BAC Information

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BAC

Clone NameB6Ng01-317M23
Chromosome13 (Build37)
Map Location 116,133,614 - 116,134,691
singlet/doubletsinglet
Overlap genenone
Upstream geneNdufs4, LOC100040958, Fst, 4930467J12Rik, Mocs2, Itga2, LOC100040975, Itga1, Pelo
Downstream geneLOC100041023, LOC547402, LOC100041045, EG623174, Isl1, EG668276
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-317M23.bB6Ng01-317M23.g
ACCGA107863GA107864
length1,2071,066
definitionB6Ng01-317M23.b B6Ng01-317M23.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagcgctgtaccccattcttgaatagggttatttgatt
ctctgaagtctaatttcttgagttctttgtatatattggatattaggcct
ctatcagatgtaggattggttaatatcttttcccaatctgttggttgcca
ttttgtcctattgatagtgtcctttgatttacaaaagcgttgcaatttta
tgaggtcccatttgtcaattcttgatcttagagcataagctattggtgtt
cctttcagaaaaatttcccctgtgctcatgtttctgaggctcttacccac
tttctcctctattaatttcattgtatctggttttatgtggaggtccttta
tccatttggacttgagctttgtacaaggagatgagaattgatcgatttgc
attctacatgatgacttccagttgaattagcaccatttgttgaaaactct
gttttatcactggatggcccaaagtcttggggactttcttccttcctctc
actctgtctgtcacctgtagctcaatctaaaattccaacctctgtctccc
tgcccagccattggctatactgcaattctttattacgaatcaaagtcagc
tgggggcagggaccctcagtggctacaagctcaggttttggaagtcaaat
taggacaaagcattagaactaatccctaaatatagctagcatatttaaat
ggttataccaagtccagaaaataaaactaacaaatagaagatataatttt
ttgaacatcttttccacgggaagcagacttcaaatggggaaaaagtaatg
tcaagtaaagtgaggcaaactaactaaaatagaaattcgtgtcataaata
cagatattggctttaataaaacaacatttattttataaatgagtactaat
ttctgtatctattcactgaacttttccttgagatagtattaaagaaggtc
atttgttgattaagaagaaattacatgaagagaatcagcaaataacatgc
tatgaagagcagaagttagttatatttttttacaggtttaattcattaat
tttctttaaaatggcaattttatggattatagtggttatatatccaaggt
cttattctctggattaggatgaaaatggatttggaattgggcctgcaggt
ggactattacatgatgattatagtagatgatcagatgagtataataagat
aacatag
gaattccctggatcctggagttccatttggttgtgaccagtcatgtgtat
tctagcggggaaggggtgatctgggacctctgcaagagtagtgagtcttc
taaacaaactgtggcaccatctctctagcacctaacgttgtgattttttt
ttttaaattgatatcatctttttattatttaaaggttttctttctgaaaa
tcctatgtaatggtatttttttccttattgtgtatgtaaggcagtggttc
tcaacctgtgggtcttgaccccatggaggtcaattatcagataacctcca
tatcagacatttacattataattcatataagtagcaacaaaataatttaa
tggtttaggggctcaccacaacataaagggtcacagcatcaggagggttg
agaatgtgtttagaggatacatagtcatatggtgtttggggacagacaga
acgtttggggactgaagattgtctgagaggtcctagattagaagagttgg
caggcaagtagcagccactatgtgacgttgagaacaaaagagtcaggtca
ctagagcacctgagcctacaatacatgatttttttctccattcctttcgt
ctgcttgctcctccttggttccaacaaaaacaccatgtgtgaaagaataa
tcagggcattgcaaaaataccaatccatgatggtttcttagacctggtag
attttacacattgggaaaaggggagtcccgttgaagatggtaacccactt
cctgatttgacttcaaatctcgccatctctgctcatgtaaactatgcttt
ctgaagcacgttgattccgttcatgccgtggcttcccgtccacctttctc
tttcaatgtgctatgcttcttctcactcgctgttagctaatttcataggc
cagtgtatgtcactgcttgcccagggtgggcagtccacctctatgtctgc
ctcatttggatgctgctgtctgctacacagatcactattcttgtatcact
ctgctagaagtcatgtttgactgtgagtgcagctccaacccccatgcctc
cctgccttctgactgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_116133614_116134691
seq2: B6Ng01-317M23.g_69_1134

seq1  GAATTCCCTGGATCCTGGAGTTCCATTTGGTTGTGACCAGTCATGTGTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTGGATCCTGGAGTTCCATTTGGTTGTGACCAGTCATGTGTAT  50

seq1  TCTAGCGGGGAAGGGGTGATCTGGGACCTCTGCAAGAGTAGTGAGTCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCGGGGAAGGGGTGATCTGGGACCTCTGCAAGAGTAGTGAGTCTTC  100

seq1  TAAACAAACTGTGGCACCATCTCTCTAGCACCTAACGTTGTGATTTTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAAACTGTGGCACCATCTCTCTAGCACCTAACGTTGTGATTTTTTT  150

seq1  TTTTAAATTGATATCATCTTTTTATTATTTAAAGGTTTTCTTTCTGAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAATTGATATCATCTTTTTATTATTTAAAGGTTTTCTTTCTGAAAA  200

seq1  TCCTATGTAATGGTATTTTTTTCCTTATTGTGTATGTAAGGCAGTGGTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATGTAATGGTATTTTTTTCCTTATTGTGTATGTAAGGCAGTGGTTC  250

seq1  TCAACCTGTGGGTCTTGACCCCATGGAGGTCAATTATCAGATAACCTCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCTGTGGGTCTTGACCCCATGGAGGTCAATTATCAGATAACCTCCA  300

seq1  TATCAGACATTTACATTATAATTCATATAAGTAGCAACAAAATAATTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGACATTTACATTATAATTCATATAAGTAGCAACAAAATAATTTAA  350

seq1  TGGTTTAGGGGCTCACCACAACATAAAGGGTCACAGCATCAGGAGGGTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTAGGGGCTCACCACAACATAAAGGGTCACAGCATCAGGAGGGTTG  400

seq1  AGAATGTGTTTAGAGGATACATAGTCATATGGTGTTTGGGGACAGACAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGTGTTTAGAGGATACATAGTCATATGGTGTTTGGGGACAGACAGA  450

seq1  ACGTTTGGGGACTGAAGATTGTCTGAGAGGTCCTAGATTAGAAGAGTTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTTGGGGACTGAAGATTGTCTGAGAGGTCCTAGATTAGAAGAGTTGG  500

seq1  CAGGCAAGTAGCAGCCACTATGTGACGTTGAGAACAAAAGAGTCAGGTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAAGTAGCAGCCACTATGTGACGTTGAGAACAAAAGAGTCAGGTCA  550

seq1  CTAGAGCACCTGAGCCTACAATACATGATTTTTTTCTCCATTCCTTTCGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGCACCTGAGCCTACAATACATGATTTTTTTCTCCATTCCTTTCGT  600

seq1  CTGCTTGCTCCTCCTTGGTTCCAACAAAAACACCATGTGTGAAAGAATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTGCTCCTCCTTGGTTCCAACAAAAACACCATGTGTGAAAGAATAA  650

seq1  TCAGGGCATTGCAAAAATACCAATCCATGATGGTTTCTTAGACCTGGTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGCATTGCAAAAATACCAATCCATGATGGTTTCTTAGACCTGGTAG  700

seq1  ATTTTACACATTGGGAAAAGGGGAGTCCCGTTGAAGATGGTAACCCACTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTACACATTGGGAAAAGGGGAGTCCCGTTGAAGATGGTAACCCACTT  750

seq1  CCTGATTTGACTTCAAATCTCGCCATCTCTGCTCATGTAAACTATGCTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATTTGACTTCAAATCTCGCCATCTCTGCTCATGTAAACTATGCTTT  800

seq1  CTGAAGCACGTTGATTCCGTTCATGCCGTGGCTTCCCGTCCACCTTTCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGCACGTTGATTCCGTTCATGCCGTGGCTTCCCGTCCACCTTTCTC  850

seq1  TTTCAATGTGCTATGCTTCTTCTCACTCGCTGTTAGCTAATTTCATAGGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATGTGCTATGCTTCTTCTCACTCGCTGTTAGCTAATTTCATAGGC  900

seq1  CAGTGTATGTCACTGCTTGCCCAGGGTGGGCAGTCCACCTCTATGTCTGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTATGTCACTGCTTGCCCAGGGTGGGCAGTCCACCTCTATGTCTGC  950

seq1  CTCATTTGGATGCTGCTGTTCTTGCTACACAGAATCACTTATTCTTGGTA  1000
      |||||||||||||||||||   |||||||||| ||||| ||||||| |||
seq2  CTCATTTGGATGCTGCTGT--CTGCTACACAG-ATCAC-TATTCTT-GTA  995

seq1  TCACCTCTGCTAGAAAGTCATGTTTGAACTGTGAGTGGCAAGCCTCCCAC  1050
      ||| ||||||||| |||||||||||| ||||||||| |||   |||| ||
seq2  TCA-CTCTGCTAG-AAGTCATGTTTG-ACTGTGAGT-GCA--GCTCCAAC  1039

seq1  CCCCATGGCTCCCCTGCCTTCTGACTGT  1078
      ||||||| || |||||||||||||||||
seq2  CCCCATGCCT-CCCTGCCTTCTGACTGT  1066