BAC Information

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BAC

Clone NameB6Ng01-318D23
Chromosome4 (Build37)13 (Build37)
Map Location 146,951,157 - 146,952,32165,498,169 - 65,498,371
singlet/doubletsingletsinglet
Overlap geneOTTMUSG00000010673
Upstream geneLOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701, OTTMUSG00000010671, LOC545718
Downstream gene2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2, Ubiad1, Frap1, Angptl7, Exosc10, LOC100043151
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-318D23.bB6Ng01-318D23.g
ACCGA108186GA108187
length1,170882
definitionB6Ng01-318D23.b B6Ng01-318D23.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(146,951,157 - 146,952,321)(65,498,169 - 65,498,371)
sequence
gaattcaatctttgttcttcacagagaccctgggagaaggacaacaacaa
gaatgagtgagtctctggtaaatacaccacaggtctgtgtcctttacaca
tttcttttttaaaaaaatctctttttattcaagtcatccaaaaattttaa
tctctacatgtggaatggtatctaaagggcttattttctatgatctatat
cttttgtaataatgagaatttaatgtttttccctttcatgcatataatgg
ctttatattttaacttgatttttatattgtgaggatatataattcccttg
gactagagacctgcatgtctcaaataggatctattacagtgatgctcaaa
gaacagactgatgggtattttctatgttgaataagttctgtccttttgta
ttagtgtgaagtaaggtctcttgtgccacataaattgcatttcagggatg
gtcaggtttctaaacataaacttgtgaatgaggatatagaaataagtata
aattcacatcactaaagaagatatgaaagagtagaatttgtagaagctaa
aattatataagatccactgttttgaatcctaatagtaaatatattattag
ctccctagggtcacagataatggaaggaaaatatctttcttttaccatta
gtgtgattgtgagatgatacatatttcagtattctgaaaacacttttttc
acacctcatgtcacacagtaatcacaattgacacctgaaatctatttatc
tcaagagagatactgtccctgtggaaaattcacaatatatagttatttat
ccctccttttggtttcagaaataattttaagtcctgtttttttcaccttt
gtatttcatcacatgaactatattagtaagatttttctagagaggatagc
tatgggtgctgtgcataaaccatcaattttcaaaaataatgaatgtcctt
tcttattttttggtctctttttctttagaagggaaaggcttgatacaatc
tatgctaatcctctcaggcaggctggtgtattacatagggaaaaatggag
ggtgtggcaatggtttcttattttttcaattacgatactattttcttgag
gtacataaggggtatattctgaagttttttaggttcactggaatggatac
tatgcctaaaacacacgagt
gaattcatacaggagagaaaccttacaaatgcagtgaatgtgacaaatgc
tttaccaaacaatccaatcttagtattcatcagagaattcatacaggaga
gaaaccttacaaatgcagtgaatgtgacaaatgctttacccaacaatccc
atcttagtattcatcagagaattcatacaggagagaaaccttacaaatgc
agtgaatgtgacaaatgctttacccaacaatcctatcttagtattcatca
gagaattcatgcaggagagaaaccttacaaatgcagtgaatgtgacaaat
gctttactacaaaaggcaatctgataattcatcagagaattcatacaaga
gagaaaccttacaaatgtagtgaatgtggcaaatgctttactgaaaaaag
cagtctgagaattcatcagagaattcatacaggagagaaaccttacaaat
gcagtgaatgtgacaaatgctttaccaaacaatccaaacttagtattcat
cagagaattcatacaggagagaaaccttacaaatgcagtgaatgtgaaaa
atgctttaatgaaaaaaacagtctgaaaattcatcagagaattcatacag
gagagagaccttacaaatgtagtgaatgtgacaaatgctttacccaaaaa
tcctatcttaatattcatcagagaattcatgcaggagagaaaccttacaa
atgcagtgaatgtgacaaatgctttactacaaaaggcaatctgataattc
atcagagaattcatacaagagagaaaccttacaaatgtagtgaatgtgac
aaatgctttacccagaaatcccaacttagtattcatcagaaaattcatac
aggagagaaaccttacaaatagattgtatgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_146951157_146952321
seq2: B6Ng01-318D23.b_46_1215

seq1  GAATTCAATCTTTGTTCTTCACAGAGACCCTGGGAGAAGGACAACAACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATCTTTGTTCTTCACAGAGACCCTGGGAGAAGGACAACAACAA  50

seq1  GAATGAGTGAGTCTCTGGTAAATACACCACAGGTCTGTGTCCTTTACACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAGTGAGTCTCTGGTAAATACACCACAGGTCTGTGTCCTTTACACA  100

seq1  TTTCTTTTTTAAAAAAATCTCTTTTTATTCAAGTCATCCAAAAATTTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTTTAAAAAAATCTCTTTTTATTCAAGTCATCCAAAAATTTTAA  150

seq1  TCTCTACATGTGGAATGGTATCTAAAGGGCTTATTTTCTATGATCTATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTACATGTGGAATGGTATCTAAAGGGCTTATTTTCTATGATCTATAT  200

seq1  CTTTTGTAATAATGAGAATTTAATGTTTTTCCCTTTCATGCATATAATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTAATAATGAGAATTTAATGTTTTTCCCTTTCATGCATATAATGG  250

seq1  CTTTATATTTTAACTTGATTTTTATATTGTGAGGATATATAATTCCCTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATATTTTAACTTGATTTTTATATTGTGAGGATATATAATTCCCTTG  300

seq1  GACTAGAGACCTGCATGTCTCAAATAGGATCTATTACAGTGATGCTCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAGAGACCTGCATGTCTCAAATAGGATCTATTACAGTGATGCTCAAA  350

seq1  GAACAGACTGATGGGTATTTTCTATGTTGAATAAGTTCTGTCCTTTTGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGACTGATGGGTATTTTCTATGTTGAATAAGTTCTGTCCTTTTGTA  400

seq1  TTAGTGTGAAGTAAGGTCTCTTGTGCCACATAAATTGCATTTCAGGGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGTGAAGTAAGGTCTCTTGTGCCACATAAATTGCATTTCAGGGATG  450

seq1  GTCAGGTTTCTAAACATAAACTTGTGAATGAGGATATAGAAATAAGTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGTTTCTAAACATAAACTTGTGAATGAGGATATAGAAATAAGTATA  500

seq1  AATTCACATCACTAAAGAAGATATGAAAGAGTAGAATTTGTAGAAGCTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCACATCACTAAAGAAGATATGAAAGAGTAGAATTTGTAGAAGCTAA  550

seq1  AATTATATAAGATCCACTGTTTTGAATCCTAATAGTAAATATATTATTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATATAAGATCCACTGTTTTGAATCCTAATAGTAAATATATTATTAG  600

seq1  CTCCCTAGGGTCACAGATAATGGAAGGAAAATATCTTTCTTTTACCATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTAGGGTCACAGATAATGGAAGGAAAATATCTTTCTTTTACCATTA  650

seq1  GTGTGATTGTGAGATGATACATATTTCAGTATTCTGAAAACACTTTTTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGATTGTGAGATGATACATATTTCAGTATTCTGAAAACACTTTTTTC  700

seq1  ACACCTCATGTCACACAGTAATCACAATTGACACCTGAAATCTATTTATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTCATGTCACACAGTAATCACAATTGACACCTGAAATCTATTTATC  750

seq1  TCAAGAGAGATACTGTCCCTGTGGAAAATTCACAATATATAGTTATTTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAGAGATACTGTCCCTGTGGAAAATTCACAATATATAGTTATTTAT  800

seq1  CCCTCCTTTTGGTTTCAGAAATAATTTTAAGTCCTGTTTTTTTCACCTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCTTTTGGTTTCAGAAATAATTTTAAGTCCTGTTTTTTTCACCTTT  850

seq1  GTATTTCATCACATGAACTATATTAGTAAGATTTTTCTAGAGAGGATAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTCATCACATGAACTATATTAGTAAGATTTTTCTAGAGAGGATAGC  900

seq1  TAT-GGTGCTGTGCATAAACCATCAATTTTCAAAAATAAATGAATGTCCT  949
      ||| ||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TATGGGTGCTGTGCATAAACCATCAATTTTCAAAAAT-AATGAATGTCCT  949

seq1  TTCTTATTTTTT-GTCTCTTTTTCTTTAGAAGGGAAAGGCTTGATACAAT  998
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TTCTTATTTTTTGGTCTCTTTTTCTTTAGAAGGGAAAGGCTTGATACAAT  999

seq1  CTATGCTAATCCTCTTCAGCCAAGCT-GTGTATTACATAGGGAAAAATGA  1047
      |||||||||||||| |||| || ||| |||||||||||||||||||||| 
seq2  CTATGCTAATCCTC-TCAGGCAGGCTGGTGTATTACATAGGGAAAAATGG  1048

seq1  AGGGTTGTGGCAAT-GTTTC-TATTTTT--CATTACGATACTATTTTCTT  1093
      |||| ||||||||| ||||| |||||||   |||||||||||||||||||
seq2  AGGG-TGTGGCAATGGTTTCTTATTTTTTCAATTACGATACTATTTTCTT  1097

seq1  TAAGTACATAA-GTGTATA-TCTGAAAGTTTTTATGTTCACT-GAAT-GA  1139
       | |||||||| | ||||| ||||||  |||||| ||||||| |||| ||
seq2  GAGGTACATAAGGGGTATATTCTGAAGTTTTTTAGGTTCACTGGAATGGA  1147

seq1  TACATTATGCCCCTAAAAC-CACGAGT  1165
      |||  ||||  |||||||| |||||||
seq2  TAC--TATG--CCTAAAACACACGAGT  1170

seq1: chr13_65498169_65498371
seq2: B6Ng01-318D23.g_324_526 (reverse)

seq1  CACATTCATTGCATTTGTAAGGTTTCTCTAAAACGTGTGTTCCTTTAAAT  50
      |||||||| ||||||||||||||||||||      ||  |||  | |   
seq2  CACATTCACTGCATTTGTAAGGTTTCTCTCCTGTATGAATTCTCTGATGA  50

seq1  ATTTAAAGAGTACAGTGACACACAAAGGCTTTAACACATTTATTACAATC  100
      |||   ||| | |  |       ||||  |||  |||||| | |||| | 
seq2  ATTCTCAGACTGCTTTTTTCAGTAAAGCATTTGCCACATTCACTACATTT  100

seq1  ACAGGGCTTCTCTCAACTATGTGCTCATTTATGTACT-TGGAAATGACTA  149
        | || |||||||   ||||   ||  | ||| | | |   | || || 
seq2  GTAAGGTTTCTCTCTTGTATGAATTCTCTGATGAATTATCAGATTGCCTT  150

seq1  TGATATGCAAAGGTTTTCTCATATCAATTACATTCATAAGGTTTCTCTCC  199
      |  || | ||||  ||| ||| ||  | | ||||  ||||||||||||||
seq2  TTGTA-GTAAAGCATTTGTCACATTCACTGCATTTGTAAGGTTTCTCTCC  199

seq1  TGCA  203
      ||||
seq2  TGCA  203