BAC Information

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BAC

Clone NameB6Ng01-313L11
Chromosome13 (Build37)
Map Location 16,361,556 - 16,362,687
singlet/doubletsinglet
Overlap genenone
Upstream geneEG625121, Gli3, LOC665157, Inhba, LOC625181
Downstream geneLOC665191, 5033411D12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-313L11.bB6Ng01-313L11.g
ACCGA104849GA104850
length1,2061,110
definitionB6Ng01-313L11.b B6Ng01-313L11.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaagacccatacctaaacatagcaaaggcaatatacagcaaacca
gtagccaacatcaaactaagtggagagaaacttcaagtaatcccattaaa
atcagggaccatacaagcctgcccattctctccttacctaatctatatat
tacttgaagtcctagccagagcaattagacaagaaaaggtcaaagtgtta
caaactgaaaaggaagaagtcaaaatatcactatttgtagatggtatgat
agtataattaagtgacccacaaaatccccacaaagaactccaaccctgat
aaataactttaacaaagtagccgaatataaaattaactcaaacaaatcag
tagcctttttctactcaaagtatagacaggctgaggaagaaattagggaa
acaacacacttcacaatagtcacaaataatataaaataccttgatgtgac
tctaaccaagcaagtgagagatctgtatgacaagaacttcaagtctctga
agaaagaaatagaagaagacctccaaagatggaaagatatcccatgctct
tgaatttgcaggattaatattccaaaagtggccatcttgaccaaagcaat
ctatagattcaaagcaatccccatcaaaattccaactcaattctttacag
agttagaaagagcaattttcaaattcatttagatcaacaaaaatccagag
tagtgaaaactattctcaaaaataaaagaacttctgagggaatcaccatg
cctgacctcaagttttattacagagcattagtgataaaaagtgcattgca
ttggtacagagacagacaggtagagcaatggaatttaattgaatacccag
aaataaacccatatacctatggtctcttgatctttgaaaaaggagctaaa
accatcctgtggaaaaaaaaagaacagcattttcaacaaatggtgctggg
ttcaactgggttgtcaacatgtagaagaatgcaattgattcattcttatc
tccctgtacaaagctcaaacccaagtggatcacgcactttccacataaaa
ccatatactgaatctaatacaaagaaacgtggaaagtctcaaacacattg
ggccacaggaagttcctgaaaagaaccatgcttatgctctagatcagatg
aacatgacctataaattgcaagctctgtaattgtccaaaggaaacgtgtt
ctaatg

gaattcactaactagaattcccaatggctaattgttttgtttttttttct
ttgttgattggtgtttctcataatgctctgctaacttctgttatttttcc
cagctatacaaaggtataattggcacaaaactgtttatatttttaataca
catatattttctgatatgaagctagctaaataacatgacttcatatactt
agcttgtatctgagactgtgtggtggaaatgcttaatttctactgttgat
gcacattaatttttatagttttctccctgtactttatttatagcatgtac
ttatcttgtgaatgggctggccagcacctgccatttccatccatcctcac
atgaactctggtaaccgttcttgtacaatttaaatgactttgaccttttt
gagatttgaaatgtaagtgaccctggtcatgttgaactagttttaactag
ttctggttcttgaaagagcatctatatacaaaatgtcctcaagtacttaa
aatataaaaaatacctggaggcttatcttttgcatattattttcatgtct
gttttatattcttcttactttttcactaaatattgtatagcaataggctc
tatctctctgcagaccatctttgggagattgactttcccttttttttcac
ctttttctcaagcacacggccacaataattctcagtcatatcttggaaga
agagcagctgattagggccactaaactagcaaaggtcatttagagtttca
cttaaaatgagcatgttcattcatggctgagattcactcagccttgtgta
atcaaactttgcactttatcaagttaataagtgaattaatcataacagaa
cagtggaggcaacaaagatatgtgtacatgccagtaaagggttctgctga
tcccatagaaaatcaggtccatgtcacaggacagccaaagtcatcacaaa
gaagaattcacagttgtgtttccagtttaattgctcgtggtaaaagaaac
aatagaagcaggtttgttacatagagaatgacttgtcctgggactttgtt
ctctataatcccagcatggtgaacatgatgctgactgactgttgctttaa
gaaagagcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_16361556_16362687
seq2: B6Ng01-313L11.g_68_1177 (reverse)

seq1  TTGCTCTTTCTCTTAAAATTCCACACAGTCAGTCAGCACTCAATGTTCAC  50
      ||||||||  |||||||    || |||||||||||||| || ||||||||
seq2  TTGCTCTT--TCTTAAA---GCA-ACAGTCAGTCAGCA-TC-ATGTTCAC  42

seq1  ATTGCTGGGAATTATTAGGAGAACAAAAGTTCCCAGGACAAAGTTCCATT  100
        ||||||| |||||   |||||||||   ||||||||| ||||  ||||
seq2  CATGCTGGG-ATTAT--AGAGAACAAA--GTCCCAGGAC-AAGT--CATT  84

seq1  CTCTATGTAAACAAAACCTTGCTTCTATTGTTTTCCTTTTAACCACGAGC  150
      |||||||| ||||||  | ||||||||||||||  ||||| |||||||||
seq2  CTCTATGT-AACAAA--CCTGCTTCTATTGTTT--CTTTT-ACCACGAGC  128

seq1  AATTAAACTGGAAACACAACTGTGAATTCTTCTTTGTGATGACTTTGGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAACTGGAAACACAACTGTGAATTCTTCTTTGTGATGACTTTGGCT  178

seq1  GTCCTGTGACATGGACCTGATTTTCTATGGGATCAGCAGAACCC-TTACT  249
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GTCCTGTGACATGGACCTGATTTTCTATGGGATCAGCAGAACCCTTTACT  228

seq1  GGCATGTACACATATCTTTGTTGCCTCCACTGTTCTGTTATGATTAATTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGTACACATATCTTTGTTGCCTCCACTGTTCTGTTATGATTAATTC  278

seq1  ACTTATTAACTTGATAAAGTGCAAAGTTTGATTACACAAGGCCTGAGTGA  349
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ACTTATTAACTTGATAAAGTGCAAAGTTTGATTACACAAGG-CTGAGTGA  327

seq1  ATCTCAGCCATGAATGAACATGCTCATTTTAAGTGAAACTCTAAATGACC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAGCCATGAATGAACATGCTCATTTTAAGTGAAACTCTAAATGACC  377

seq1  TTTGCTAGTTTAGTGGCCCTAATCAGCTGCTCTTCTTCCAAGATATGACT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTAGTTTAGTGGCCCTAATCAGCTGCTCTTCTTCCAAGATATGACT  427

seq1  GAGAATTATTGTGGCCGTGTGCTTGAGAAAAAGGTGAAAAAAAAGGGAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATTATTGTGGCCGTGTGCTTGAGAAAAAGGTGAAAAAAAAGGGAAA  477

seq1  GTCAATCTCCCAAAGATGGTCTGCAGAGAGATAGAGCCTATTGCTATACA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATCTCCCAAAGATGGTCTGCAGAGAGATAGAGCCTATTGCTATACA  527

seq1  ATATTTAGTGAAAAAGTAAGAAGAATATAAAACAGACATGAAAATAATAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTAGTGAAAAAGTAAGAAGAATATAAAACAGACATGAAAATAATAT  577

seq1  GCAAAAGATAAGCCTCCAGGTATTTTTTATATTTTAAGTACTTGAGGACA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAGATAAGCCTCCAGGTATTTTTTATATTTTAAGTACTTGAGGACA  627

seq1  TTTTGTATATAGATGCTCTTTCAAGAACCAGAACTAGTTAAAACTAGTTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTATATAGATGCTCTTTCAAGAACCAGAACTAGTTAAAACTAGTTC  677

seq1  AACATGACCAGGGTCACTTACATTTCAAATCTCAAAAAGGTCAAAGTCAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGACCAGGGTCACTTACATTTCAAATCTCAAAAAGGTCAAAGTCAT  727

seq1  TTAAATTGTACAAGAACGGTTACCAGAGTTCATGTGAGGATGGATGGAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTGTACAAGAACGGTTACCAGAGTTCATGTGAGGATGGATGGAAA  777

seq1  TGGCAGGTGCTGGCCAGCCCATTCACAAGATAAGTACATGCTATAAATAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGGTGCTGGCCAGCCCATTCACAAGATAAGTACATGCTATAAATAA  827

seq1  AGTACAGGGAGAAAACTATAAAAATTAATGTGCATCAACAGTAGAAATTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAGGGAGAAAACTATAAAAATTAATGTGCATCAACAGTAGAAATTA  877

seq1  AGCATTTCCACCACACAGTCTCAGATACAAGCTAAGTATATGAAGTCATG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTTCCACCACACAGTCTCAGATACAAGCTAAGTATATGAAGTCATG  927

seq1  TTATTTAGCTAGCTTCATATCAGAAAATATATGTGTATTAAAAATATAAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTAGCTAGCTTCATATCAGAAAATATATGTGTATTAAAAATATAAA  977

seq1  CAGTTTTGTGCCAATTATACCTTTGTATAGCTGGGAAAAATAACAGAAGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTTGTGCCAATTATACCTTTGTATAGCTGGGAAAAATAACAGAAGT  1027

seq1  TAGCAGAGCATTATGAGAAACACCAATCAACAAAGAAAAAAAAACAAAAC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGAGCATTATGAGAAACACCAATCAACAAAGAAAAAAAAACAAAAC  1077

seq1  AATTAGCCATTGGGAATTCTAGTTAGTGAATTC  1132
      |||||||||||||||||||||||||||||||||
seq2  AATTAGCCATTGGGAATTCTAGTTAGTGAATTC  1110


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