BAC Information

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BAC

Clone NameB6Ng01-313M04
Chromosome13 (Build37)
Map Location 41,103,223 - 41,104,370
singlet/doubletsinglet
Overlap genePak1ip1
Upstream geneOfcc1, LOC666894, LOC100039048, Tcfap2a, EG621629, EG637157, LOC100039105, Gcnt2
Downstream geneTmem14c, Mak, EG621771, Gcm2, LOC637277, Elovl2, LOC268650, BC024659, Nedd9, EG621976, EG328231, 9530008L14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-313M04.bB6Ng01-313M04.g
ACCGA104882GA104883
length1,2161,143
definitionB6Ng01-313M04.b B6Ng01-313M04.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgatctttccaaaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattgaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatagagtaatagtggcttcataaaatgagttgg
gtagagtaccttctacttctattttgtgaaatagtttgtgcagaattgga
attagatcttctttgaaggtctgatagaactctgcactaaacccatctgg
tcctgggctttttttggttgggagactattaataactgcttctatttctt
taggtgatatgggactgtttagatggtcaacttgatcctgattcaacttt
ggtacctggtatctgtccagaaatttgtccatttcgtccaggttttccag
ttttgttgagtatagccttttgtagaaggatctgatggtgttttggattt
cttcaggatctgttgttatgtctcccttttcatttctgattttgttaatt
aggattttgtccctgtgccctttagtaagtgtagctaagggtatatctat
cttgttgattttctcaaagaaccaactcctcgtttggttaattctttgaa
tagttcttgtttccacttggttgattcacccctgagtttgattatttcct
gccgtctactcctcttgggtgaatttgcttcctttttttctagggctttt
agatgtattgtcaagctgctagtatgtgctgtctcccgtttcttctggag
gcactcagcgctatggagtttccctcttagaaatgctttcatgtgtccca
taggtttgggtacgttgtggcttcatttcataaacctctaaaagtcttta
atttctcttctttatctccctgaaccaagtattcattgaagaagagtgta
tcagttcacgtgaatgtggctttcattattagttggttatgcgaatcagt
ctagtcatggctgatctgtataggatacctgaggcacatgatcacagtag
tatgtggatactctac
gaattctttacctaaaactttaaggtatgattctgtagtaccccaaggtg
ttggctttgtttttgttgaacatgggtcttgtgtgtgcttgtcagagcca
cttccaaactgtattcatcttcctgagcttccagtaattttgcctgtctt
gctttttcacaggcacagtaacttgcctgaaattccatggcaaccagcac
ttaatcagtggggcagaagacggccacatctgcatctgggatgtgaagag
atggaagtgcctgaagacctttaaagctcacaggtgaggccacatgctcc
tgttggcattctcgcagaaccagtcaagccgagggctaactgtcggtttc
cttttaggggacatgtcactttcctttctatccacccgtctggcaagttg
gctctgtctgttggcaccgataaaacattaaggtaagttacaatctttgc
tcatgtatcttttacttagtaataccaaaatactgtttccatgctgttcc
aacatactaccatttccgtgtagagccgaagttttcagccatttaagtta
ctgtagtagtaacaggagccaaatagaaagtcagtgaaccgtttcataac
gatggtgtcgaaacgatctgtactgaccaggcaaggcggtgaacgtgttt
aaccccagcactcaggggccagaggcagactgatctctgtgaatctgagg
ccagcctggactacgtaacaagttccaggcctagaccctgtcaaaaaaga
aaaaaaaagaaaaagaaaaaaagacagacagaaaaggcccagttattgta
agttgaggagagtgaccctgaagggaaatgttttgtagatgaaaatgtaa
tggataacaacacgtctaaagattcagtctgggctgagctttaatcatgc
ttgaagacaaatactgacaaattgctacaaagtaaatagtgaaattatcc
cgtggtggaggaggcctattagcttgatttttgccacttaatgacatgat
gatcatgctgtagcaacctcctgttttgcagaacattgtattctatagag
ggagatcagctttcataaaaaatataaggaaagttgagttttgcattgtt
aacaattactagctagactatgatgcatgcagaaccatttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_41103223_41104370
seq2: B6Ng01-313M04.g_66_1208

seq1  GAATTCTTTACCTAAAACTTTAAGGTATGATTCTGTAGTACCCCAAGGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTACCTAAAACTTTAAGGTATGATTCTGTAGTACCCCAAGGTG  50

seq1  TTGGCTTTGTTTTTGTTGAACATGGGTCTTGTGTGTGCTTGTCAGAGCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTTTGTTTTTGTTGAACATGGGTCTTGTGTGTGCTTGTCAGAGCCA  100

seq1  CTTCCAAACTGTATTCATCTTCCTGAGCTTCCAGTAATTTTGCCTGTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAAACTGTATTCATCTTCCTGAGCTTCCAGTAATTTTGCCTGTCTT  150

seq1  GCTTTTTCACAGGCACAGTAACTTGCCTGAAATTCCATGGCAACCAGCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTTCACAGGCACAGTAACTTGCCTGAAATTCCATGGCAACCAGCAC  200

seq1  TTAATCAGTGGGGCAGAAGACGGCCACATCTGCATCTGGGATGTGAAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCAGTGGGGCAGAAGACGGCCACATCTGCATCTGGGATGTGAAGAG  250

seq1  ATGGAAGTGCCTGAAGACCTTTAAAGCTCACAGGTGAGGCCACATGCTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAGTGCCTGAAGACCTTTAAAGCTCACAGGTGAGGCCACATGCTCC  300

seq1  TGTTGGCATTCTCGCAGAACCAGTCAAGCCGAGGGCTAACTGTCGGTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGCATTCTCGCAGAACCAGTCAAGCCGAGGGCTAACTGTCGGTTTC  350

seq1  CTTTTAGGGGACATGTCACTTTCCTTTCTATCCACCCGTCTGGCAAGTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAGGGGACATGTCACTTTCCTTTCTATCCACCCGTCTGGCAAGTTG  400

seq1  GCTCTGTCTGTTGGCACCGATAAAACATTAAGGTAAGTTACAATCTTTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGTCTGTTGGCACCGATAAAACATTAAGGTAAGTTACAATCTTTGC  450

seq1  TCATGTATCTTTTACTTAGTAATACCAAAATACTGTTTCCATGCTGTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTATCTTTTACTTAGTAATACCAAAATACTGTTTCCATGCTGTTCC  500

seq1  AACATACTACCATTTCCGTGTAGAGCCGAAGTTTTCAGCCATTTAAGTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATACTACCATTTCCGTGTAGAGCCGAAGTTTTCAGCCATTTAAGTTA  550

seq1  CTGTAGTAGTAACAGGAGCCAAATAGAAAGTCAGTGAACCGTTTCATAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGTAGTAACAGGAGCCAAATAGAAAGTCAGTGAACCGTTTCATAAC  600

seq1  GATGGTGTCGAAACGATCTGTACTGACCAGGCAAGGCGGTGAACGTGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTGTCGAAACGATCTGTACTGACCAGGCAAGGCGGTGAACGTGTTT  650

seq1  AACCCCAGCACTCAGGGGCCAGAGGCAGACTGATCTCTGTGAATCTGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCAGCACTCAGGGGCCAGAGGCAGACTGATCTCTGTGAATCTGAGG  700

seq1  CCAGCCTGGACTACGTAACAAGTTCCAGGCCTAGACCCTGTCAAAAAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTGGACTACGTAACAAGTTCCAGGCCTAGACCCTGTCAAAAAAGA  750

seq1  AAAAAAAAGAAAAAGAAAAAAAGACAGACAGAAAAGGCCCAGTTATTGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAGAAAAAGAAAAAAAGACAGACAGAAAAGGCCCAGTTATTGTA  800

seq1  AGTTGAGGAGAGTGACCCTGAAGGGAAATGTTTTGTAGATGAAAATGTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAGGAGAGTGACCCTGAAGGGAAATGTTTTGTAGATGAAAATGTAA  850

seq1  TGGATAACAACACGTCTAAAGATTCAGTCTGGGCTGAGCTTTAATCATGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATAACAACACGTCTAAAGATTCAGTCTGGGCTGAGCTTTAATCATGC  900

seq1  TTGAAGACAAATACTGACAAATTGCTACAAAGTAAATAGTGAAATTATCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGACAAATACTGACAAATTGCTACAAAGTAAATAGTGAAATTATCC  950

seq1  CGT-GTGGAGGAGGCCTATTAGCTTGATTTTTGCCACTTAATGACATGAT  999
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGTGGAGGAGGCCTATTAGCTTGATTTTTGCCACTTAATGACATGAT  1000

seq1  GATCATGCTGTAAGCAAACCTCCTGTTTTGCAGAACATGGAATCTTATAG  1049
      ||||||||||| ||| |||||||||||||||||||||| | ||  |||||
seq2  GATCATGCTGT-AGC-AACCTCCTGTTTTGCAGAACATTGTATTCTATAG  1048

seq1  AGGGAAGATCAGCTTTCATAAAAAATATAAAGGAAAG-TGAGTATTTTGC  1098
      |||| ||||||||||||||||||||||| |||||||| ||||  ||||||
seq2  AGGG-AGATCAGCTTTCATAAAAAATAT-AAGGAAAGTTGAG--TTTTGC  1094

seq1  ATGTTTAACAATAACTAGCTAGACTATGAATGCATGCAGACACATTTTTT  1148
      ||  |||||||| ||||||||||||||| |||||||||||  ||||||||
seq2  ATTGTTAACAATTACTAGCTAGACTATG-ATGCATGCAGAACCATTTTTT  1143