BAC Information

Click to search

BAC

Clone NameB6Ng01-317H04
Chromosome13 (Build37)
Map Location 26,649,485 - 26,785,041
singlet/doubletdoublet
Overlap geneLOC100042191
Upstream geneLOC214973, LOC666221, LOC100042180
Downstream geneHdgfl1, LOC100040939, LOC100040945, LOC100040957, Prl, Prl3d1, Prl3d2, Prl3d3, Prl3c1, Prl3b1, Prl3a1, Prl6a1, Prl8a2, Prl2b1, Prl8a6, Prl8a8, Prl8a9, Prl8a1, Prl7b1, Prl7a1, Prl7a2, RP23-135A24.2-001
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-317H04.bB6Ng01-317H04.g
ACCGA107589GA107590
length1,1381,089
definitionB6Ng01-317H04.b B6Ng01-317H04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,649,485 - 26,650,642)(26,783,953 - 26,785,041)
sequence
gaattcagctgttttcctgtctctaaaactgggatctcaaggatgtgcca
taatactttttagcatttttcaacatgttgttggaagattgaactcaaac
cttcagaaggaccttgcaagcacgttagtgactgaactcaatccccagac
tcattcttgtcttgtctttggatgtgtatttatacagcaagccgcacagg
ttctgccatagtaatgagggaggaaatgacaaaatgtgaggtcaccatga
agttataaaataccttaagagttgatcaatattcatttatgaatgcacta
gcagacatatatctccttttcagctgaccagttcgcttcacagcaaaagc
ctcacagagagaactataaaagttctttcacattggccttgggaatgaag
gtgagggagagcattgatttgaagtaggtcacatttttattattgtgtgt
gacccacagaaagtgtcttcatttcctccataaagaaaaactcatttgac
aaatcactgtgagaccctcacataatagaggagagctatgtattgtcaaa
aacatgaatgggaaaatgctggcaaattgattttctaggttggtctgacc
aatctgcttttcattagttttaccagcataagtactacatatataaaaat
gagaggtgtttgtgtatgtgtgcttgcacatgctattttgtttcaatgtg
atttatcataagataacaccccaaaggcagtggccttccaatgaaggggg
aagggaaaaataatgattgttcttctgtgggtccctggactgaattactc
catttccccaagtcagcaactcctctgcacacatctgaaacactaaagtt
ggttcctgaaaatattgcctgctggttaaatcacccacaatggataggcc
cttaaagaggtagacaggctttgaaatttattgccacatgcctatacatc
tttccaggcctgcaagtctctaaagtcttcctcaaacagattcagtgttt
gtccctgcagagggcaccaagatcatgcagctgccagaccatgctatacg
gtcagaacagcagatttcttgtgtggcctctgccaactttacagttgaac
ccagcaatgggatggccttgagctgaatcaatttactt
gaattcaaagcatggtgttgatggatacaggagtgtgtgaccacctactc
agatgtagaattcagatagatgtgctctatgagaagtgtggatttgagac
atggaagacatgggcacgagtctcatcaaggtgttttgtttatcagtgga
aaaagttctgactgagctcctgctcgaatgagaactgatatgttcaatat
ttcaactaaaatctcaattacggcaaagtgcaatagttacactatatcta
tggctgtcatcacagatgagcttcaaaaaagcaaagcacgtctgtgataa
tgaagtttacttgtattttaagattcaatttgtttccatatgtttacttt
gaatattgagaataaggaatttctatctcaggtaagtatattcctgtact
ggctagttttgtgtcaacttgacacagctggagttatcacagagaaagga
gcttcagttgaggaaatgcctccatgagatccaactgtaaggcattttct
caattagtgatcaagggggaaaggccccttgtgggtgggaccatctctgg
gctagtagtgttgggttctgtatgagagcaggctgagcaagccaggggaa
gcaagccagtaaggaacattcctccgtggcctctgcatcagctcctgctt
actgacctgcttgagttctagtcctgacttccttggtgatgaacagcagt
atggaagtataagccgaataaaccctttcctccccaacttgcttcttggg
catgatgcttgtgcaggaatagaaaccctgactaagacaataccctaggt
agatatgtactcacatattaaaactccttttattcatgtacatgcacatt
tttatttatattttttgatgagttagttttctatattattatattttatc
ttattatattattatcccttagaaatctaagtttgtttctaaggagaaga
gacatggaattgatctagatgcaatcagaggtgggaagaaaatgaagaga
ggagggaaaccactatcagctattattattatgagaaaacctcctctatt
tcaaataaaggaaaaatacgcaatatttaaggactacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_26649485_26650642
seq2: B6Ng01-317H04.b_45_1182

seq1  GAATTCAGCTGTTTTCCTGTCTCTAAAACTGGGATCTCAAGGATGTGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTGTTTTCCTGTCTCTAAAACTGGGATCTCAAGGATGTGCCA  50

seq1  TAATACTTTTTAGCATTTTTCAACATGTTGTTGGAAGATTGAACTCAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACTTTTTAGCATTTTTCAACATGTTGTTGGAAGATTGAACTCAAAC  100

seq1  CTTCAGAAGGACCTTGCAAGCACGTTAGTGACTGAACTCAATCCCCAGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGAAGGACCTTGCAAGCACGTTAGTGACTGAACTCAATCCCCAGAC  150

seq1  TCATTCTTGTCTTGTCTTTGGATGTGTATTTATACAGCAAGCCGCACAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTTGTCTTGTCTTTGGATGTGTATTTATACAGCAAGCCGCACAGG  200

seq1  TTCTGCCATAGTAATGAGGGAGGAAATGACAAAATGTGAGGTCACCATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCCATAGTAATGAGGGAGGAAATGACAAAATGTGAGGTCACCATGA  250

seq1  AGTTATAAAATACCTTAAGAGTTGATCAATATTCATTTATGAATGCACTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATAAAATACCTTAAGAGTTGATCAATATTCATTTATGAATGCACTA  300

seq1  GCAGACATATATCTCCTTTTCAGCTGACCAGTTCGCTTCACAGCAAAAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACATATATCTCCTTTTCAGCTGACCAGTTCGCTTCACAGCAAAAGC  350

seq1  CTCACAGAGAGAACTATAAAAGTTCTTTCACATTGGCCTTGGGAATGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAGAGAGAACTATAAAAGTTCTTTCACATTGGCCTTGGGAATGAAG  400

seq1  GTGAGGGAGAGCATTGATTTGAAGTAGGTCACATTTTTATTATTGTGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGGAGAGCATTGATTTGAAGTAGGTCACATTTTTATTATTGTGTGT  450

seq1  GACCCACAGAAAGTGTCTTCATTTCCTCCATAAAGAAAAACTCATTTGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCACAGAAAGTGTCTTCATTTCCTCCATAAAGAAAAACTCATTTGAC  500

seq1  AAATCACTGTGAGACCCTCACATAATAGAGGAGAGCTATGTATTGTCAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCACTGTGAGACCCTCACATAATAGAGGAGAGCTATGTATTGTCAAA  550

seq1  AACATGAATGGGAAAATGCTGGCAAATTGATTTTCTAGGTTGGTCTGACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGAATGGGAAAATGCTGGCAAATTGATTTTCTAGGTTGGTCTGACC  600

seq1  AATCTGCTTTTCATTAGTTTTACCAGCATAAGTACTACATATATAAAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGCTTTTCATTAGTTTTACCAGCATAAGTACTACATATATAAAAAT  650

seq1  GAGAGGTGTTTGTGTATGTGTGCTTGCACATGCTATTTTGTTTCAATGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGTGTTTGTGTATGTGTGCTTGCACATGCTATTTTGTTTCAATGTG  700

seq1  ATTTATCATAAGATAACACCCCAAAGGCAGTGGCCTTCCAATGAAGGGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATCATAAGATAACACCCCAAAGGCAGTGGCCTTCCAATGAAGGGGG  750

seq1  AAGGGAAAAATAATGATTGTTCTTCTGTGGGTCCCTGGACTGAATTACTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAAAAATAATGATTGTTCTTCTGTGGGTCCCTGGACTGAATTACTC  800

seq1  CATTTCCCCAAGTCAGCAACTCCTCTGCACACATCTGAAACACTAAAGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCCCCAAGTCAGCAACTCCTCTGCACACATCTGAAACACTAAAGTT  850

seq1  GGTTCCTGAAAATATTGCCTGCTGGTTAAATCACCCACAATGGATAGGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCTGAAAATATTGCCTGCTGGTTAAATCACCCACAATGGATAGGCC  900

seq1  CTTAAAGAGGTAGACAGGCTTTGAAATTTATTGCCACATGCCTATACATC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAGAGGTAGACAGGCTTTGAAATTTATTGCCACATGCCTATACATC  950

seq1  TTTCCAAGGCCTGCAAGTCTCTAAAGTCTTCCTCAAACAAGATTTCCAGT  1000
      ||||| |||||||||||||||||||||||||||||||| |||||  ||||
seq2  TTTCC-AGGCCTGCAAGTCTCTAAAGTCTTCCTCAAAC-AGATT--CAGT  996

seq1  GTTTGTCCCTGCAGAGGGCAACCAAGATCCATGCAGCCTGCCAGACACAT  1050
      ||||||||||||||||||| |||||||| ||||||| ||||||||| |||
seq2  GTTTGTCCCTGCAGAGGGC-ACCAAGAT-CATGCAG-CTGCCAGAC-CAT  1042

seq1  GCTTATACCGTCAAGAAACAGCAGGGATTTCCTTGTGTGGCTCTTTGCAA  1100
      || ||||| ||||   |||||||  ||||| |||||||||| || ||| |
seq2  GC-TATACGGTCA--GAACAGCA--GATTT-CTTGTGTGGC-CTCTGCCA  1085

seq1  AACCTTTACAGTTGACCCAAGCCATGGGAATGGCTTGAAGCTGAATCATA  1150
      |  |||||||||||| || ||| ||||| ||||| |  |||||||||  |
seq2  A--CTTTACAGTTGAACCCAGCAATGGG-ATGGCCTTGAGCTGAATC--A  1130

seq1  TTTTACTT  1158
       |||||||
seq2  ATTTACTT  1138

seq1: chr13_26783953_26785041
seq2: B6Ng01-317H04.g_65_1153 (reverse)

seq1  GTGTAGT-CTTTAATATTGCGTATTTTTCCTTTATTTGGAAATAGAGGA-  48
      ||||||| ||| ||||||||||||||||||||||||| ||||||||||| 
seq2  GTGTAGTCCTTAAATATTGCGTATTTTTCCTTTATTT-GAAATAGAGGAG  49

seq1  GTTTTCTCAT-ATAAT-ATAGCCTGATAGTGGTTTCCCTCCTCTCTTCAT  96
      |||||||||| ||||| |||| ||||||||||||||||||||||||||||
seq2  GTTTTCTCATAATAATAATAG-CTGATAGTGGTTTCCCTCCTCTCTTCAT  98

seq1  TTTCTTCCCACCTCTGATTGCATCTAGATCAATTCCATGTCTTCTTCTCC  146
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTTCTTCCCACCTCTGATTGCATCTAGATCAATTCCATGTC-TCTTCTCC  147

seq1  TTAGAAAACAAACTTAGATTTCTAAGGGATAATAATATAATAAGATAAAA  196
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAG-AAACAAACTTAGATTTCTAAGGGATAATAATATAATAAGATAAAA  196

seq1  TATAATAATATAGAAAACTAACTCATCAAAAAATATAAATAAAAATGTGC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATAATATAGAAAACTAACTCATCAAAAAATATAAATAAAAATGTGC  246

seq1  ATGTACATGAATAAAAGGAGTTTTAATATGTGAGTACATATCTACCTAGG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACATGAATAAAAGGAGTTTTAATATGTGAGTACATATCTACCTAGG  296

seq1  GTATTGTCTTAGTCAGGGTTTCTATTCCTGCACAAGCATCATGCCCAAGA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGTCTTAGTCAGGGTTTCTATTCCTGCACAAGCATCATGCCCAAGA  346

seq1  AGCAAGTTGGGGAGGAAAGGGTTTATTCGGCTTATACTTCCATACTGCTG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGTTGGGGAGGAAAGGGTTTATTCGGCTTATACTTCCATACTGCTG  396

seq1  TTCATCACCAAGGAAGTCAGGACTAGAACTCAAGCAGGTCAGTAAGCAGG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCACCAAGGAAGTCAGGACTAGAACTCAAGCAGGTCAGTAAGCAGG  446

seq1  AGCTGATGCAGAGGCCACGGAGGAATGTTCCTTACTGGCTTGCTTCCCCT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGATGCAGAGGCCACGGAGGAATGTTCCTTACTGGCTTGCTTCCCCT  496

seq1  GGCTTGCTCAGCCTGCTCTCATACAGAACCCAACACTACTAGCCCAGAGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGCTCAGCCTGCTCTCATACAGAACCCAACACTACTAGCCCAGAGA  546

seq1  TGGTCCCACCCACAAGGGGCCTTTCCCCCTTGATCACTAATTGAGAAAAT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCCACCCACAAGGGGCCTTTCCCCCTTGATCACTAATTGAGAAAAT  596

seq1  GCCTTACAGTTGGATCTCATGGAGGCATTTCCTCAACTGAAGCTCCTTTC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTACAGTTGGATCTCATGGAGGCATTTCCTCAACTGAAGCTCCTTTC  646

seq1  TCTGTGATAACTCCAGCTGTGTCAAGTTGACACAAAACTAGCCAGTACAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGATAACTCCAGCTGTGTCAAGTTGACACAAAACTAGCCAGTACAG  696

seq1  GAATATACTTACCTGAGATAGAAATTCCTTATTCTCAATATTCAAAGTAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATACTTACCTGAGATAGAAATTCCTTATTCTCAATATTCAAAGTAA  746

seq1  ACATATGGAAACAAATTGAATCTTAAAATACAAGTAAACTTCATTATCAC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATGGAAACAAATTGAATCTTAAAATACAAGTAAACTTCATTATCAC  796

seq1  AGACGTGCTTTGCTTTTTTGAAGCTCATCTGTGATGACAGCCATAGATAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGTGCTTTGCTTTTTTGAAGCTCATCTGTGATGACAGCCATAGATAT  846

seq1  AGTGTAACTATTGCACTTTGCCGTAATTGAGATTTTAGTTGAAATATTGA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTAACTATTGCACTTTGCCGTAATTGAGATTTTAGTTGAAATATTGA  896

seq1  ACATATCAGTTCTCATTCGAGCAGGAGCTCAGTCAGAACTTTTTCCACTG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATCAGTTCTCATTCGAGCAGGAGCTCAGTCAGAACTTTTTCCACTG  946

seq1  ATAAACAAAACACCTTGATGAGACTCGTGCCCATGTCTTCCATGTCTCAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACAAAACACCTTGATGAGACTCGTGCCCATGTCTTCCATGTCTCAA  996

seq1  ATCCACACTTCTCATAGAGCACATCTATCTGAATTCTACATCTGAGTAGG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACACTTCTCATAGAGCACATCTATCTGAATTCTACATCTGAGTAGG  1046

seq1  TGGTCACACACTCCTGTATCCATCAACACCATGCTTTGAATTC  1089
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCACACACTCCTGTATCCATCAACACCATGCTTTGAATTC  1089