||| ||||||||||||||||||||||||||
seq2  CAGCCCCATATTTTTGACTTTTT-AAACAAATACTAGGGAAAAAAGTGGG  279

seq1  TTACAACTTCAAAACAGTATACATCTGCCAAAATATTTTTGACCAAGATT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAACTTCAAAACAGTATACATCTGCCAAAATATTTTTGACCAAGATT  329

seq1  TTTGCAGCTACATCAGTATTGCATTTATATGTGTTTCTACAGAGGGGGGA  396
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TTTGCAGCTACATCAGTATCGCATTTATATGTGTTTCTACAGAGGGGGGA  379

seq1  AAAAACATGCATTAAGGTCACGTGAACAAGAATATAGGCTGGTATCTTAG  446
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AAAAACATGCATTAAGGTCACGTGAACAAGAATATAGGCTGGTATATTAG  429

seq1  TTTCCCTTTTTTTCCCAAATAAGAGCAACCTGATGAAAAAAAGGCTTGTT  496
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TTTCCCTTTTTTTCCCAAATAAGAGCAACGTGATGAAAAAAAGGCTTGTT  479

seq1  TTATTGGCTCATAAGCATGCACTCACATGCACATACCCAGACACATGCTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGGCTCATAAGCATGCACTCACATGCACATACCCAGACACATGCTT  529

seq1  ACACATTATTTGAAAATAAATATTTTAAGTGGCCATTCTTTGAGCACTAT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATTATTTGAAAATAAATATTTTAAGTGGCCATTCTTTGAGCACTAT  579

seq1  TTTTGCAGGTTTTCATATTAATTTATCAAAATATTCAGTGGAATTTTTTA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCAGGTTTTCATATTAATTTATCAAAATATTCAGTGGAATTTTTTA  629

seq1  AGGTTTATTTTCATTTCATTTATGTGTATGGGTGTTTGCCTGAATTTATT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTATTTTCATTTCATTTATGTGTATGGGTGTTTGCCTGAATTTATT  679

seq1  TCTGCACTGCACGTCCCACAAAAGCCAGAATAGGGTGTTATATTCACTAC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCACTGCACGTCCCACAAAAGCCAGAATAGGGTGTTATATTCACTAC  729

seq1  AGCTTGAATTACTGGTGGTTGTTAGCTACCATGTGGGTCCTGGGAAAAGA  796
      ||||||||||  ||||||||||||||||||||||||||| ||||||||||
seq2  AGCTTGAATTGGTGGTGGTTGTTAGCTACCATGTGGGTCGTGGGAAAAGA  779

seq1  ACCTCAGTCCTCTGCAAGAGCAACAGTGTGCTTAACAGCTAATCCAATTC  846
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ACCTCAGTCCTCTGCAAGAGCAACAGCGTGCTTAACAGCTAATCCAATTC  829

seq1  TCTAACCCCACTGATGTGTGCAAACCAAGACTGACATGACTGTAGTTATG  896
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TCTAACCCCACTGATGTGTGCAAACCAAGACTGACAGGACTGTAGTTATG  879

seq1  TATCTTCCAAATGCTACTTATGAATGTTAAAAATTCACTTTCAGTGATAG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTCCAAATGCTACTTATGAATGTTAAAAATTCACTTTCAGTGATAG  929

seq1  GAGGATGACTCCATTGATAAAATGCTTGCCTTTCAACCAAAAGAGCCTGA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATGACTCCATTGATAAAATGCTTGCCTTTCAACCAAAAGAGCCTGA  979

seq1  GTTTCATCACCAGAACACACATAAAAGAAAGTCAGACATGATGGCATGCA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCATCACCAGAACACACATAAAAGAAAGTCAGACATGATGGCATGCA  1029

seq1  CTTGTAATCCCAGCACTGGAAGGGCAGAGTGAGACAGGCAGAGCCATGGA  1096
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CTTGTAATCCCAGCACTGGAAGGGCAGAGTGAGACAGGCAGAGCCA-GGA  1078

seq1  ATTC  1100
      ||||
seq2  ATTC  1082

seq1: chr13_78147625_78148121
seq2: B6Ng01-312K15.g_68_564

seq1  GAATTCCATGTCCCTTGTTATGGACTTAAGTACACACATACTTGCTCCCA  50
      ||||||||||||||||||||||||||| ||||||||||||||||||||| 
seq2  GAATTCCATGTCCCTTGTTATGGACTTGAGTACACACATACTTGCTCCCG  50

seq1  TGGGCAGAGGTGCTAAAGGAAAAACAGAGCAAGTAAGAACAGAAGCTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAGAGGTGCTAAAGGAAAAACAGAGCAAGTAAGAACAGAAGCTCCT  100

seq1  AGCTACTGCCTCCCACTACAAGATATGTCCAGATGTTGTATGCTAGGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AGCTACTGCCTCCCACTACAAGATATGTCCAGATGTTGTATGCTAAGAAT  150

seq1  GGCTGCTGCTCTGTAGTGTATGGGTCCATGACTTACCCCACCCCCAAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCTGCTCTGTAGTGTATGGGTCCATGACTTACCCCACCCCCAAACA  200

seq1  CACACACACACACACACACACACACACTCCCTTGTATGCCTTCTTAATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACTCCCTTGTATGCCTTCTTAATGA  250

seq1  GAACCATAGAAACAAATTGTAAGCTATCATTCAGCCTAGACAAATTTACA  300
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GAACCATAGAAACAAATTGTAAGCTATCATTCAACCTAGACAAATTTACA  300

seq1  GTTTTACACTCATTTTCATCTCCTTAATATATCGTTTGACCTAGCAGATG  350
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GTTTTACACTCATTTTCATCTCCTTAATATATCGTTTGACCTATCAGATG  350

seq1  GTTCATATCTGTAACCCTTATACTTGACTTAGATAGGAGGATTACAAGTT  400
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GTTCATATCTGTAACCCTTATACTTGACTTAAATAGGAGGATTACAAGTT  400

seq1  CAAGGACAGTCTAGATTAGTCCTTGAGTAAGAAAGTGAGCTCCAGGCCAG  450
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CAAGGACAGTCTACATTAGTCCTTGAGTAAGAAAGTGAGCTCCAGGCCAG  450

seq1  CCTGGGTCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  497
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGTCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  497