BAC Information

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BAC

Clone NameB6Ng01-318F17
Chromosome13 (Build37)
Map Location 34,469,768 - 34,470,666
singlet/doubletsinglet
Overlap geneLOC620132
Upstream geneOTTMUSG00000000724, Serpinb9g, LOC100041370, EG619715, LOC382743, OTTMUSG00000000712, LOC193403, Vmn2r-ps94, OTTMUSG00000000720, Serpinb6c, Serpinb6a, Nqo2, 4930482L21Rik, Ripk1, Bphl, Tubb2a, LOC100042686, Tubb2b, 2310047M15Rik, 3110004L20Rik
Downstream geneEG666666, 1300014I06Rik, D0H6S2654E, EG432746, LOC666677, Prpf4b, 4933417A18Rik, LOC666697, 1810022C23Rik, Peci
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-318F17.bB6Ng01-318F17.g
ACCGA108270GA108271
length1,178896
definitionB6Ng01-318F17.b B6Ng01-318F17.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaactgaggaatatcgaatggctgaaaagcacctgaaaaaatt
ttcaacatccttaatcattagggaaatgcaaatcaaaacaaccttgagtt
tccacctcacaccagtcagaatggctaaggtcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgctggtg
ggattgcaagcttatacaaccactctggaagtcaatctggtagttcctca
gaacattggacatagtattagcggaagaaccagcaatacctctcctgggc
atatacccagaagatgttccaactggtaataagaacatatactccactat
gttcataccagccttatttataatagccagaagctggaaagaaatcagat
gtccctcaagagaggaatggatacagataatgtggtacatttacacaatg
gggtactactcagctattagaaacaatgaatttatgaaatttttgggcag
gcaaatggatgtatctggaggatatcatccttagtgagataacccaatca
caaaagaagtcattagataagtactcactgataagtggatattagcccag
aaacttaaaatacccaagatacaattggcaaaacacaagaaaatcaagaa
gaaggaagaccatcgtgtggatacttcatttctccttagaatagggaaca
aaatacccatgaaaggagttacagagacaaagcttggagctaagacaaaa
ggatggactatccaaagactaccgcacctggggatccatcccataatcat
tccccaaactcagacactgttgcatatgccagcaagattttgctgaaggg
accctgatgtatttgtctcctatgaggctttgccagtgcctggcaaatac
agaagtggatgctcacagtcatctataagatgggaacacagggtccccca
gtgggagaagctagagaaagcacccaaaggagctgaacggggtctgcaac
cttatagtggaacacaatatgaactaaccaatacccccagagctcatgtc
tctagctgcatatgtagcagaaggatgctattccgtcatcattgggaaag
agccctttggtcttgccaactttatatgccccaagttacaggtaacaccc
aaggtcataggaaacttgggaatgttgg
gaattccacacaatataatttgatcaaatgcaccccttagccttcttctc
cctgaatggccccttccagttcctatgagagcatcagggcatcagggaag
aagttttctggtcagtaccagtttggtttctccatgtcctgtggcatatg
tatgtggcacagtcagcaataaggtctcattaagtttttgtgggcaaaca
gagaaatggcaacagaatttattgttattttgagggggggtcccaggagg
ccattgaccaaaaactggaggggggtatcccacacttggaagtgggcttt
ctattggccactcgtggggtccggaatgagctcactcccctatggagggc
aactgcaattaagctcttttatatgaaaaaagaatatgtgcacattcaag
gagttcctaaaatgacaggtttccatatgactttttcaaacattcctagt
attagttatctgtaatgcaaccctctcctttgccttagactctcatcgct
ttccccttaaacttctctcccatcattcagctatcccttgcatgtcaatt
tgtgctaatatctccccttctcttaagatgtttttcttcttcccacccat
gattcccttgagtttttttttttttttttgattctataggtactccagat
aaacatacaaatcaacaaatcaaaggttctatgctaggatccacatatga
gtgagaacatgtgatgtttgtgtttctggatctgggttactctactccct
ggtgattttataaagagaggaagaattgtagagatgaataactgagatga
acaactctatgctatgatgtgatacaaatgtgcaaaatgtgcatgagtgt
gtgcgtgtgtgtgagtaagagagaaagagaggggtgggggggtggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_34469768_34470666
seq2: B6Ng01-318F17.g_65_960

seq1  GAATTCCACACAATATAATTTGATCAAATGCACCCCTTAGCCTTCTTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACACAATATAATTTGATCAAATGCACCCCTTAGCCTTCTTCTC  50

seq1  CCTGAATGGCCCCTTCCAGTTCCTATGAGAGCATCAGGGCATCAGGGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAATGGCCCCTTCCAGTTCCTATGAGAGCATCAGGGCATCAGGGAAG  100

seq1  AAGTTTTCTGGTCAGTACCAGTTTGGTTTCTCCATGTCCTGTGGCATATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTCTGGTCAGTACCAGTTTGGTTTCTCCATGTCCTGTGGCATATG  150

seq1  TATGTGGCACAGTCAGCAATAAGGTCTCATTAAGTTTTTGTGGGCAAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGGCACAGTCAGCAATAAGGTCTCATTAAGTTTTTGTGGGCAAACA  200

seq1  GAGAAATGGCAACAGAATTTATTGTTATTTTGAGGGGGGGTCCCAGGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAATGGCAACAGAATTTATTGTTATTTTGAGGGGGGGTCCCAGGAGG  250

seq1  CCATTGACCAAAAACTGGAGGGGGGTATCCCACACTTGGAAGTGGGCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGACCAAAAACTGGAGGGGGGTATCCCACACTTGGAAGTGGGCTTT  300

seq1  CTATTGGCCACTCGTGGGGTCCGGAATGAGCTCACTCCCCTATGGAGGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGGCCACTCGTGGGGTCCGGAATGAGCTCACTCCCCTATGGAGGGC  350

seq1  AACTGCAATTAAGCTCTTTTATATGAAAAAAGAATATGTGCACATTCAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCAATTAAGCTCTTTTATATGAAAAAAGAATATGTGCACATTCAAG  400

seq1  GAGTTCCTAAAATGACAGGTTTCCATATGACTTTTTCAAACATTCCTAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCCTAAAATGACAGGTTTCCATATGACTTTTTCAAACATTCCTAGT  450

seq1  ATTAGTTATCTGTAATGCAACCCTCTCCTTTGCCTTAGACTCTCATCGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTTATCTGTAATGCAACCCTCTCCTTTGCCTTAGACTCTCATCGCT  500

seq1  TTCCCCTTAAACTTCTCTCCCATCATTCAGCTATCCCTTGCATGTCAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCTTAAACTTCTCTCCCATCATTCAGCTATCCCTTGCATGTCAATT  550

seq1  TGTGCTAATATCTCCCCTTCTCTTAAGATGTTTTTCTTCTTCCCACCCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTAATATCTCCCCTTCTCTTAAGATGTTTTTCTTCTTCCCACCCAT  600

seq1  GATTCCCTTGAGTTTTTTTTTTTTTTTTTGATTCTATAGGTACTCCAGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCCTTGAGTTTTTTTTTTTTTTTTTGATTCTATAGGTACTCCAGAT  650

seq1  AAACATACAAATCAACAAATCAAAGGTTCTATGCTAGGATCCACATATGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATACAAATCAACAAATCAAAGGTTCTATGCTAGGATCCACATATGA  700

seq1  GTGAGAACATGTGATGTTTGTGTTTCTGGATCTGGGTTACTCTACTCCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAACATGTGATGTTTGTGTTTCTGGATCTGGGTTACTCTACTCCCT  750

seq1  GGTGATTTTATAAAGAGAGGAAGAATTGTAGAGATGAATAACTGAGATGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATTTTATAAAGAGAGGAAGAATTGTAGAGATGAATAACTGAGATGA  800

seq1  ACAACTCTATGCTATGATGTGATACAAATGTGCAAAATGTGCATGAGTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTCTATGCTATGATGTGATACAAATGTGCAAAATGTGCATGAGTGT  850

seq1  GTGCGTGTGTGTGAGTAAGAGAGAAAGAGAGGGTGGGGGTGGGGGTGGG  899
      |||||||||||||||||||||||||||||||   ||| | |||||||||
seq2  GTGCGTGTGTGTGAGTAAGAGAGAAAGAGAG---GGGTGGGGGGGTGGG  896