BAC Information

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BAC

Clone NameB6Ng01-318D04
Chromosome13 (Build37)
Map Location 103,231,506 - 103,232,625
singlet/doubletsinglet
Overlap genenone
Upstream genePik3r1
Downstream geneCd180, Mast4, EG621312, EG432800, LOC432801
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-318D04.bB6Ng01-318D04.g
ACCGA108148GA108149
length1,1901,118
definitionB6Ng01-318D04.b B6Ng01-318D04.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccacacctaaacatgataaaagcaatctacagcaaacca
gtagccaacatcaaagtaaatggagagaagctgaaagcaatcccgttaaa
atcagggaatagacaaggctgcccactttctccctaccttttcaacatag
tacttgaattattatccagagcaatttgacaacaaaaggagatcaagggg
atacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatat
gatagtatatataagtgaccctaaaaattctaccagagaactcctaaacc
tgataaacagcttcggtgaagtagctggatataaaataaactcaaacaag
tcaatggcctttctctatacaaagaataaacaggctgagaaagaaattag
agaaacaacacccttctcaatagtcacaaataatataaaatatcttggcg
tgactctaactaaggaagtgaaagatctgtatgataaaaacttcaagtct
ctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatg
ctcatggattggcagaatcaacattgtaaaaatggctatcttgccaaaag
caatctacagattcaatgcaatccccatcaaaattccaactcaattcttc
aacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaacc
taggatagcaaaaactcttctcaaggataaaagaacctctcgtggaatca
ccatgcctgatctaaagctttactacagagcaattgtgataaaaactgca
tggtactggtatagagacagacaagtagaccaatggaatagaattgaaga
cccaaaaatgaatccacacacctatggtcacttgatcttcgacaagggag
ctaaaaccatccagtggaagaaagacagcattttcaacaaattgggtgct
ggcacaactgggttgttatcatgtagaagaatgcgaatcgatccatactt
atctccttgtactaagtcaaatctaagtggatcaaagacttcacaataaa
acagaagaacactgaaacttatagaagaagaaaggtggggaaaaggcctg
aagaatatggcacaacgggaaaaaacttcctgaacagaacaggcaaatgc
cttgtgtgctgtaagaattcgcaagaaaatttgtgagcca
gaattccttacctctgtgggtgggaattgaatgaaagacacaatggggag
aggtctcagggtgtgaagaacgtaagaatatttgtgtgctctgctagagt
agtgtttatatgaaatcatatgtgtttcaaaatttaccaaagtgtataat
taggactgaaaacaaattaatattaactactactaataaaaaagtagttg
tagtgaatgaaaaactctctgtcttcccatccagtcaggcatagcatgtc
ccagtaatacaggctggggacagtggtggggtatttctctgcggttctaa
gagtaaagtcactagctctgcacagttttcatgagacctatgagatttct
tggccattggtctctccaagttggaggagtggtgtcactaacttgaggtg
tcttggacctacttcaaggtgactcagggttcattttccttctgttctac
agctcatttaggaaaatttcatgcaagactagctcataggtcaaatggtt
gattgagtattggccttaccccaagcccatctccccttgtcctcagttca
ggtcatttccgtcacatccttcatcttttcaacctcagttcttggataag
aaaaaactctgtcagatcattcctgctaaggatgttggtatggggacaga
aagatgccaagagcatgctctttatctcatgacagaaaatgaatgctgtc
tttctttgttgtaactgaagtcacattttctgttcacgtatcaaagcctc
ttttgtggtgattctggggtatctgcgcagcagaatagccacgccttctc
cttatggttcttcctgtatacctgctttcaggatggattcacagttggat
tttcctttctgaaaagacaagactgttctcataccagccttggggcacag
ctcagagataagacctctaggaaggctttagcagattgcatagatcccac
atttagtgtctctgtggtttgttgttgttgttgttttgttgtttagcctt
tcctcaaaaccacaccacctcagtacagagctgggtgggggaggagagtg
ttccactttcctcttgtagtgtaagccttgctgatagataccctggtccc
actgaatgacttccgact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_103231506_103232625
seq2: B6Ng01-318D04.g_65_1182 (reverse)

seq1  AGTCGGAAGTAATTCAGTGGGGCACAGGCTA-CTATCAGCA--GCTTACA  47
      |||||||||| |||||||||| | |||| || |||||||||  |||||||
seq2  AGTCGGAAGTCATTCAGTGGGAC-CAGGGTATCTATCAGCAAGGCTTACA  49

seq1  CTAC-AGAGGAAAGTG--ACACTCT-CTCCCCCAACCAGCTCTGTACTGA  93
      |||| |||||||||||  ||||||| |||||||| |||||||||||||||
seq2  CTACAAGAGGAAAGTGGAACACTCTCCTCCCCCACCCAGCTCTGTACTGA  99

seq1  GTGTGTTG-GGTTTTGAGGAAAGGCTAAAACAAACAAAAACAAACAAACA  142
      | ||| || ||||||||||||||||| ||||||   |||||||   ||||
seq2  G-GTGGTGTGGTTTTGAGGAAAGGCT-AAACAA--CAAAACAA--CAACA  143

seq1  AACAAACAAACCACAGAGAACACTAAATGTGGGATCTATGCAATCTGCTA  192
      |   |||||||||||||| |||||||||||||||||||||||||||||||
seq2  A--CAACAAACCACAGAG-ACACTAAATGTGGGATCTATGCAATCTGCTA  190

seq1  AAGCCTTCCTAGAGGTCTTATCTCTGAGCTGTGCCCCAAGGCTGGTATGA  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTTCCTAGAGGTCTTATCTCTGAGCTGTGCCCCAAGGCTGGTATGA  240

seq1  GAACAGTCTTGTCTTTTCAGAAAGGAAAATCCAACTGTGAATCCATCCTG  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGTCTTGTCTTTTCAGAAAGGAAAATCCAACTGTGAATCCATCCTG  290

seq1  AAAGCAGGTATACAGGAAGAACCATAAGGAGAAGGCGTGGCTATTCTGCT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGGTATACAGGAAGAACCATAAGGAGAAGGCGTGGCTATTCTGCT  340

seq1  GCGCAGATACCCCAGAATCACCACAAAAGAGGCTTTGATACGTGAACAGA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCAGATACCCCAGAATCACCACAAAAGAGGCTTTGATACGTGAACAGA  390

seq1  AAATGTGACTTCAGTTACAACAAAGAAAGACAGCATTCATTTTCTGTCAT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTGACTTCAGTTACAACAAAGAAAGACAGCATTCATTTTCTGTCAT  440

seq1  GAGATAAAGAGCATGCTCTTGGCATCTTTCTGTCCCCATACCAACATCCT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATAAAGAGCATGCTCTTGGCATCTTTCTGTCCCCATACCAACATCCT  490

seq1  TAGCAGGAATGATCTGACAGAGTTTTTTCTTATCCAAGAACTGAGGTTGA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGGAATGATCTGACAGAGTTTTTTCTTATCCAAGAACTGAGGTTGA  540

seq1  AAAGATGAAGGATGTGACGGAAATGACCTGAACTGAGGACAAGGGGAGAT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATGAAGGATGTGACGGAAATGACCTGAACTGAGGACAAGGGGAGAT  590

seq1  GGGCTTGGGGTAAGGCCAATACTCAATCAACCATTTGACCTATGAGCTAG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTGGGGTAAGGCCAATACTCAATCAACCATTTGACCTATGAGCTAG  640

seq1  TCTTGCATGAAATTTTCCTAAATGAGCTGTAGAACAGAAGGAAAATGAAC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCATGAAATTTTCCTAAATGAGCTGTAGAACAGAAGGAAAATGAAC  690

seq1  CCTGAGTCACCTTGAAGTAGGTCCAAGACACCTCAAGTTAGTGACACCAC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGTCACCTTGAAGTAGGTCCAAGACACCTCAAGTTAGTGACACCAC  740

seq1  TCCTCCAACTTGGAGAGACCAATGGCCAAGAAATCTCATAGGTCTCATGA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCAACTTGGAGAGACCAATGGCCAAGAAATCTCATAGGTCTCATGA  790

seq1  AAACTGTGCAGAGCTAGTGACTTTACTCTTAGAACCGCAGAGAAATACCC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGTGCAGAGCTAGTGACTTTACTCTTAGAACCGCAGAGAAATACCC  840

seq1  CACCACTGTCCCCAGCCTGTATTACTGGGACATGCTATGCCTGACTGGAT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACTGTCCCCAGCCTGTATTACTGGGACATGCTATGCCTGACTGGAT  890

seq1  GGGAAGACAGAGAGTTTTTCATTCACTACAACTACTTTTTTATTAGTAGT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGACAGAGAGTTTTTCATTCACTACAACTACTTTTTTATTAGTAGT  940

seq1  AGTTAATATTAATTTGTTTTCAGTCCTAATTATACACTTTGGTAAATTTT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAATATTAATTTGTTTTCAGTCCTAATTATACACTTTGGTAAATTTT  990

seq1  GAAACACATATGATTTCATATAAACACTACTCTAGCAGAGCACACAAATA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACACATATGATTTCATATAAACACTACTCTAGCAGAGCACACAAATA  1040

seq1  TTCTTACGTTCTTCACACCCTGAGACCTCTCCCCATTGTGTCTTTCATTC  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTACGTTCTTCACACCCTGAGACCTCTCCCCATTGTGTCTTTCATTC  1090

seq1  AATTCCCACCCACAGAGGTAAGGAATTC  1120
      ||||||||||||||||||||||||||||
seq2  AATTCCCACCCACAGAGGTAAGGAATTC  1118