BAC Information

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BAC

Clone NameB6Ng01-318M05
Chromosome13 (Build37)
Map Location 65,562,261 - 65,563,170
singlet/doubletsinglet
Overlap geneLOC665777
Upstream gene1190003K10Rik, LOC218298, Ppia-ps13_866.1, LOC238678, LOC631470, Cntnap3, EG432767, 4930458L03Rik, LOC218301, LOC628515, 4932441B19Rik, Gm274, Hiatl1, LOC100042311, Olfr465-ps1, Olfr466, Nlrp4f, ENSMUSG00000074847, Zfp369, LOC100042347, LOC100042341, LOC665738, EG665742, LOC665750, LOC665753, EG544944, EG665767
Downstream geneEG628648, LOC665809, LOC100042404, LOC628722, LOC665851, Vmn2r-ps99, LOC628794, EG665897, LOC100041855, EG628746, LOC100042434, LOC100041892, EG665974, LOC100041915, 2410141K09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-318M05.bB6Ng01-318M05.g
ACCGA108567GA108568
length1,151910
definitionB6Ng01-318M05.b B6Ng01-318M05.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcacaactgagagttctgaatggctgtgaagcacctaaataaatgt
tcaacatccttaatcatcaggggaatgcaaatcaaaacaaccctgagatt
ccacctcacaccagtcagaatggctaagatcaaaaactcatgtgatagca
gatgtggcgaggatgtggagaaagaggaacactcctacattggtggtggg
attgcaagcttgtacaaccactctggaagtcagtttggcagttcctcaga
aaattagacatagtattaccaattgatccagcaataactctcctgggcat
atacccagaagatgttccaacttgtaataaggacacatgctccactatgt
tcattgcagccttatataataatagccagaagtggaaagaacccagagga
atggatacagaaaatgtggtacttttacacaattaagtactactactcag
ctattaaaaacaatgaatttatgaaattcttaggcaaatggatgtatatg
gaggatatcatcctgagtgaggtaacccaatcacaaaagagcacacatga
tatgcactcactgataagtggatattagcccagaaacttagactactgtc
ttagtcagggtatctattcctgcacaaacatcatgaccaagaagcaagtt
ggggaggaaagggtttattcggcttatacttccatgctgctgttcatcac
caaaggaagtcaggactggaactcaagcaggtcagggagcaggagctgat
gcagaggccatggagggatgttctttactggcttgccctcctggcttgct
cagcctgctctcttataaaaccaagactaccagcccagagatggtcccac
ccacaaggggcatttcccccttgatcactaattgagaaaatgccttacag
ttggatctcatggaggcatttcctcaactgaagctccttctctgtggtac
tccagctgtgtcaagttgacacaaactagccagtacaattgaccccttgt
caacctgacaccacaaacacatcacctagtaagcctcaacccttattctt
atcattcccaggatctaacagcttaaagtcccacagttcctaacaattaa
gtcaatccctcagttccaatcttctgaatccagccttttaccattaagac
t
gaattcacctttaaaaaataggacccagggctggagagatggctcagcgg
ttaagagacctgactgctctcccgaagattctgagttcaagtcccagcaa
ccacatggtggctcaaaaccatacatagtgagatctgacgacctcatctg
gtgtgtctgaagacagctacagtgaacttacatatagcaataaataaatc
ttaaaaaaaaaaaaaaaggacccaggagggatggggtgaagaacttgggg
agggaaccagaaaggggggcaacatttggaatgtaaataaataaataatt
tacttaaaataaaagaaaattaggatccagtgaaagccaggcatggtggc
acaaacctctaattccattgcttgggagataggggcaagcagatctctgt
gagtttgaagcccagcttggttacatagtatgttccacagctgcatatgg
aggccctgtctccaaccaaaccagccaaccaaccaaccagccatacagga
tatgtggccaatgagatagctctgggagtagagtactgtcagacctgagg
aaaaaaacattctcataactttctgcttaaatgcaagctgtgcccaagga
actgaccagacaactgattgcctcctgctaagttggagtttcaaagaaca
gccccttactggcttttgaggtcccctttatgggggtgggttagggttga
tagaaaacagctgttgagatagttggctgttagcacctgaacagaagaat
aggggactcaggcctcaagctgcctaagtcttagataagtgcaggaatac
ttcatatggaatggggggtcaccacagggtatcaggagttaagcaatgca
aggggttgggtacacatcatcaggtgacaaattagtatgaggttgaaata
catgcttgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_65562261_65563170
seq2: B6Ng01-318M05.g_64_973 (reverse)

seq1  TGCAAGCAATGTTTTTCAACCT-ATACTGAATTTGTCACCTGATGATGTG  49
      ||||||| |||| ||||||||| ||||| |||||||||||||||||||||
seq2  TGCAAGC-ATGTATTTCAACCTCATACT-AATTTGTCACCTGATGATGTG  48

seq1  TACCCACCCCTTTGCCTTGCTAAACTCCTGA-ACCCTGTGGTGA-CCCCC  97
      |||||| ||| |||| ||||| ||||||||| |||||||||||| |||||
seq2  TACCCAACCCCTTGCATTGCTTAACTCCTGATACCCTGTGGTGACCCCCC  98

seq1  ATTCCATATGAAGTATTCCTGCACTTATCTAAGACTTAGGCAGCCTTGAG  147
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ATTCCATATGAAGTATTCCTGCACTTATCTAAGACTTAGGCAG-CTTGAG  147

seq1  GCCTGAGTCCCCTATTCTTCTGTTCAGGTGCTAACAGCCAACTATCTCAA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGAGTCCCCTATTCTTCTGTTCAGGTGCTAACAGCCAACTATCTCAA  197

seq1  CAGCTGTTTTCTATCAACCCTAACCCACCCCCATAAAGGGGACCTCAAAA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGTTTTCTATCAACCCTAACCCACCCCCATAAAGGGGACCTCAAAA  247

seq1  GCCAGTAAGGGGCTGTTCTTTGAAACTCCAACTTAGCAGGAGGCAATCAG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTAAGGGGCTGTTCTTTGAAACTCCAACTTAGCAGGAGGCAATCAG  297

seq1  TTGTCTGGTCAGTTCCTTGGGCACAGCTTGCATTTAAGCAGAAAGTTATG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTGGTCAGTTCCTTGGGCACAGCTTGCATTTAAGCAGAAAGTTATG  347

seq1  AGAATGTTTTTTTCCTCAGGTCTGACAGTACTCTACTCCCAGAGCTATCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGTTTTTTTCCTCAGGTCTGACAGTACTCTACTCCCAGAGCTATCT  397

seq1  CATTGGCCACATATCCTGTATGGCTGGTTGGTTGGTTGGCTGGTTTGGTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGCCACATATCCTGTATGGCTGGTTGGTTGGTTGGCTGGTTTGGTT  447

seq1  GGAGACAGGGCCTCCATATGCAGCTGTGGAACATACTATGTAACCAAGCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACAGGGCCTCCATATGCAGCTGTGGAACATACTATGTAACCAAGCT  497

seq1  GGGCTTCAAACTCACAGAGATCTGCTTGCCCCTATCTCCCAAGCAATGGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTCAAACTCACAGAGATCTGCTTGCCCCTATCTCCCAAGCAATGGA  547

seq1  ATTAGAGGTTTGTGCCACCATGCCTGGCTTTCACTGGATCCTAATTTTCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAGGTTTGTGCCACCATGCCTGGCTTTCACTGGATCCTAATTTTCT  597

seq1  TTTATTTTAAGTAAATTATTTATTTATTTACATTCCAAATGTTGCCCCCC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTAAGTAAATTATTTATTTATTTACATTCCAAATGTTGCCCCCC  647

seq1  TTTCTGGTTCCCTCCCCAAGTTCTTCACCCCATCCCTCCTGGGTCCTTTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGGTTCCCTCCCCAAGTTCTTCACCCCATCCCTCCTGGGTCCTTTT  697

seq1  TTTTTTTTTTTAAGATTTATTTATTGCTATATGTAAGTTCACTGTAGCTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTAAGATTTATTTATTGCTATATGTAAGTTCACTGTAGCTG  747

seq1  TCTTCAGACACACCAGATGAGGTCGTCAGATCTCACTATGTATGGTTTTG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAGACACACCAGATGAGGTCGTCAGATCTCACTATGTATGGTTTTG  797

seq1  AGCCACCATGTGGTTGCTGGGACTTGAACTCAGAATCTTCGGGAGAGCAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACCATGTGGTTGCTGGGACTTGAACTCAGAATCTTCGGGAGAGCAG  847

seq1  TCAGGTCTCTTAACCGCTGAGCCATCTCTCCAGCCCTGGGTCCTATTTTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTCTCTTAACCGCTGAGCCATCTCTCCAGCCCTGGGTCCTATTTTT  897

seq1  TAAAGGTGAATTC  910
      |||||||||||||
seq2  TAAAGGTGAATTC  910