BAC Information

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BAC

Clone NameB6Ng01-315H19
Chromosome13 (Build37)
Map Location 114,882,966 - 114,995,774
singlet/doubletdoublet
Overlap geneArl15, A430090L17Rik
Upstream geneGzma, 1700084D21Rik, Gzmk, Esm1, BC067074, LOC100040888, Snag1, Hspb3, EG632832, LOC622701, LOC100040927
Downstream geneNdufs4, LOC100040958, Fst, 4930467J12Rik, Mocs2, Itga2, LOC100040975, Itga1, Pelo
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-315H19.bB6Ng01-315H19.g
ACCGA106126GA106127
length4381,071
definitionB6Ng01-315H19.b B6Ng01-315H19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,882,966 - 114,883,409)(114,994,692 - 114,995,774)
sequence
tctatccagaactgcaagaagagagagactgtgggcttggaatggggtct
tggaaacctcaaagcccaccctcgtaacacacttccccccaaaaggtcac
aaccctaatcctttaaaagtttaaatcctccccaccccactcccccaccc
ccaccccagatgattaaatcaagtctatgagcttactggggctatcttca
ttcaaaccaccacagcctgcttcttgtccagttatttttccaggtgaccc
aacagtggtacaaacagtctatatgtggtagagggaacgtctagatctta
ctttggacgttttcagatcattgcaaacatgagcagcacagaagcattcg
tgtcatctctagcagccaggaactctaaagcaaagcaaagccctgcactg
tgcgctgctgctgtcgtctgatactggcatctggcaca
gaattctgtgtttccgagatcataaaaaaatgaatactgctctgcggttg
atgtcatttgagatgtttctatgaatttcactgggacatggatgatgctc
agggaactctacaagagacataatgccagagtcctccagcagcctagagt
cggtgggaaaggacagtccaaacctgagctcatcttcaagttgtagcaag
gagctgggccctggatggcagatgcaccatacacacaccagaggaggaac
tgctatagaaaggtcagttgagttggccaacatgttaagcatcaaggcca
gagccagcatttaaatgacatccaggtcatgtctagaactgctgacctct
tgaattttttttaaaattaagaataatttcaactagcaaaagtttagaaa
agagttcttttctattgtatatgaaccaaagccatattttcccaattctc
agtggtactgtctacatgtatacatgtataaaacatgtatgatagtctgc
acagtcatctatatgtttgaacctgtatatataattccaaaatgtcctag
gaaacaatttgtgaaagtgtggctccaaacaagagccaaccttctaatgc
ctcctcattccccaatattccaaagtttataaatgtcatgctttaattat
tattattattattattattattattattattattattattattattttgg
tttttcgagacagggtttctctgtgtggccctggctgtcctggcactcac
tttgtagaccaggctggcctcgaactcagaaatccgcctgcctctgcctc
cctgagtgctgggattaaaggcgtgcgccaccacgcccggcttgctttaa
ctatttttaatctctgatcacaacaaaagggaacatattgaaatcattgc
ataaggtgtcaacaacaatatttcctgtggaaaattaaaaaaaaaaggca
ttcacatgttgagaagcaatgggccaaacctttcagttctccattacctg
caaatttcataatttgatttaattatagatggattagatctagagtgtct
gcatgtgttaactccagcccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_114882966_114883409
seq2: B6Ng01-315H19.b_45_488

seq1  GAATTCTCTATCCAGAACTGCAAGAAGAGAGAGACTGTGGGCTTGGAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTATCCAGAACTGCAAGAAGAGAGAGACTGTGGGCTTGGAATG  50

seq1  GGGTCTTGGAAACCTCAAAGCCCACCCTCGTAACACACTTCCCCCCAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTTGGAAACCTCAAAGCCCACCCTCGTAACACACTTCCCCCCAAAA  100

seq1  GGTCACAACCCTAATCCTTTAAAAGTTTAAATCCTCCCCACCCCACTCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACAACCCTAATCCTTTAAAAGTTTAAATCCTCCCCACCCCACTCCC  150

seq1  CCACCCCCACCCCAGATGATTAAATCAAGTCTATGAGCTTACTGGGGCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCCCACCCCAGATGATTAAATCAAGTCTATGAGCTTACTGGGGCTA  200

seq1  TCTTCATTCAAACCACCACAGCCTGCTTCTTGTCCAGTTATTTTTCCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCATTCAAACCACCACAGCCTGCTTCTTGTCCAGTTATTTTTCCAGG  250

seq1  TGACCCAACAGTGGTACAAACAGTCTATATGTGGTAGAGGGAACGTCTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCAACAGTGGTACAAACAGTCTATATGTGGTAGAGGGAACGTCTAG  300

seq1  ATCTTACTTTGGACGTTTTCAGATCATTGCAAACATGAGCAGCACAGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTACTTTGGACGTTTTCAGATCATTGCAAACATGAGCAGCACAGAAG  350

seq1  CATTCGTGTCATCTCTAGCAGCCAGGAACTCTAAAGCAAAGCAAAGCCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCGTGTCATCTCTAGCAGCCAGGAACTCTAAAGCAAAGCAAAGCCCT  400

seq1  GCACTGTGCGCTGCTGCTGTCGTCTGATACTGGCATCTGGCACA  444
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGTGCGCTGCTGCTGTCGTCTGATACTGGCATCTGGCACA  444

seq1: chr13_114994692_114995774
seq2: B6Ng01-315H19.g_65_1135 (reverse)

seq1  -GGGGTGGAGTTAAAACACCATGCAGACACACAAGGGAATCTTATTCATC  49
       ||| ||||||||| |   ||||||||||| | ||   |||| || ||||
seq2  GGGGCTGGAGTTAACA---CATGCAGACACTCTAG---ATCTAATCCATC  44

seq1  TATAAATAAAAATCAAATTATGAAATTTGCAGGTAAATGGAGAAACTGAA  99
      ||||| |  ||||||||||||||||||||||||| ||||||| |||||||
seq2  TATAATT--AAATCAAATTATGAAATTTGCAGGT-AATGGAG-AACTGAA  90

seq1  A-GTTTGGCCCATTGCTTCTCAACATTGTGAATTGCCTTTTTTTTTTTTA  148
      | ||||||||||||||||||||||| |||||| ||||  |||||||||||
seq2  AGGTTTGGCCCATTGCTTCTCAACA-TGTGAA-TGCC--TTTTTTTTTTA  136

seq1  ATTTTCCACAGGAAAATATTGTTTGTTGACACCTTTATGCAATGATTTCA  198
      |||||||||||| |||||||| ||||||||||| ||||||||||||||||
seq2  ATTTTCCACAGG-AAATATTG-TTGTTGACACC-TTATGCAATGATTTCA  183

seq1  ATATTGTTCCC-TTTGTTGTGATCAGAGATTAAAAATAGTTAAAGCAAGC  247
      ||| ||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ATA-TGTTCCCTTTTGTTGTGATCAGAGATTAAAAATAGTTAAAGCAAGC  232

seq1  CGGGCGTGGTGGCGCACGCCTTTAATCCCAGCACTCAGGGAGGCAGAGGC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGCGTGGTGGCGCACGCCTTTAATCCCAGCACTCAGGGAGGCAGAGGC  282

seq1  AGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTGCCAG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTGCCAG  332

seq1  GACAGCCAGGGCCACACAGAGAAACCCTGTCTCGAAAAACCAA---AATA  394
      |||||||||||||||||||||||||||||||||||||||||||   ||||
seq2  GACAGCCAGGGCCACACAGAGAAACCCTGTCTCGAAAAACCAAAATAATA  382

seq1  ATAATAATAATAATAATAATAATAATAATAATAATAATAATAATTAAAGC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAATAATAATAATAATAATAATAATAATAATAATAATAATTAAAGC  432

seq1  ATGACATTTATAAACTTTGGAATATTGGGGAATGAGGAGGCATTAGAAGG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACATTTATAAACTTTGGAATATTGGGGAATGAGGAGGCATTAGAAGG  482

seq1  TTGGCTCTTGTTTGGAGCCACACTTTCACAAATTGTTTCCTAGGACATTT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTCTTGTTTGGAGCCACACTTTCACAAATTGTTTCCTAGGACATTT  532

seq1  TGGAATTATATATACAGGTTCAAACATATAGATGACTGTGCAGACTATCA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATTATATATACAGGTTCAAACATATAGATGACTGTGCAGACTATCA  582

seq1  TACATGTTTTATACATGTATACATGTAGACAGTACCACTGAGAATTGGGA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGTTTTATACATGTATACATGTAGACAGTACCACTGAGAATTGGGA  632

seq1  AAATATGGCTTTGGTTCATATACAATAGAAAAGAACTCTTTTCTAAACTT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATGGCTTTGGTTCATATACAATAGAAAAGAACTCTTTTCTAAACTT  682

seq1  TTGCTAGTTGAAATTATTCTTAATTTTAAAAAAAATTCAAGAGGTCAGCA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTAGTTGAAATTATTCTTAATTTTAAAAAAAATTCAAGAGGTCAGCA  732

seq1  GTTCTAGACATGACCTGGATGTCATTTAAATGCTGGCTCTGGCCTTGATG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTAGACATGACCTGGATGTCATTTAAATGCTGGCTCTGGCCTTGATG  782

seq1  CTTAACATGTTGGCCAACTCAACTGACCTTTCTATAGCAGTTCCTCCTCT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACATGTTGGCCAACTCAACTGACCTTTCTATAGCAGTTCCTCCTCT  832

seq1  GGTGTGTGTATGGTGCATCTGCCATCCAGGGCCCAGCTCCTTGCTACAAC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGTGTATGGTGCATCTGCCATCCAGGGCCCAGCTCCTTGCTACAAC  882

seq1  TTGAAGATGAGCTCAGGTTTGGACTGTCCTTTCCCACCGACTCTAGGCTG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGATGAGCTCAGGTTTGGACTGTCCTTTCCCACCGACTCTAGGCTG  932

seq1  CTGGAGGACTCTGGCATTATGTCTCTTGTAGAGTTCCCTGAGCATCATCC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGGACTCTGGCATTATGTCTCTTGTAGAGTTCCCTGAGCATCATCC  982

seq1  ATGTCCCAGTGAAATTCATAGAAACATCTCAAATGACATCAACCGCAGAG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCCAGTGAAATTCATAGAAACATCTCAAATGACATCAACCGCAGAG  1032

seq1  CAGTATTCATTTTTTTATGATCTCGGAAACACAGAATTC  1083
      |||||||||||||||||||||||||||||||||||||||
seq2  CAGTATTCATTTTTTTATGATCTCGGAAACACAGAATTC  1071