BAC Information

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BAC

Clone NameB6Ng01-315M19
Chromosome13 (Build37)
Map Location 111,883,045 - 111,947,411
singlet/doubletdoublet
Overlap genenone
Upstream geneRab3c, EG432803, 9830130M13Rik, Plk2, LOC100040614, LOC668159
Downstream gene4732495G21Rik, LOC100040640, EG621953, Gpbp1, LOC100040666, Mier3, Map3k1, LOC668181, LOC100040716
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-315M19.bB6Ng01-315M19.g
ACCGA106353GA106354
length1,097689
definitionB6Ng01-315M19.b B6Ng01-315M19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,946,886 - 111,947,411)(111,883,045 - 111,883,733)
sequence
gaattccgcgccatcttcttcctaacaagagtctgtttagttttgctagg
catccatcttgctctctagcaacccaaggtcttcaggagatgccaggttt
tatgttcagctctggaaaagggaagctggttgggggtccagtgtaatcag
taattggttctgggatgtatgtgtaagccaaatctagctgatgagacaca
gtttggaagtaattacagagaacctagtttgcttttgaaaacaatgcaca
tgtcatagtttttacctctgtgggtgagaataaagaagcatacagcttca
aacatcactgatggcgattatactagcaaaagaagcaaacaaaactaaac
aagaaaaccctagcatggcaagcattctaccctggtggtgagggaacaag
aaggggaagacacgaactcactgcttggtcagagtagcatcttatgctga
ctgtattttcatttcaatatataaacaatataaaagctaatctagagata
tttttccacacactatttctttctaagtcctgtgtgttttcatacatgca
gcacatctcaatttagctagctacccacacatcaagtgattagtcttgtg
tgtctcacagctgtgtcactgctggattgtgccaggatcggctctgctga
aatgtttccacaaatagaatttattccctgtcatggctattagttctata
gctgtgaagagacaccatgaccaaggcaacttagaaagcatttaattagg
gggttacttatagtttcagagggctagtctatcaacattatggcaaggag
tatggcaacaggctaagatgctgcttaaatacaggcatcagacagaggga
aaaaagtgaggctatgtctgggtataggctttgaaacctcaaagtgcacc
tctagtgacacatcttctccaacaaggccacacctcctaatcctttctaa
acagtcaacttcgaactaaacattcaaatatacgagcccgtgggggccat
tctcactcaaaccaccacaccgcacccttgactgaaactctgtaatgctt
ataatttgtcctcagacaacactgttgttctctcagtcagaacatgc
gaattcctgggggggggggggaagaacctgagaagccagttgaatggaga
agtataagatatgaagttcagacaatggggactgtctccagtgagagaaa
taaccagaaaagaacaggatgtataataagtctctagcaaattgtagaac
tcttctttcatgagcttgttacacagagaaatttgttaagcacaaaagga
gaagagtaagaatagattgtaggaggaagagcatagaggagaaacagaga
atggagggatgccttacctactgggagaaaaaagagacagacaaggtggc
taccccaggaaggacaacttctgcactcgcagcccatgggacactgagac
acgtaagtcaatccaagtctgatttgtgtgaacagataaaactaagaatt
gctgggttattttctcccactgatgttttctccacttgacaaggtacact
tgctcgttacccctagccttaggggaccccgaaccttcaataatctcaat
tgctgcagaataatgggagagaagaaggaattaggctagatagcttgtac
ctatggctttctatattaaggatataaaacacacaaagggggctggataa
aaaaagaaaattaggtcctttcactcacaccccaatctaaagcattgtta
gttaattatgaggccaggcaaaatgagatggcaggatca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_111946886_111947411
seq2: B6Ng01-315M19.b_620_1145 (reverse)

seq1  GCATG-TCTGAACTGAGAGAACAACAGGTGTGTCCTGAGGACAAAATAT-  48
      ||||| |||| ||||||||||||||| ||||   ||||||||||| ||| 
seq2  GCATGTTCTG-ACTGAGAGAACAACA-GTGTTGTCTGAGGACAAATTATA  48

seq1  AGCAATACAGAGTTCAAGTC-AGGGTGCGGTGTGGTGGTTTGAGTGAGAA  97
      |||| |||||||||  |||| |||||||||||||||||||||||||||||
seq2  AGCATTACAGAGTTTCAGTCAAGGGTGCGGTGTGGTGGTTTGAGTGAGAA  98

seq1  TGGCCCCCACGGGCTCGTATATTTGAATGTTTAGTTCGAAGTTGGACTGT  147
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TGGCCCCCACGGGCTCGTATATTTGAATGTTTAGTTCGAAGTT-GACTGT  147

seq1  TTAGGAAGGATTAGGAGGTGTGGCCTTGTTGGAGAAGATGTGTCACTAGA  197
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAAGGATTAGGAGGTGTGGCCTTGTTGGAGAAGATGTGTCACTAGA  197

seq1  GGTGCACTTTGAGGTTTCAAAGCCTATACCCAGACATAGCCTCACTTTTT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCACTTTGAGGTTTCAAAGCCTATACCCAGACATAGCCTCACTTTTT  247

seq1  TCCCTCTGTCTGATGCCTGTATTTAAGCAGCATCTTAGCCTGTTGCCATA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCTGTCTGATGCCTGTATTTAAGCAGCATCTTAGCCTGTTGCCATA  297

seq1  CTCCTTGCCATAATGTTGATAGACTAGCCCTCTGAAACTATAAGTAACCC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTGCCATAATGTTGATAGACTAGCCCTCTGAAACTATAAGTAACCC  347

seq1  CCTAATTAAATGCTTTCTAAGTTGCCTTGGTCATGGTGTCTCTTCACAGC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATTAAATGCTTTCTAAGTTGCCTTGGTCATGGTGTCTCTTCACAGC  397

seq1  TATAGAACTAATAGCCATGACAGGGAATAAATTCTATTTGTGGAAACATT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAACTAATAGCCATGACAGGGAATAAATTCTATTTGTGGAAACATT  447

seq1  TCAGCAGAGCCGATCCTGGCACAATCCAGCAGTGACACAGCTGTGAGACA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAGAGCCGATCCTGGCACAATCCAGCAGTGACACAGCTGTGAGACA  497

seq1  CACAAGACTAATCACTTGATGTGTGGGTA  526
      |||||||||||||||||||||||||||||
seq2  CACAAGACTAATCACTTGATGTGTGGGTA  526

seq1: chr13_111883045_111883733
seq2: B6Ng01-315M19.g_68_756

seq1  GAATTCCTGGGGGGGGGGGGGAAGAACCTGAGAAGCCAGTTGAATGGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGGGGGGGGGGGGAAGAACCTGAGAAGCCAGTTGAATGGAGA  50

seq1  AGTATAAGATATGAAGTTCAGACAATGGGGACTGTCTCCAGTGAGAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATAAGATATGAAGTTCAGACAATGGGGACTGTCTCCAGTGAGAGAAA  100

seq1  TAACCAGAAAAGAACAGGATGTATAATAAGTCTCTAGCAAATTGTAGAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCAGAAAAGAACAGGATGTATAATAAGTCTCTAGCAAATTGTAGAAC  150

seq1  TCTTCTTTCATGAGCTTGTTACACAGAGAAATTTGTTAAGCACAAAAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTTCATGAGCTTGTTACACAGAGAAATTTGTTAAGCACAAAAGGA  200

seq1  GAAGAGTAAGAATAGATTGTAGGAGGAAGAGCATAGAGGAGAAACAGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGTAAGAATAGATTGTAGGAGGAAGAGCATAGAGGAGAAACAGAGA  250

seq1  ATGGAGGGATGCCTTACCTACTGGGAGAAAAAAGAGACAGACAAGGTGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGGGATGCCTTACCTACTGGGAGAAAAAAGAGACAGACAAGGTGGC  300

seq1  TACCCCAGGAAGGACAACTTCTGCACTCGCAGCCCATGGGACACTGAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCCAGGAAGGACAACTTCTGCACTCGCAGCCCATGGGACACTGAGAC  350

seq1  ACGTAAGTCAATCCAAGTCTGATTTGTGTGAACAGATAAAACTAAGAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTAAGTCAATCCAAGTCTGATTTGTGTGAACAGATAAAACTAAGAATT  400

seq1  GCTGGGTTATTTTCTCCCACTGATGTTTTCTCCACTTGACAAGGTACACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGTTATTTTCTCCCACTGATGTTTTCTCCACTTGACAAGGTACACT  450

seq1  TGCTCGTTACCCCTAGCCTTAGGGGACCCCGAACCTTCAATAATCTCAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCGTTACCCCTAGCCTTAGGGGACCCCGAACCTTCAATAATCTCAAT  500

seq1  TGCTGCAGAATAATGGGAGAGAAGAAGGAATTAGGCTAGATAGCTTGTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCAGAATAATGGGAGAGAAGAAGGAATTAGGCTAGATAGCTTGTAC  550

seq1  CTATGGCTTTCTATATTAAGGATATAAAACACACAAAGGGGGCTGGATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGCTTTCTATATTAAGGATATAAAACACACAAAGGGGGCTGGATAA  600

seq1  AAAAAGAAAATTAGGTCCTTTCACTCACACCCCAATCTAAAGCATTGTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAAAATTAGGTCCTTTCACTCACACCCCAATCTAAAGCATTGTTA  650

seq1  GTTAATTATGAGGCCAGGCAAAAGGAGAGGGCAGGAGCA  689
      ||||||||||||||||||||||| |||| ||||||| ||
seq2  GTTAATTATGAGGCCAGGCAAAATGAGATGGCAGGATCA  689