BAC Information

Click to search

BAC

Clone NameB6Ng01-314O12
Chromosome13 (Build37)
Map Location 90,953,801 - 91,076,918
singlet/doubletdoublet
Overlap geneEG435376, Rps23, Atg10
Upstream geneXrcc4, Tmem167, LOC100043170, LOC624190
Downstream geneLOC100042959, Ssbp2, LOC666889, Acot12, Zcchc9, Ckmt2, Rasgrf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-314O12.bB6Ng01-314O12.g
ACCGA105695GA105696
length1,1001,021
definitionB6Ng01-314O12.b B6Ng01-314O12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,953,801 - 90,954,900)(91,075,898 - 91,076,918)
sequence
gaattcagaaagaaagaaaacagaactctaaaggacttggaagaaaccac
atgtgattatttccccttcagttacagcgagtttccacagttcgcaactc
tgctaaatgcctgaactaaaactgagcaaggggcagagagtaaagttgtt
aaaaagaccaaaaaaaaaaaaaaaaatcaagccaaagctgtccagacagg
gctagcctgaacagattctcacattgcccacactgagttatgaggtactt
acttaatttctgacttttaaagttcagctaaaatgatgtcattgcaattc
acatttaaaataaaggaataagcttgctctcacaatccccaagcagcaga
atgtgtagagctctggttctctcccacagtgaagggctgggatagctctt
cctttttcaacctccttggcccagatctagcttaccaaaccacggctgtg
gccacagtgttttatgatctacttaagcctcaaacccacacctcttcatg
actctcatgcttcagcccagagaacaaccacagcactggctatgtggacc
aaggggctatgtggttactcagcccttgccttcaaaggactgctaagtgc
agggtcgtgtttgcttagaagtacttttcccaggcagctccagcaggttt
gggatatacagggctcttcctgggtagttttctgcatgtgtacagagacc
caaggacctaaagacgttccataacatggacactatcacaggggaatcag
cagggaatcagtgtattcctggcagacacgtcaagaagaggcaaatagat
gtacctcatcagaaaagatcactgccttggagaaaagataacatttagtg
aagttacactgaaacacagtgcttttgacttgcatgggtcactacccaga
atcttctattgcttcattttatgtgtagatccacatgtcagatgtcttca
gtatttattttactatcatcattcatttatatatttgtaaaaaatggcac
ccacatgttctaaactaagcataagaatcattgttgagtgtgtactacat
gtgaatgtatactagaatatgcatgtttcctaggtggcactgtccctgta

gaattcacagaaaatcaataggtaagaaacaccatcaagactcatggtac
tctactctgattttaaaagtgtaaatcttttcatctgactctaaaagcca
ggctaaaataagaaatattctttctaataataatggtaaacacatcgatt
tttgtctgtgtgctaggtgttctggatttagatatatgaacacaatgggc
ttttataacatcccagtaacttttacttaattttcagagaagaatgctaa
agcacagaggagttaagcatctctatcacagtcatgcagcgagtttgggg
tgggactgggatttgaatataggcagcaccaggatttttactactggctc
aacgaatgttataaattcaaatggaaatttggggccatcgtgaggaatca
aaggtcccagttctgttttccaatttaactcccgtggtgagagatcttca
gaaaacctcggatcacaaatccaactcacaccacctcgtggctggcatcc
aggcaagccccagggaaatgcctcatttctcttccttttggccactcaca
ggcttgccatcagaaagtatgatgggacaattgtattacatatactttac
ttgtttcctagaaatgtcaactatatcacatcatggctgagcctcgtggg
gccagtggttggtctgaatttacctctgagctatgctaaagcaacatcac
aatcggagtgacttgttaacaagcaaggtaaagagaaaagcctgggtttc
attctttgttgttagaaagatgatggtgtctctcttacccttagctacac
ctcgggtctggggtcagtttgcatcgtctttattaggctgggccctacct
tgttcacttgtgttccaacagcgacctatccagttatctgggaagggttt
tgttttgttacagagagcatccccacacctgctggagtggggtggtttta
ttttatggccactattcttgaataatatactgcttattatttattattta
tttatatattattattattat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_90953801_90954900
seq2: B6Ng01-314O12.b_45_1144

seq1  GAATTCAGAAAGAAAGAAAACAGAACTCTAAAGGACTTGGAAGAAACCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAAGAAAGAAAACAGAACTCTAAAGGACTTGGAAGAAACCAC  50

seq1  ATGTGATTATTTCCCCTTCAGTTACAGCGAGTTTCCACAGTTCGCAACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGATTATTTCCCCTTCAGTTACAGCGAGTTTCCACAGTTCGCAACTC  100

seq1  TGCTAAATGCCTGAACTAAAACTGAGCAAGGGGCAGAGAGTAAAGTTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAATGCCTGAACTAAAACTGAGCAAGGGGCAGAGAGTAAAGTTGTT  150

seq1  AAAAAGACCAAAAAAAAAAAAAAAAATCAAGCCAAAGCTGTCCAGACAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGACCAAAAAAAAAAAAAAAAATCAAGCCAAAGCTGTCCAGACAGG  200

seq1  GCTAGCCTGAACAGATTCTCACATTGCCCACACTGAGTTATGAGGTACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGCCTGAACAGATTCTCACATTGCCCACACTGAGTTATGAGGTACTT  250

seq1  ACTTAATTTCTGACTTTTAAAGTTCAGCTAAAATGATGTCATTGCAATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAATTTCTGACTTTTAAAGTTCAGCTAAAATGATGTCATTGCAATTC  300

seq1  ACATTTAAAATAAAGGAATAAGCTTGCTCTCACAATCCCCAAGCAGCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTAAAATAAAGGAATAAGCTTGCTCTCACAATCCCCAAGCAGCAGA  350

seq1  ATGTGTAGAGCTCTGGTTCTCTCCCACAGTGAAGGGCTGGGATAGCTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTAGAGCTCTGGTTCTCTCCCACAGTGAAGGGCTGGGATAGCTCTT  400

seq1  CCTTTTTCAACCTCCTTGGCCCAGATCTAGCTTACCAAACCACGGCTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTTCAACCTCCTTGGCCCAGATCTAGCTTACCAAACCACGGCTGTG  450

seq1  GCCACAGTGTTTTATGATCTACTTAAGCCTCAAACCCACACCTCTTCATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACAGTGTTTTATGATCTACTTAAGCCTCAAACCCACACCTCTTCATG  500

seq1  ACTCTCATGCTTCAGCCCAGAGAACAACCACAGCACTGGCTATGTGGACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCATGCTTCAGCCCAGAGAACAACCACAGCACTGGCTATGTGGACC  550

seq1  AAGGGGCTATGTGGTTACTCAGCCCTTGCCTTCAAAGGACTGCTAAGTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGCTATGTGGTTACTCAGCCCTTGCCTTCAAAGGACTGCTAAGTGC  600

seq1  AGGGTCGTGTTTGCTTAGAAGTACTTTTCCCAGGCAGCTCCAGCAGGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCGTGTTTGCTTAGAAGTACTTTTCCCAGGCAGCTCCAGCAGGTTT  650

seq1  GGGATATACAGGGCTCTTCCTGGGTAGTTTTCTGCATGTGTACAGAGACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATATACAGGGCTCTTCCTGGGTAGTTTTCTGCATGTGTACAGAGACC  700

seq1  CAAGGACCTAAAGACGTTCCATAACATGGACACTATCACAGGGGAATCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGACCTAAAGACGTTCCATAACATGGACACTATCACAGGGGAATCAG  750

seq1  CAGGGAATCAGTGTATTCCTGGCAGACACGTCAAGAAGAGGCAAATAGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAATCAGTGTATTCCTGGCAGACACGTCAAGAAGAGGCAAATAGAT  800

seq1  GTACCTCATCAGAAAAGATCACTGCCTTGGAGAAAAGATAACATTTAGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTCATCAGAAAAGATCACTGCCTTGGAGAAAAGATAACATTTAGTG  850

seq1  AAGTTACACTGAAACACAGTGCTTTTGACTTGCATGGGTCACTACCCAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTACACTGAAACACAGTGCTTTTGACTTGCATGGGTCACTACCCAGA  900

seq1  ATCTTCTATTGCTTCATTTTATGTGTAGATCCACATGTCAGATGTCTTCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCTATTGCTTCATTTTATGTGTAGATCCACATGTCAGATGTCTTCA  950

seq1  GTATTTATTTTTACTATCATCATTCATTTATATATTTGTAAAAAATGGCA  1000
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTA-TTTTACTATCATCATTCATTTATATATTTGTAAAAAATGGCA  999

seq1  -CCACATGTTCCTAAACTAAGCAT-AGAATCATTTGTTGAGTGTGTACTA  1048
       ||||||||| ||||||||||||| ||||||| |||||||||||||||||
seq2  CCCACATGTT-CTAAACTAAGCATAAGAATCA-TTGTTGAGTGTGTACTA  1047

seq1  CATGTGAATGTATACTAG-ATATGCAATGTTT-CTA-GTTGCACTGTCCC  1095
      |||||||||||||||||| |||||| |||||| ||| || ||||||| ||
seq2  CATGTGAATGTATACTAGAATATGC-ATGTTTCCTAGGTGGCACTGT-CC  1095

seq1  CTGTA  1100
      |||||
seq2  CTGTA  1100

seq1: chr13_91075898_91076918
seq2: B6Ng01-314O12.g_65_1085 (reverse)

seq1  ATAATAATAATAATAAATAAATAAATAAATAAATA--AAGCAGTATTATT  48
      ||||||||||||||| |||||||||| ||||||||  |||||||| ||||
seq2  ATAATAATAATAATATATAAATAAAT-AATAAATAATAAGCAGTA-TATT  48

seq1  ATTTCAAGAATAGTGGCCATAAAATAAAACCA-CCCACTCCAGCAGGTGT  97
      | |||||||||||||||||||||||||||||| |||||||||||||||||
seq2  A-TTCAAGAATAGTGGCCATAAAATAAAACCACCCCACTCCAGCAGGTGT  97

seq1  GGGGATGCTCTCTGTAACAAAACAAAACCCTTCCCAGATAACTGGATAGG  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGATGCTCTCTGTAACAAAACAAAACCCTTCCCAGATAACTGGATAGG  147

seq1  TCGCTGTTGGAACACAAGTGAACAAGGTAGGGCCCAGCCTAATAAAGACG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCTGTTGGAACACAAGTGAACAAGGTAGGGCCCAGCCTAATAAAGACG  197

seq1  ATGCAAACTGACCCCAGACCCGAGGTGTAGCTAAGGGTAAGAGAGACACC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAACTGACCCCAGACCCGAGGTGTAGCTAAGGGTAAGAGAGACACC  247

seq1  ATCATCTTTCTAACAACAAAGAATGAAACCCAGGCTTTTCTCTTTACCTT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCTTTCTAACAACAAAGAATGAAACCCAGGCTTTTCTCTTTACCTT  297

seq1  GCTTGTTAACAAGTCACTCCGATTGTGATGTTGCTTTAGCATAGCTCAGA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTTAACAAGTCACTCCGATTGTGATGTTGCTTTAGCATAGCTCAGA  347

seq1  GGTAAATTCAGACCAACCACTGGCCCCACGAGGCTCAGCCATGATGTGAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAATTCAGACCAACCACTGGCCCCACGAGGCTCAGCCATGATGTGAT  397

seq1  ATAGTTGACATTTCTAGGAAACAAGTAAAGTATATGTAATACAATTGTCC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTGACATTTCTAGGAAACAAGTAAAGTATATGTAATACAATTGTCC  447

seq1  CATCATACTTTCTGATGGCAAGCCTGTGAGTGGCCAAAAGGAAGAGAAAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATACTTTCTGATGGCAAGCCTGTGAGTGGCCAAAAGGAAGAGAAAT  497

seq1  GAGGCATTTCCCTGGGGCTTGCCTGGATGCCAGCCACGAGGTGGTGTGAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCATTTCCCTGGGGCTTGCCTGGATGCCAGCCACGAGGTGGTGTGAG  547

seq1  TTGGATTTGTGATCCGAGGTTTTCTGAAGATCTCTCACCACGGGAGTTAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATTTGTGATCCGAGGTTTTCTGAAGATCTCTCACCACGGGAGTTAA  597

seq1  ATTGGAAAACAGAACTGGGACCTTTGATTCCTCACGATGGCCCCAAATTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAAAACAGAACTGGGACCTTTGATTCCTCACGATGGCCCCAAATTT  647

seq1  CCATTTGAATTTATAACATTCGTTGAGCCAGTAGTAAAAATCCTGGTGCT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTGAATTTATAACATTCGTTGAGCCAGTAGTAAAAATCCTGGTGCT  697

seq1  GCCTATATTCAAATCCCAGTCCCACCCCAAACTCGCTGCATGACTGTGAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTATATTCAAATCCCAGTCCCACCCCAAACTCGCTGCATGACTGTGAT  747

seq1  AGAGATGCTTAACTCCTCTGTGCTTTAGCATTCTTCTCTGAAAATTAAGT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGCTTAACTCCTCTGTGCTTTAGCATTCTTCTCTGAAAATTAAGT  797

seq1  AAAAGTTACTGGGATGTTATAAAAGCCCATTGTGTTCATATATCTAAATC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTACTGGGATGTTATAAAAGCCCATTGTGTTCATATATCTAAATC  847

seq1  CAGAACACCTAGCACACAGACAAAAATCGATGTGTTTACCATTATTATTA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACACCTAGCACACAGACAAAAATCGATGTGTTTACCATTATTATTA  897

seq1  GAAAGAATATTTCTTATTTTAGCCTGGCTTTTAGAGTCAGATGAAAAGAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAATATTTCTTATTTTAGCCTGGCTTTTAGAGTCAGATGAAAAGAT  947

seq1  TTACACTTTTAAAATCAGAGTAGAGTACCATGAGTCTTGATGGTGTTTCT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACTTTTAAAATCAGAGTAGAGTACCATGAGTCTTGATGGTGTTTCT  997

seq1  TACCTATTGATTTTCTGTGAATTC  1021
      ||||||||||||||||||||||||
seq2  TACCTATTGATTTTCTGTGAATTC  1021