BAC Information

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BAC

Clone NameB6Ng01-315H20
Chromosome13 (Build37)
Map Location 68,215,408 - 68,381,996
singlet/doubletdoublet
Overlap geneLOC677603, LOC100042124, LOC666222, AA414992, LOC666238
Upstream geneZfp759, Rsl1, LOC674699, Zfp455, Zfp458, Zfp457, A230042K10Rik, E130120F12Rik, Zfp456, 2810487A22Rik, Zfp459, C330011K17Rik, LOC666098, 9630025I21Rik, Zfp817, Zfp87, Zfp748, A530054K11Rik, LOC328277, 3830402I07Rik, EG666137, Zfp85-rs1, LOC674597, Zfp273, BC048507, LOC666185, LOC100042687, LOC100042692, LOC674779
Downstream geneEG666245, EG666272, LOC100042223, Mtrr, LOC100042233, Fastkd3, 1700001L19Rik, Adcy2, LOC666205
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-315H20.bB6Ng01-315H20.g
ACCGA106128GA106129
length777982
definitionB6Ng01-315H20.b B6Ng01-315H20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,215,408 - 68,216,182)(68,381,012 - 68,381,996)
sequence
gaattccagcctcagaaagcagaggcaagtggtgtggtccctagaataag
ctggctaaaaagattaggtcatatcagtgagccagaccgtgatttttttt
attgtatattttctttattttcatttcaaatgttacccactttcccagtt
tccccctatcccatcctccctccccctgattctatgagggtgttcctcca
cccaaccaccaccaacaaccactccaccttatatttccctatattgcggc
atctatccagccttcataggaccaaggacctctcctccattgattcctga
caaggccatcctctgctacatatgcagctggagccaagtgtactcctcaa
gactcccgagaatcaaataaccctattaacagagctaaacaacgaattct
caactgaaggatattgaatggcctagaagtacctaaagaaaagttcagca
tccttagtcatcagggtaatgcaaatcaaactgaaagacccgaaaggagc
tcctcactcaggcctcaggacaatagtggacctccaagaactcaggagag
accaagcttgatgtaaacaacatgaggctttattcagggaaatcccgagc
tctgaggatgactcatatcccacacaggggtagaggagacaaccaggaga
ggaaaggggtcccagtttttataggccctcaggggggaaaagagaagggg
ggagtatgggatttccagatctgaacaatgtctatactcaacaaatgtgt
gtgggggggggtataaagtaaagaatc
gaattccaactgtaattccaagaatgatgtcccaccctcctgaccttgtg
tgacttcccggattgaattctggtcctcctgttttagccactgtgctatt
tccccagccctcctcctcctttcacaggactctcattccttccataattt
gtagcccctatatccagaaccttttatgttctacttctcaaaggattgaa
ttctgatattctgctgtttggaacctctgagactgtcttggtgacatggg
atgaggggtgtgatgagggtagacttggttcctgtacagacattcaacta
accccttccctgaagccccactcttgcttcctgatcctttcagtgaccct
gtggccacttgctactttgtcttccacttagtgaattgaatgtaagcagt
tacaggcctctaagctgattatcaccccgctcccagtttgttctttcact
tccaagatatgtgggtgccccgtagtcagatcctctctttcttttttaaa
ataaaaaaaattatgatgtcattgtattacttctcattcatttccttcct
gcaatccaccccatgtcctttctggccagtctttttcatcttcccccact
ttctctctacatggtttccccattttttgacaattacatacacacacaca
cacacacacacatatacatatatatatatatacatatatatacacattaa
catattagtacaacccagtgagactatttagtgttgatttgtatgtgtat
gatttcagagctgcccacatgacattagataacaattaggaaggtcatct
ctggagagactaatttctctcttttctctgacttaaggaggaatcagatt
tataagaactgaagccagtgtcaatacagatatctgaccagacaacaagc
ctgaagccatcactgagacatcaacacatgacctcggacagggaatcaca
caaagatgagaacttggttaacgttgctttca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_68215408_68216182
seq2: B6Ng01-315H20.b_49_825

seq1  GAATTCCAGCCTCAGAAAGCAGAGGCAAGTGGTGTGGTCCCTAGAATAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCCTCAGAAAGCAGAGGCAAGTGGTGTGGTCCCTAGAATAAG  50

seq1  CTGGCTAAAAAGATTAGGTCATATCAGTGAGCCAGACCGTGATTTTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTAAAAAGATTAGGTCATATCAGTGAGCCAGACCGTGATTTTTTTT  100

seq1  ATTGTATATTTTCTTTATTTTCATTTCAAATGTTACCCACTTTCCCAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTATATTTTCTTTATTTTCATTTCAAATGTTACCCACTTTCCCAGTT  150

seq1  TCCCCCTATCCCATCCTCCCTCCCCCTGATTCTATGAGGGTGTTCCTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCTATCCCATCCTCCCTCCCCCTGATTCTATGAGGGTGTTCCTCCA  200

seq1  CCCAACCACCACCAACAACCACTCCACCTTATATTTCCCTATATTGCGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACCACCACCAACAACCACTCCACCTTATATTTCCCTATATTGCGGC  250

seq1  ATCTATCCAGCCTTCATAGGACCAAGGACCTCTCCTCCATTGATTCCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATCCAGCCTTCATAGGACCAAGGACCTCTCCTCCATTGATTCCTGA  300

seq1  CAAGGCCATCCTCTGCTACATATGCAGCTGGAGCCAAGTGTACTCCTCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCCATCCTCTGCTACATATGCAGCTGGAGCCAAGTGTACTCCTCAA  350

seq1  GACTCCCGAGAATCAAATAACCCTATTAACAGAGCTAAACAACGAATTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCCGAGAATCAAATAACCCTATTAACAGAGCTAAACAACGAATTCT  400

seq1  CAACTGAAGGATATTGAATGGCCTAGAAGTACCTAAAGAAAAGTTCAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGAAGGATATTGAATGGCCTAGAAGTACCTAAAGAAAAGTTCAGCA  450

seq1  TCCTTAGTCATCAGGGTAATGCAAATCAAACTGAAAGACCCGAAAGGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTAGTCATCAGGGTAATGCAAATCAAACTGAAAGACCCGAAAGGAGC  500

seq1  TCCTCACTCAGGCCTCAGGACAATAGTGGACCTCCAAGAACTCAGGAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCACTCAGGCCTCAGGACAATAGTGGACCTCCAAGAACTCAGGAGAG  550

seq1  ACCAAGCTTGATGTAAACAACATGAGGCTTTATTCAGGGAAATCCCGAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGCTTGATGTAAACAACATGAGGCTTTATTCAGGGAAATCCCGAGC  600

seq1  TCTGAGGATGACTCATATCCCACACAGGGGTAGAGGAGACAACCAGGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGGATGACTCATATCCCACACAGGGGTAGAGGAGACAACCAGGAGA  650

seq1  GGAAAGGGGTCCCAGTTTTTATAGGCCCTCAGGGGGGAAAAGAGAAGGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGGGTCCCAGTTTTTATAGGCCCTCAGGGGGGAAAAGAGAAGGGG  700

seq1  GGAGTATGGGATTTCCAGATCTGAACAATGTCTATACTCAACAAATGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTATGGGATTTCCAGATCTGAACAATGTCTATACTCAACAAATGTGT  750

seq1  GT-GGGGGGGGTAT-AAGGAAAGAATC  775
      || ||||||||||| ||| ||||||||
seq2  GTGGGGGGGGGTATAAAGTAAAGAATC  777

seq1: chr13_68381012_68381996
seq2: B6Ng01-315H20.g_67_1048 (reverse)

seq1  TGAAAGCAACCTTAACCAAGTTCTTCACTTTTGTGTGTGTCCCTGTCAGA  50
      |||||||||| |||||||||||| |||  ||||||||  |||||||| ||
seq2  TGAAAGCAACGTTAACCAAGTTC-TCATCTTTGTGTGATTCCCTGTCCGA  49

seq1  -GTCATGGTGTTGATGTCTCAGTGATGGCCTCCAGGCTTGTTGTCTTGGG  99
       ||||| ||||||||||||||||||||| || ||||||||||||||  ||
seq2  GGTCAT-GTGTTGATGTCTCAGTGATGG-CTTCAGGCTTGTTGTCT--GG  95

seq1  TCAGATTTCTGTTATTTGACACTGGCTTCAGTTCTTATAAATCTGATTCC  149
      |||||| |||||   |||||||||||||||||||||||||||||||||||
seq2  TCAGATATCTGT--ATTGACACTGGCTTCAGTTCTTATAAATCTGATTCC  143

seq1  TCCTTAAGTCAGAG-AAAGAGAG-AATTAGTCTCTCCAGAGATGACCTTC  197
      |||||||||||||| |||||||| ||||||||||||||||||||||||||
seq2  TCCTTAAGTCAGAGAAAAGAGAGAAATTAGTCTCTCCAGAGATGACCTTC  193

seq1  CTAATTGTTATCTAATGTCATGTGGGCAGCTCTGAAATCATACACATAC-  246
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CTAATTGTTATCTAATGTCATGTGGGCAGCTCTGAAATCATACACATACA  243

seq1  AATCAACACTAAATAGTCTCACTGGGTTGTACTAATATGTTAATGTGTAT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAACACTAAATAGTCTCACTGGGTTGTACTAATATGTTAATGTGTAT  293

seq1  ATATATGTATATATATATATATGTATATGTGTGTGTGTGTGTGTGTGTGT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGTATATATATATATATGTATATGTGTGTGTGTGTGTGTGTGTGT  343

seq1  ATGTAATTGTCAAAAAATGGGGAAACCATGTAGAGAGAAAGTGGGGGAAG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAATTGTCAAAAAATGGGGAAACCATGTAGAGAGAAAGTGGGGGAAG  393

seq1  ATGAAAAAGACTGGCCAGAAAGGACATGGGGTGGATTGCAGGAAGGAAAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAAAGACTGGCCAGAAAGGACATGGGGTGGATTGCAGGAAGGAAAT  443

seq1  GAATGAGAAGTAATACAATGACATCATAATTTTTTTTATTTTAAAAAAGA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAGAAGTAATACAATGACATCATAATTTTTTTTATTTTAAAAAAGA  493

seq1  AAGAGAGGATCTGACTACGGGGCACCCACATATCTTGGAAGTGAAAGAAC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGGATCTGACTACGGGGCACCCACATATCTTGGAAGTGAAAGAAC  543

seq1  AAACTGGGAGCGGGGTGATAATCAGCTTAGAGGCCTGTAACTGCTTACAT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGGGAGCGGGGTGATAATCAGCTTAGAGGCCTGTAACTGCTTACAT  593

seq1  TCAATTCACTAAGTGGAAGACAAAGTAGCAAGTGGCCACAGGGTCACTGA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTCACTAAGTGGAAGACAAAGTAGCAAGTGGCCACAGGGTCACTGA  643

seq1  AAGGATCAGGAAGCAAGAGTGGGGCTTCAGGGAAGGGGTTAGTTGAATGT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATCAGGAAGCAAGAGTGGGGCTTCAGGGAAGGGGTTAGTTGAATGT  693

seq1  CTGTACAGGAACCAAGTCTACCCTCATCACACCCCTCATCCCATGTCACC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACAGGAACCAAGTCTACCCTCATCACACCCCTCATCCCATGTCACC  743

seq1  AAGACAGTCTCAGAGGTTCCAAACAGCAGAATATCAGAATTCAATCCTTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGTCTCAGAGGTTCCAAACAGCAGAATATCAGAATTCAATCCTTT  793

seq1  GAGAAGTAGAACATAAAAGGTTCTGGATATAGGGGCTACAAATTATGGAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGTAGAACATAAAAGGTTCTGGATATAGGGGCTACAAATTATGGAA  843

seq1  GGAATGAGAGTCCTGTGAAAGGAGGAGGAGGGCTGGGGAAATAGCACAGT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGAGAGTCCTGTGAAAGGAGGAGGAGGGCTGGGGAAATAGCACAGT  893

seq1  GGCTAAAACAGGAGGACCAGAATTCAATCCGGGAAGTCACACAAGGTCAG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAAAACAGGAGGACCAGAATTCAATCCGGGAAGTCACACAAGGTCAG  943

seq1  GAGGGTGGGACATCATTCTTGGAATTACAGTTGGAATTC  985
      |||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTGGGACATCATTCTTGGAATTACAGTTGGAATTC  982