BAC Information

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BAC

Clone NameB6Ng01-312N17
Chromosome13 (Build37)
Map Location 110,911,143 - 111,053,958
singlet/doubletdoublet
Overlap geneRab3c
Upstream genePde4d, LOC100040968, LOC100040577
Downstream geneEG432803, 9830130M13Rik, Plk2, LOC100040614, LOC668159, 4732495G21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-312N17.bB6Ng01-312N17.g
ACCGA104223GA104224
length1,1471,134
definitionB6Ng01-312N17.b B6Ng01-312N17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,911,143 - 110,912,308)(111,052,810 - 111,053,958)
sequence
gaattcaaggaactctaattaatatttctggttggaagctacacagcagg
tcagagtagtagtctggggaaaggctttctgccatctaaattctgtagtg
atggagttcaagtgatatatagacagaacaaaatatgaggacattctcta
taccctaaactttgagttgtggtgctgtgtgagagacaagcaccccagcc
gttccttagtgtcacatgagcaacatgcccacctaactgcttgctaccag
tactgagccctgagttgtcttgactcatcaagggatcacccgggaagata
tcagcgctccctgcagatttccaggggaaatcttttgaaattcttttgaa
cctacatcatgagaaccgcattatgagctaactaatttaagaaaattctc
tgagacacttatttcatctgtaacagagagaggcttcttctgcagaagtg
tgaaaaattaaagcaccatttagtcctttgtctagaatgctttaaaataa
aagttaaccgccccccccccaattttttttaatgaaagaatcaagcatat
caggttaatagttgtgttggagttacttaatagtaaggacacagacagcg
aaaagtgacttttgaagtccgactgacagaagcatctgtaacccaggttg
gaggattcctgcgttagcagagcatctagaaacccacaacagtgctgatc
tctcctttgcttcctcctgttctgcagttagcaaaatcagctaagtattg
tgctgccctgaaatccctgtgtcttattttattttacattttgcatgcct
taattaatccttccttcagaattttcagttatttttttctgaaggcctga
aaaacaaagaaagggaattatctgggctaacagtcttgtaagctgttagg
atatagagctgcacatgaggcggcgaaaagcactgtgatgtttaactaca
ttgctggtgtggaggacttcctagtgatccctctgggagacagaacgtct
agtccacacatgctgggatctgacacctaatgatggcctctcagctatct
ctgtaccctgcatgtaactggaagaaatatggcttaggacatgaaggcag
tagcctctcttaggatcagatcttacctatctgtccctcgagattaa

gaattcctctggatctacaaagtctaccagggctactgtgctcaccctga
atactgtggttcacttccaactcacagctatattaattatcccttgaatt
tattgctggtacttcccagataaatcttatgtccccccaactaaatcctc
acaattacatttaaaactctctatattcatgatgcctatattgcttcagt
tttagaatcaataagactttattaatagtggtagcttgtaccatcctttc
ttttaaggcattctgagaaacacactaccttgttgacctgcctccttact
gccataggctgaagaatatggtaagcaaataggccaagctgtcctgtgaa
atttacactctcatttctgactgtggcttggctgagtatcctgaatcctt
atctagaatttaagctggtccatgacaagacatcaaaggacctcgttaat
ggaggctacttgcagacctgctggaatagcatctcagggaacggtgaacg
ggctttatttgtaggaatggcagcgaccaaaccaaaaatcaagcagcaac
aaaagccacaatccagttaccttcctattaggatgttgaaaaccattcat
tgtttcaaaagaatcttctcttaaaaatgataggttgtgagccagtgcta
ggcgaggcgtgtatgttgcacagctaccaaggaaggtgatgctgcctgtt
tatgggccgggttaacacactagcaaacactccctacaagttttcatctt
tccctgcatgtgcccttgggattatatggttacatttgtattactctaaa
gaatgtgaagtccaatcagaattttgtcacctttaacttttgtgatacgc
acagaaattccctttgtgttacttgtatacaaataattgcactctcctgc
acacaatgagtatgtggagaaggtagtatgtcctctcattatctcattcc
ctgctttctgctgtgactcctcattctgtctctcgctacaggcgattaac
ataatctcatgtctgtgtcttagatgagccaaatgctattatgttgacaa
tcttacccactactgagcttctttagactttctttttggatattcaatgt
ctgttgctgccaaaatacctcatgccttgatact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_110911143_110912308
seq2: B6Ng01-312N17.b_47_1193

seq1  GAATTCAAGGAACTCTAATTAATATTTCTGGTTGGAAGCTACACAGCAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGAACTCTAATTAATATTTCTGGTTGGAAGCTACACAGCAGG  50

seq1  TCAGAGTAGTAGTCTGGGGAAAGGCTTTCTGCCATCTAAATTCTGTAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGTAGTAGTCTGGGGAAAGGCTTTCTGCCATCTAAATTCTGTAGTG  100

seq1  ATGGAGTTCAAGTGATATATAGACAGAACAAAATATGAGGACATTCTCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGTTCAAGTGATATATAGACAGAACAAAATATGAGGACATTCTCTA  150

seq1  TACCCTAAACTTTGAGTTGTGGTGCTGTGTGAGAGACAAGCACCCCAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTAAACTTTGAGTTGTGGTGCTGTGTGAGAGACAAGCACCCCAGCC  200

seq1  GTTCCTTAGTGTCACATGAGCAACATGCCCACCTAACTGCTTGCTACCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTTAGTGTCACATGAGCAACATGCCCACCTAACTGCTTGCTACCAG  250

seq1  TACTGAGCCCTGAGTTGTCTTGACTCATCAAGGGATCACCCGGGAAGATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAGCCCTGAGTTGTCTTGACTCATCAAGGGATCACCCGGGAAGATA  300

seq1  TCAGCGCTCCCTGCAGATTTCCAGGGGAAATCTTTTGAAATTCTTTTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCGCTCCCTGCAGATTTCCAGGGGAAATCTTTTGAAATTCTTTTGAA  350

seq1  CCTACATCATGAGAACCGCATTATGAGCTAACTAATTTAAGAAAATTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACATCATGAGAACCGCATTATGAGCTAACTAATTTAAGAAAATTCTC  400

seq1  TGAGACACTTATTTCATCTGTAACAGAGAGAGGCTTCTTCTGCAGAAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACACTTATTTCATCTGTAACAGAGAGAGGCTTCTTCTGCAGAAGTG  450

seq1  TGAAAAATTAAAGCACCATTTAGTCCTTTGTCTAGAATGCTTTAAAATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAATTAAAGCACCATTTAGTCCTTTGTCTAGAATGCTTTAAAATAA  500

seq1  AAGTTAACCGCCCCCCCCCCAATTTTTTTTAATGAAAGAATCAAGCATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAACCGCCCCCCCCCCAATTTTTTTTAATGAAAGAATCAAGCATAT  550

seq1  CAGGTTAATAGTTGTGTTGGAGTTACTTAATAGTAAGGACACAGACAGCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTAATAGTTGTGTTGGAGTTACTTAATAGTAAGGACACAGACAGCG  600

seq1  AAAAGTGACTTTTGAAGTCCGACTGACAGAAGCATCTGTAACCCAGGTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTGACTTTTGAAGTCCGACTGACAGAAGCATCTGTAACCCAGGTTG  650

seq1  GAGGATTCCTGCGTTAGCAGAGCATCTAGAAACCCACAACAGTGCTGATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATTCCTGCGTTAGCAGAGCATCTAGAAACCCACAACAGTGCTGATC  700

seq1  TCTCCTTTGCTTCCTCCTGTTCTGCAGTTAGCAAAATCAGCTAAGTATTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTTGCTTCCTCCTGTTCTGCAGTTAGCAAAATCAGCTAAGTATTG  750

seq1  TGCTGCCCTGAAATCCCTGTGTCTTATTTTATTTTACATTTTGCATGCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCCCTGAAATCCCTGTGTCTTATTTTATTTTACATTTTGCATGCCT  800

seq1  TAATTAATCCTTCCTTCAGAATTTTCAGTTATTTTTTTCTGAAGGCCTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAATCCTTCCTTCAGAATTTTCAGTTATTTTTTTCTGAAGGCCTGA  850

seq1  AAAACAAAGAAGGGGAATTATCTGGGCTAACAGTCTTGTAAGCTGTTAGG  900
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAGAAAGGGAATTATCTGGGCTAACAGTCTTGTAAGCTGTTAGG  900

seq1  ATATAGAGCTGCACATGAGGCGGCGAAAAGCACTGTGATGTTTAACTACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGAGCTGCACATGAGGCGGCGAAAAGCACTGTGATGTTTAACTACA  950

seq1  TTGCTGGTGTGGAGGACTTCCTAGTGATCCCTCTGGGAGAACAGAAGGTC  1000
      ||||||||||||||||||||||||||||||||||||||| |||||| |||
seq2  TTGCTGGTGTGGAGGACTTCCTAGTGATCCCTCTGGGAG-ACAGAACGTC  999

seq1  TAGTCCACACCATGCTGGGAATCTGACACCTAATTGATGGCCTCTCAAGC  1050
      ||||||||| ||||||||| ||||||||||||| |||||||||||| |||
seq2  TAGTCCACA-CATGCTGGG-ATCTGACACCTAA-TGATGGCCTCTC-AGC  1045

seq1  CTTATCTCTGTACCCTGCATGTAAACTTGGGAAGAAATTATGGCTTTAGG  1100
        |||||||||||||||||||| ||||  |||||||| |||||| |||||
seq2  --TATCTCTGTACCCTGCATGT-AACT--GGAAGAAA-TATGGC-TTAGG  1088

seq1  ACATGAGGGAAGGTTTAGCCTCTCTTAAGGATCAAATCCTACCTAATTCT  1150
      |||||| || ||   ||||||||||| ||||||| ||| ||||||  |||
seq2  ACATGAAGGCAG---TAGCCTCTCTT-AGGATCAGATCTTACCTA--TCT  1132

seq1  GTCCCTCCAAGATTAA  1166
      |||||| | |||||||
seq2  GTCCCT-CGAGATTAA  1147


seq1: chr13_111052810_111053958
seq2: B6Ng01-312N17.g_67_1200 (reverse)

seq1  AGTATCCA-GCATGAGGTATTTTGTGGCAGCAACAGACATGGAATAATCC  49
      |||||| | |||||||||||||  |||||||||||||||| |||| ||||
seq2  AGTATCAAGGCATGAGGTATTT--TGGCAGCAACAGACATTGAAT-ATCC  47

seq1  CAAAAGAAGGTCTAAAAGAAGCTCCAGTAGTGGGT-AGATTGTCAAAACA  98
       ||||||| |||| ||||||||| ||||||||||| |||||||||| | |
seq2  AAAAAGAAAGTCT-AAAGAAGCT-CAGTAGTGGGTAAGATTGTCAACATA  95

seq1  ATAATTAGCATTTGGGCTCATCTAAGACACCAAGACATTGAGGATTATGT  148
      |    |||||||| ||||||||||||||||  ||||| ||| ||||||||
seq2  A----TAGCATTT-GGCTCATCTAAGACAC--AGACA-TGA-GATTATGT  136

seq1  TAATCGCCTGTAGCGAGAGACAGAATTGAGGGAGTCACAGCAGAAAGCAG  198
      ||||||||||||||||||||||||| ||| ||||||||||||||||||||
seq2  TAATCGCCTGTAGCGAGAGACAGAA-TGA-GGAGTCACAGCAGAAAGCAG  184

seq1  GGAATGAGATAATGAGAGGACATACTACCCTTCTCCACATACTCATTGTG  248
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GGAATGAGATAATGAGAGGACATACTA-CCTTCTCCACATACTCATTGTG  233

seq1  TGCAGGAGAGTGCAATTATTTGTATACAAGTAACACAAAGGGAATTTCTG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGAGAGTGCAATTATTTGTATACAAGTAACACAAAGGGAATTTCTG  283

seq1  TGCGTATCACAAAAGTTAAAGGTGACAAAATTCTGATTGGACTTCACATT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTATCACAAAAGTTAAAGGTGACAAAATTCTGATTGGACTTCACATT  333

seq1  CTTTAGAGTAATACAAATGTAACCATATAATCCCAAGGGCACATGCAGGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGAGTAATACAAATGTAACCATATAATCCCAAGGGCACATGCAGGG  383

seq1  AAAGATGAAAACTTGTAGGGAGTGTTTGCTAGTGTGTTAACCCGGCCCAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATGAAAACTTGTAGGGAGTGTTTGCTAGTGTGTTAACCCGGCCCAT  433

seq1  AAACAGGCAGCATCACCTTCCTTGGTAGCTGTGCAACATACACGCCTCGC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGGCAGCATCACCTTCCTTGGTAGCTGTGCAACATACACGCCTCGC  483

seq1  CTAGCACTGGCTCACAACCTATCATTTTTAAGAGAAGATTCTTTTGAAAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCACTGGCTCACAACCTATCATTTTTAAGAGAAGATTCTTTTGAAAC  533

seq1  AATGAATGGTTTTCAACATCCTAATAGGAAGGTAACTGGATTGTGGCTTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATGGTTTTCAACATCCTAATAGGAAGGTAACTGGATTGTGGCTTT  583

seq1  TGTTGCTGCTTGATTTTTGGTTTGGTCGCTGCCATTCCTACAAATAAAGC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCTGCTTGATTTTTGGTTTGGTCGCTGCCATTCCTACAAATAAAGC  633

seq1  CCGTTCACCGTTCCCTGAGATGCTATTCCAGCAGGTCTGCAAGTAGCCTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTCACCGTTCCCTGAGATGCTATTCCAGCAGGTCTGCAAGTAGCCTC  683

seq1  CATTAACGAGGTCCTTTGATGTCTTGTCATGGACCAGCTTAAATTCTAGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAACGAGGTCCTTTGATGTCTTGTCATGGACCAGCTTAAATTCTAGA  733

seq1  TAAGGATTCAGGATACTCAGCCAAGCCACAGTCAGAAATGAGAGTGTAAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGATTCAGGATACTCAGCCAAGCCACAGTCAGAAATGAGAGTGTAAA  783

seq1  TTTCACAGGACAGCTTGGCCTATTTGCTTACCATATTCTTCAGCCTATGG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACAGGACAGCTTGGCCTATTTGCTTACCATATTCTTCAGCCTATGG  833

seq1  CAGTAAGGAGGCAGGTCAACAAGGTAGTGTGTTTCTCAGAATGCCTTAAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAGGAGGCAGGTCAACAAGGTAGTGTGTTTCTCAGAATGCCTTAAA  883

seq1  AGAAAGGATGGTACAAGCTACCACTATTAATAAAGTCTTATTGATTCTAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGATGGTACAAGCTACCACTATTAATAAAGTCTTATTGATTCTAA  933

seq1  AACTGAAGCAATATAGGCATCATGAATATAGAGAGTTTTAAATGTAATTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAAGCAATATAGGCATCATGAATATAGAGAGTTTTAAATGTAATTG  983

seq1  TGAGGATTTAGTTGGGGGGACATAAGATTTATCTGGGAAGTACCAGCAAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGATTTAGTTGGGGGGACATAAGATTTATCTGGGAAGTACCAGCAAT  1033

seq1  AAATTCAAGGGATAATTAATATAGCTGTGAGTTGGAAGTGAACCACAGTA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCAAGGGATAATTAATATAGCTGTGAGTTGGAAGTGAACCACAGTA  1083

seq1  TTCAGGGTGAGCACAGTAGCCCTGGTAGACTTTGTAGATCCAGAGGAATT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGGTGAGCACAGTAGCCCTGGTAGACTTTGTAGATCCAGAGGAATT  1133

seq1  C  1149
      |
seq2  C  1134


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