BAC Information

Click to search

BAC

Clone NameB6Ng01-314H23
Chromosome13 (Build37)
Map Location 63,487,790 - 63,588,879
singlet/doubletdoublet
Overlap geneFancc
Upstream geneLOC100041986, 8430426H19Rik, LOC100041455, 6720457D02Rik, EG665503, LOC100041493, LOC630857, EG630978, EG435366, LOC380850, LOC630951, Fbp2, Fbp1, LOC100042090, EG665524, 2010111I01Rik
Downstream genePtch1, C030010C08Rik, 0610007P08Rik, 9330134C04Rik, EG665575, Hsd17b3, Slc35d2, Zfp367, Habp4, Cdc14b, 1110018J18Rik, Ctsl, Ccrk, LOC665612, 1190003K10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-314H23.bB6Ng01-314H23.g
ACCGA105411GA105412
length1,1581,160
definitionB6Ng01-314H23.b B6Ng01-314H23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,587,723 - 63,588,879)(63,487,790 - 63,488,943)
sequence
gaattcacccctctgcacagacagcgttccctcccctcccccacccaccc
cccttcgctctcacagcccaccagttctggggcagccctgggtagcagtt
tgggcctttctttctacacacaattgactggagggcccaagtctgggcca
ttcagacaccacatggaaggctgttttttgtcagttctctcacggtttct
agatgcatcttttccagcagaggcaaaaaagcctgctgtctcccaggaca
gctgctaggcttttttctggggctggcgtgttccaaaactttaaggtttt
aacatttcaagtgtttttttttccccctgtgggttcctatggacattgag
ttcaagctaccttttttttttccttcccaaccccctaagctgaaaggttc
gattcttccatctatccatcaacaaatcgtattgaatgacggtgctcagt
gacccaggatgccaccggagacaaaacacaccgtacatattttctggtct
ccctggaaaattagtgcgaacactttcatcagagcagtggaggaaaatga
acacagagcagagaagatcggctttgtttttgttttgtttccctcggagg
aggtttcgcctccctcaaacaatgacgtttatattatcctttgcctgcaa
attaagcagatgagtagaattcccctgtgcatcgggctggtgttctgcac
acgtcccaggatggccacctctcctcctgggccgtggcaaatctggtcca
tttttgccctgacttgttaaaagtgacacttaaaatattttaattccaat
tcttgtcccatctgccccaccccctccccacctcccaccctcacccctac
ccttcagccccagctccgttcagacgtcactcctggtgtctgatctggga
ggaaaatgggttaggttgttcctacattttctcctgttaattttctcttt
tatgagggaggataggattcttggccttctggaaaggaagccaggagaaa
gagcgggcactgggggttcttcctgacacccccttcagttgaacacctcc
cacccaaggccctggccttaggctgagacacttagttcactccatctggg
aattggatgaaatgtttgtgccacctggggtggtcatggcaagtagctcg
tatgaggc
gaattcagacattgaccgtgggcgtctatatccacacagacacgtgcaca
tgcacctgcacacacatacctgcaagcacacacaccaggaagaaagccaa
cagctcagctaaaaacataccaaagatctgaatgaacttcacagaggaag
ataaacacatgatgttataaggtgaaagatgttctctaccatacatagtc
aggaaaatacagatcaaatgaagggctatggttgggtgtaggatgaaaag
gccttactcagaatcctgaagacacatagcaacaggcatgagcactcgtt
tgctatgggtcagtatgaaaaggtagaaggggacctttgggagtcagtgg
gaagttccttacacagctagcaaaacgtatctttactgcaaaatctagct
cttacattccttaatactgacccaaaggatgtgaacatgtgcctgcataa
atacctacatacaaacatttacagctatttaattcataactgccaaactt
ggaaacaaccatgatagtctttactaggagagcatatgaactatatatcc
aggcagtaagataatatgcagcacttgccagggaaccatgaagccatggg
gggaggggaaataagcacatctgagaaggtgccacactgagtgattctta
ctcacagctgaggagtggagaggtgagtggacagctcagggtgtctgtca
ggcatgcatatcagccattttccaaacgttcagaagagcctatgtgaact
cccttgtaaacaatgtcctctgcttgatgacatgatgctggttcatcaac
tgtaactgacatgccaatctgcagagcatgcctgaccatagcagagctct
gtatgtgttgggggtacaggtgggacacaagaacatagaaaatcttgtat
cttgtactcaatttttctgcaacctaaaactgggtttaaaactaaagcct
gatttaataatcctgagtataaattacacacaacaaaattaggccagcct
gtctgtgagaatgcccttatttctgtaaatagaatcctcaattgaacact
aggacctcaatcctttttccctcgttcctggcctccaacgtgctcccctc
cacccagttcagtttcactgagaagttttaacatagcatttttaggcaac
tctggggtta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_63587723_63588879
seq2: B6Ng01-314H23.b_44_1201 (reverse)

seq1  GCCTCATACGGAAGCTACTTTGCATAGACCACCC--GGT-GCACAAACAT  47
      ||||||||||  ||||||||  ||| ||||||||  ||| ||||||||| 
seq2  GCCTCATACG--AGCTACTTGCCAT-GACCACCCCAGGTGGCACAAACA-  46

seq1  TTTCATCCAAAATTCTCCAGGATGTGAAGTTGGAAATTAGTTGTCTTCAG  97
      ||||||||  ||||| ||||    || |||  ||| | || |||| ||||
seq2  TTTCATCC--AATTC-CCAG---ATGGAGT--GAACTAAG-TGTC-TCAG  86

seq1  CTTAAAGCCAGGGGCTTGGGTGGG-GGTGTTCAACTGA--GGGGTGTCAG  144
      | ||| ||||||| |||||||||| |||||||||||||  ||||||||||
seq2  CCTAAGGCCAGGGCCTTGGGTGGGAGGTGTTCAACTGAAGGGGGTGTCAG  136

seq1  GGAGAA-CCCCAGTGCCCGCTTCTTCT-CTGGCTTCCTTTCCAGAAGG-C  191
      | |||| ||||||||||||||  |||| |||||||||||||||||||| |
seq2  GAAGAACCCCCAGTGCCCGCTCTTTCTCCTGGCTTCCTTTCCAGAAGGCC  186

seq1  AAG-ATCCTATC--TCCTCATAAAAGAGAAAATTTAACAGGAGAAAATGT  238
      ||| ||||||||   ||||||||||||||||| |||||||||||||||||
seq2  AAGAATCCTATCCTCCCTCATAAAAGAGAAAA-TTAACAGGAGAAAATGT  235

seq1  A-GAACAACCTAA-CCATTTTTCTCCCAGATCAGACA-CAGGAGTGACGT  285
      | ||||||||||| ||||||| ||||||||||||||| ||||||||||||
seq2  AGGAACAACCTAACCCATTTTCCTCCCAGATCAGACACCAGGAGTGACGT  285

seq1  CTGAACGGAGCTGGGGCTG-AGGGTAGGGGTGAGGGTGGGAGGTGGGGAG  334
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CTGAACGGAGCTGGGGCTGAAGGGTAGGGGTGAGGGTGGGAGGTGGGGAG  335

seq1  GGGGTGGGGCAGATGGGACAAGAATTGGAATTAAAATATTTTAAGTGTCA  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGGGGCAGATGGGACAAGAATTGGAATTAAAATATTTTAAGTGTCA  385

seq1  CTTTTAACAAGTCAGGGCAAAAATGGACCAGATTTGCCACGGCCCAGGAG  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAACAAGTCAGGGCAAAAATGGACCAGATTTGCCACGGCCCAGGAG  435

seq1  GAGAGGTGGCCATCCTGGGACGTGTGCAGAACACCAGCCCGATGCACAGG  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGTGGCCATCCTGGGACGTGTGCAGAACACCAGCCCGATGCACAGG  485

seq1  GGAATTCTACTCATCTGCTTAATTTGCAGGCAAAGGATAATATAAACGTC  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTCTACTCATCTGCTTAATTTGCAGGCAAAGGATAATATAAACGTC  535

seq1  ATTGTTTGAGGGAGGCGAAACCTCCTCCGAGGGAAACAAAACAAAAACAA  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTGAGGGAGGCGAAACCTCCTCCGAGGGAAACAAAACAAAAACAA  585

seq1  AGCCGATCTTCTCTGCTCTGTGTTCATTTTCCTCCACTGCTCTGATGAAA  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCGATCTTCTCTGCTCTGTGTTCATTTTCCTCCACTGCTCTGATGAAA  635

seq1  GTGTTCGCACTAATTTTCCAGGGAGACCAGAAAATATGTACGGTGTGTTT  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCGCACTAATTTTCCAGGGAGACCAGAAAATATGTACGGTGTGTTT  685

seq1  TGTCTCCGGTGGCATCCTGGGTCACTGAGCACCGTCATTCAATACGATTT  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCCGGTGGCATCCTGGGTCACTGAGCACCGTCATTCAATACGATTT  735

seq1  GTTGATGGATAGATGGAAGAATCGAACCTTTCAGCTTAGGGGGTTGGGAA  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATGGATAGATGGAAGAATCGAACCTTTCAGCTTAGGGGGTTGGGAA  785

seq1  GGAAAAAAAAAAGGTAGCTTGAACTCAATGTCCATAGGAACCCACAGGGG  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAAAAAAAGGTAGCTTGAACTCAATGTCCATAGGAACCCACAGGGG  835

seq1  GAAAAAAAAACACTTGAAATGTTAAAACCTTAAAGTTTTGGAACACGCCA  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAAAACACTTGAAATGTTAAAACCTTAAAGTTTTGGAACACGCCA  885

seq1  GCCCCAGAAAAAAGCCTAGCAGCTGTCCTGGGAGACAGCAGGCTTTTTTG  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAGAAAAAAGCCTAGCAGCTGTCCTGGGAGACAGCAGGCTTTTTTG  935

seq1  CCTCTGCTGGAAAAGATGCATCTAGAAACCGTGAGAGAACTGACAAAAAA  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCTGGAAAAGATGCATCTAGAAACCGTGAGAGAACTGACAAAAAA  985

seq1  CAGCCTTCCATGTGGTGTCTGAATGGCCCAGACTTGGGCCCTCCAGTCAA  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTTCCATGTGGTGTCTGAATGGCCCAGACTTGGGCCCTCCAGTCAA  1035

seq1  TTGTGTGTAGAAAGAAAGGCCCAAACTGCTACCCAGGGCTGCCCCAGAAC  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTGTAGAAAGAAAGGCCCAAACTGCTACCCAGGGCTGCCCCAGAAC  1085

seq1  TGGTGGGCTGTGAGAGCGAAGGGGGGTGGGTGGGGGAGGGGAGGGAACGC  1134
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGGCTGTGAGAGCGAAGGGGGGTGGGTGGGGGAGGGGAGGGAACGC  1135

seq1  TGTCTGTGCAGAGGGGTGAATTC  1157
      |||||||||||||||||||||||
seq2  TGTCTGTGCAGAGGGGTGAATTC  1158

seq1: chr13_63487790_63488943
seq2: B6Ng01-314H23.g_62_1221

seq1  GAATTCAGACATTGACCGTGGGCGTCTATATCCACACAGACACGTGCACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGACATTGACCGTGGGCGTCTATATCCACACAGACACGTGCACA  50

seq1  TGCACCTGCACACACATACCTGCAAGCACACACACCAGGAAGAAAGCCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACCTGCACACACATACCTGCAAGCACACACACCAGGAAGAAAGCCAA  100

seq1  CAGCTCAGCTAAAAACATACCAAAGATCTGAATGAACTTCACAGAGGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCAGCTAAAAACATACCAAAGATCTGAATGAACTTCACAGAGGAAG  150

seq1  ATAAACACATGATGTTATAAGGTGAAAGATGTTCTCTACCATACATAGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACACATGATGTTATAAGGTGAAAGATGTTCTCTACCATACATAGTC  200

seq1  AGGAAAATACAGATCAAATGAAGGGCTATGGTTGGGTGTAGGATGAAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAATACAGATCAAATGAAGGGCTATGGTTGGGTGTAGGATGAAAAG  250

seq1  GCCTTACTCAGAATCCTGAAGACACATAGCAACAGGCATGAGCACTCGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTACTCAGAATCCTGAAGACACATAGCAACAGGCATGAGCACTCGTT  300

seq1  TGCTATGGGTCAGTATGAAAAGGTAGAAGGGGACCTTTGGGAGTCAGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATGGGTCAGTATGAAAAGGTAGAAGGGGACCTTTGGGAGTCAGTGG  350

seq1  GAAGTTCCTTACACAGCTAGCAAAACGTATCTTTACTGCAAAATCTAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTCCTTACACAGCTAGCAAAACGTATCTTTACTGCAAAATCTAGCT  400

seq1  CTTACATTCCTTAATACTGACCCAAAGGATGTGAACATGTGCCTGCATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACATTCCTTAATACTGACCCAAAGGATGTGAACATGTGCCTGCATAA  450

seq1  ATACCTACATACAAACATTTACAGCTATTTAATTCATAACTGCCAAACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTACATACAAACATTTACAGCTATTTAATTCATAACTGCCAAACTT  500

seq1  GGAAACAACCATGATAGTCTTTACTAGGAGAGCATATGAACTATATATCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACAACCATGATAGTCTTTACTAGGAGAGCATATGAACTATATATCC  550

seq1  AGGCAGTAAGATAATATGCAGCACTTGCCAGGGAACCATGAAGCCATGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGTAAGATAATATGCAGCACTTGCCAGGGAACCATGAAGCCATGGG  600

seq1  GGGAGGGGAAATAAGCACATCTGAGAAGGTGCCACACTGAGTGATTCTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGGGAAATAAGCACATCTGAGAAGGTGCCACACTGAGTGATTCTTA  650

seq1  CTCACAGCTGAGGAGTGGAGAGGTGAGTGGACAGCTCAGGGTGTCTGTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAGCTGAGGAGTGGAGAGGTGAGTGGACAGCTCAGGGTGTCTGTCA  700

seq1  GGCATGCATATCAGCCATTTTCCAAACGTTCAGAAGAGCCTATGTGAACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGCATATCAGCCATTTTCCAAACGTTCAGAAGAGCCTATGTGAACT  750

seq1  CCCTTGTAAACAATGTCCTCTGCTTGATGACATGATGCTGGTTCATCAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGTAAACAATGTCCTCTGCTTGATGACATGATGCTGGTTCATCAAC  800

seq1  TGTAACTGACATGCCAATCTGCAGAGCATGCCTGACCATAGCAGAGGCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TGTAACTGACATGCCAATCTGCAGAGCATGCCTGACCATAGCAGA-GCTC  849

seq1  TGTATGTGTT-GGGGTACAGGTGGGACACAAGAACATAGAAAATCTTTGT  899
      |||||||||| |||||||||||||||||||||||||||||||||| ||||
seq2  TGTATGTGTTGGGGGTACAGGTGGGACACAAGAACATAGAAAATC-TTGT  898

seq1  ATCTTGTACTCAATTTTTCTGCAAACCTAAAACTGGTTTAAAAACTAAAG  949
      |||||||||||||||||||||| ||||||||||||| || ||||||||||
seq2  ATCTTGTACTCAATTTTTCTGC-AACCTAAAACTGGGTTTAAAACTAAAG  947

seq1  CCTGATTTTATAATCCTGAGTATAAATTACAACACAACAAAATTAGGCCA  999
      |||||||| ||||||||||||||||||||| |||||||||||||||||||
seq2  CCTGATTTAATAATCCTGAGTATAAATTAC-ACACAACAAAATTAGGCCA  996

seq1  GCCTGTCTGTTGAGAATGCCCCTATTTCTGTAAATAGAAT-CTCAATTGA  1048
      ||||||||| ||||||||||| |||||||||||||||||| |||||||||
seq2  GCCTGTCTG-TGAGAATGCCCTTATTTCTGTAAATAGAATCCTCAATTGA  1045

seq1  ACACCTAGGA-CTC-ATCCTTTTT-CCTCG-TCCTG--CCCCAACGTG--  1090
      ||| |||||| ||| ||||||||| ||||| |||||  | ||||||||  
seq2  ACA-CTAGGACCTCAATCCTTTTTCCCTCGTTCCTGGCCTCCAACGTGCT  1094

seq1  CCCCTCCACCAGTCAGT---GTTTCACTGAAGGATGTTTTTAACATA-CA  1136
      ||||||||||   ||||   ||||||||||  || | |||||||||| ||
seq2  CCCCTCCACC---CAGTTCAGTTTCACTGA--GAAG-TTTTAACATAGCA  1138

seq1  TTTTAAG----CACTGGGGTTA  1154
      |||| ||    | |||||||||
seq2  TTTTTAGGCAACTCTGGGGTTA  1160