BAC Information

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BAC

Clone NameB6Ng01-319A14
Chromosome13 (Build37)
Map Location 59,512,717 - 59,647,641
singlet/doubletdoublet
Overlap geneAgtpbp1
Upstream geneLOC100041086, Slc28a3, LOC100041510, LOC435361, Ntrk2, LOC100041533
Downstream geneMak10, Golph2, 4921517D22Rik, 1700013B16Rik, EG238662, 4932411G14Rik, Isca1, Zcchc6, LOC100041267, Gas1, EG328264
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-319A14.bB6Ng01-319A14.g
ACCGA108771GA108772
length1,1671,119
definitionB6Ng01-319A14.b B6Ng01-319A14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,512,717 - 59,513,895)(59,646,525 - 59,647,641)
sequence
gaattctgggccatcagatgtgaaggcggagtagaagtctaatagcaaag
aacagaacagccagggaccccgggaggaaagtggccttgtgtatacacac
tggtgtggggagccgccctcacatttgctattataagatggcgctgacag
ctgtgttctaagtggtaaacataatctgcacacgtgcaggggcagttttc
ccgccatgtgttctgcctttctcgtgatgacaactgggccgatgggctgc
agccaatcagggagtaatacgtcctaggcggaggataattctccttaaaa
gggacggggttttgccatgttttttctctctcttgctcatgctttttctc
tctcttgttcttgctttttctctctcttctcttgctttcttgttcttgtt
ctttttcttgctttctttctctctcttgctctgactcttgctctggctct
tgctctctggctcctgaagatgtaagcaataaagcttttgccgcagaaga
ttctggtttgctgcgttcttcctggccggtcgcgagaacgcgtttaagac
actgggtagtttccatgggcttctctctcctgtcttggttaactggtttt
taaatgcaaagatttcagaagctctagggaaaagactgttaagaagaaag
aaagctagttgattgtgtctgggcttgtctgcacataaatagttgtagaa
atgccttttcttgaaaggtggcttagttaggggttcattgcggtgaatag
acaccataaccatgtcaactcttataaaggaaaatacttaactgaggttg
gcttatggttcagaggtttagtctattacggtcatggtcagaagcatggt
ggtacacaggcagacatggtgctggagaggtagctgagagttctacatct
ggatccataggcagcagcaaaagacagtcagtcactgggcctggcttgag
ctccttaaccctcgaagcctaccccaagtgacacatttcctccaacaggc
cacaccacaccaacagcaccatacctcctatggtgctactccctacagac
tatgggcccatattcatccaactctcacaaaagttaaaatacagacttgg
tgtttaatgcctttcaacagcgaatctaacgttagatatggaattgttcc
ggtggtattattctata
tttggtgaggttcaggccagctggagtgctttgggggacttcatctcagg
aaacagaaaccagaaggttactggctttccattggatgtgctgctaacac
agttttaaggaacactttgcttacttgctttagaggcagggtctttcgat
ctatctgtgctgagtgctgggattgcaggttctcctggttagtcagggtg
gtgcaagctctgcctggagttacccgagcctcaccctccagccctgggtg
caggctctgcctggagttaactgagccataccctccagccctggctctgc
ctggagttaactgagtcttaaccctctagccctgggtcgtttctactggt
ttgagacaaggtctgctacctcaggctgactttgacctctatgtgacagg
gtctggaacaccgtactatgtctgtctccgagtgctgggattgtgagcca
tttgtgtccccacgtctagctttaagctggccaggacagactctgcttag
ggcagtgataggaactttgaaagctcatatgaggtttcctgccacctttc
tgtgtgtgatgtcttatttatcttggaaattgacttcatgtagttaacaa
cctagagaaaaagcttaactaaaggaaaaaagtgcgatttcaaatttgtc
aacgaccttaagaacagtccacatggttttttatatcataaatatatatg
catatatacatatatatttaacagagattgaaaagacataatttgtatct
attaaataaaacattaaaatcttactttttgcatgttttctttaaagtgt
tgtatcactaaacatgtataaatgtgattagtgatgtgacaaaattgggt
tttactaaacattggtatataaaatccatgatatttattttttcctgaac
tagttttaaagtacaacctgaaaattaaaaaattgcaagtcagatggaag
ttgtttaaatgctgtaataggactttataaaaattagaaacattgactgt
ggttatgcttggcaagcccctggactatgttcaacacttgtttttcataa
aacgttgcttacattagaaatgcatctaccagtttggtgctactggtgtg
aaacgggttcaagcttctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_59512717_59513895
seq2: B6Ng01-319A14.b_48_1214

seq1  GAATTCTGGGCCATCAGATGTGAAGGCGGAGTAGAAGTCTAATAGCAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGCCATCAGATGTGAAGGCGGAGTAGAAGTCTAATAGCAAAG  50

seq1  AACAGAACAGCCAGGGACCCCGGGAGGAAAGTGGCCTTGTGTATACACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAACAGCCAGGGACCCCGGGAGGAAAGTGGCCTTGTGTATACACAC  100

seq1  TGGTGTGGGGAGCCGCCCTCACATTTGCTATTATAAGATGGCGCTGACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTGGGGAGCCGCCCTCACATTTGCTATTATAAGATGGCGCTGACAG  150

seq1  CTGTGTTCTAAGTGGTAAACATAATCTGCACACGTGCAGGGGCAGTTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTTCTAAGTGGTAAACATAATCTGCACACGTGCAGGGGCAGTTTTC  200

seq1  CCGCCATGTGTTCTGCCTTTCTCGTGATGACAACTGGGCCGATGGGCTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCATGTGTTCTGCCTTTCTCGTGATGACAACTGGGCCGATGGGCTGC  250

seq1  AGCCAATCAGGGAGTAATACGTCCTAGGCGGAGGATAATTCTCCTTAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAATCAGGGAGTAATACGTCCTAGGCGGAGGATAATTCTCCTTAAAA  300

seq1  GGGACGGGGTTTTGCCATGTTTTTTCTCTCTCTTGCTCATGCTTTTTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACGGGGTTTTGCCATGTTTTTTCTCTCTCTTGCTCATGCTTTTTCTC  350

seq1  TCTCTTGTTCTTGCTTTTTCTCTCTCTTCTCTTGCTTTCTTGTTCTTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTGTTCTTGCTTTTTCTCTCTCTTCTCTTGCTTTCTTGTTCTTGTT  400

seq1  CTTTTTCTTGCTTTCTTTCTCTCTCTTGCTCTGACTCTTGCTCTGGCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCTTGCTTTCTTTCTCTCTCTTGCTCTGACTCTTGCTCTGGCTCT  450

seq1  TGCTCTCTGGCTCCTGAAGATGTAAGCAATAAAGCTTTTGCCGCAGAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTCTGGCTCCTGAAGATGTAAGCAATAAAGCTTTTGCCGCAGAAGA  500

seq1  TTCTGGTTTGCTGCGTTCTTCCTGGCCGGTCGCGAGAACGCGTTTAAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGTTTGCTGCGTTCTTCCTGGCCGGTCGCGAGAACGCGTTTAAGAC  550

seq1  ACTGGGTAGTTTCCATGGGCTTCTCTCTCCTGTCTTGGTTAACTGGTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGTAGTTTCCATGGGCTTCTCTCTCCTGTCTTGGTTAACTGGTTTT  600

seq1  TAAATGCAAAGATTTCAGAAGCTCTAGGGAAAAGACTGTTAAGAAGAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGCAAAGATTTCAGAAGCTCTAGGGAAAAGACTGTTAAGAAGAAAG  650

seq1  AAAGCTAGTTGATTGTGTCTGGGCTTGTCTGCACATAAATAGTTGTAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTAGTTGATTGTGTCTGGGCTTGTCTGCACATAAATAGTTGTAGAA  700

seq1  ATGCCTTTTCTTGAAAGGTGGCTTAGTTAGGGGTTCATTGCGGTGAATAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTTTTCTTGAAAGGTGGCTTAGTTAGGGGTTCATTGCGGTGAATAG  750

seq1  ACACCATAACCATGTCAACTCTTATAAAGGAAAATACTTAACTGAGGTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCATAACCATGTCAACTCTTATAAAGGAAAATACTTAACTGAGGTTG  800

seq1  GCTTATGGTTCAGAGGTTTAGTCTATTACGGTCATGGTCAGAAGCATGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATGGTTCAGAGGTTTAGTCTATTACGGTCATGGTCAGAAGCATGGT  850

seq1  GGTACACAGGCAGACATGGTGCTGGAGAGGTAGCTGAGAGTTCTACATCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACACAGGCAGACATGGTGCTGGAGAGGTAGCTGAGAGTTCTACATCT  900

seq1  GGATCCATAGGCAGCAGCAAAAGACAGTCAGTCACTGGGCCTGGCTTGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCATAGGCAGCAGCAAAAGACAGTCAGTCACTGGGCCTGGCTTGAG  950

seq1  CTCCTTAACCCTCGAAGCCTACCCCAAGTGACACATTTCCTCCAACAAGG  1000
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CTCCTTAACCCTCGAAGCCTACCCCAAGTGACACATTTCCTCCAAC-AGG  999

seq1  CCACACCAACACCAACAGCACCATACCTCCTAATGGTGCTACTCCCTACA  1050
      ||||||| ||||||||||||||||||||||| ||||||||||||||||||
seq2  CCACACC-ACACCAACAGCACCATACCTCCT-ATGGTGCTACTCCCTACA  1047

seq1  GACCTATGGGGCCATATTCATCCAAACTCTCACAAAAGGTAAAATACAGG  1100
      || ||||||| |||||||||||| |||||||||||||| |||||||||| 
seq2  GA-CTATGGGCCCATATTCATCC-AACTCTCACAAAAGTTAAAATACAGA  1095

seq1  ACTGGTGTTTATTGCTTTTCAAAACCAGCCGAATACTAAGGTAAGATAAT  1150
        ||||||||| ||| ||||||   ||| ||||| |||| || |||| ||
seq2  CTTGGTGTTTAATGCCTTTCAA---CAG-CGAAT-CTAACGTTAGAT-AT  1139

seq1  GGTACTGTCCGTGTGTGTATTATTCTATA  1179
      || | ||| |  ||| |||||||||||||
seq2  GGAATTGTTCCGGTG-GTATTATTCTATA  1167

seq1: chr13_59646525_59647641
seq2: B6Ng01-319A14.g_80_1198 (reverse)

seq1  GAGAAGCT--GACACTGTTCACA-CAGTAGCA-CAAACTGGTAGATGCAT  46
      ||||||||   || |  |||||| |||||||| |||||||||||||||||
seq2  GAGAAGCTTGAACCCGTTTCACACCAGTAGCACCAAACTGGTAGATGCAT  50

seq1  TTCTATATGAAAGC-ACGTTTTATGAAAAACAAGTTGTTGAACATAGTCC  95
      ||||| ||| |||| ||||||||||||||||||| |||||||||||||||
seq2  TTCTA-ATGTAAGCAACGTTTTATGAAAAACAAG-TGTTGAACATAGTCC  98

seq1  AGGGGCTTGCCAAGCATAACCACAGTCAATG-TTCTAATTTTTATAAAGT  144
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AGGGGCTTGCCAAGCATAACCACAGTCAATGTTTCTAATTTTTATAAAGT  148

seq1  CCTTATTACAGCATTTAAACAACCTTCCATCTTGACTTGCAATTTTTTAA  194
      || ||||||||||||||||||| |||||||| ||||||||||||||||||
seq2  CC-TATTACAGCATTTAAACAA-CTTCCATC-TGACTTGCAATTTTTTAA  195

seq1  TTTTCAGGTTGTACTTTAAAACTAGTTCAGG-AAAAATAAATATCATGGA  243
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TTTTCAGGTTGTACTTTAAAACTAGTTCAGGAAAAAATAAATATCATGGA  245

seq1  TTTTATATACCAATGTTTAGTAAAACCCAATTTTGTCACATCACTAATCA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATATACCAATGTTTAGTAAAACCCAATTTTGTCACATCACTAATCA  295

seq1  CATTTATACATGTTTAGTGATACAACACTTTAAAGAAAACATGCAAAAAG  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATACATGTTTAGTGATACAACACTTTAAAGAAAACATGCAAAAAG  345

seq1  TAAGATTTTAATGTTTTATTTAATAGATACAAATTATGTCTTTTCAATCT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATTTTAATGTTTTATTTAATAGATACAAATTATGTCTTTTCAATCT  395

seq1  CTGTTAAATATATATGTATATATGCATATATATTTATGATATAAAAAACC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTAAATATATATGTATATATGCATATATATTTATGATATAAAAAACC  445

seq1  ATGTGGACTGTTCTTAAGGTCGTTGACAAATTTGAAATCGCACTTTTTTC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGACTGTTCTTAAGGTCGTTGACAAATTTGAAATCGCACTTTTTTC  495

seq1  CTTTAGTTAAGCTTTTTCTCTAGGTTGTTAACTACATGAAGTCAATTTCC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGTTAAGCTTTTTCTCTAGGTTGTTAACTACATGAAGTCAATTTCC  545

seq1  AAGATAAATAAGACATCACACACAGAAAGGTGGCAGGAAACCTCATATGA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAAATAAGACATCACACACAGAAAGGTGGCAGGAAACCTCATATGA  595

seq1  GCTTTCAAAGTTCCTATCACTGCCCTAAGCAGAGTCTGTCCTGGCCAGCT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCAAAGTTCCTATCACTGCCCTAAGCAGAGTCTGTCCTGGCCAGCT  645

seq1  TAAAGCTAGACGTGGGGACACAAATGGCTCACAATCCCAGCACTCGGAGA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCTAGACGTGGGGACACAAATGGCTCACAATCCCAGCACTCGGAGA  695

seq1  CAGACATAGTACGGTGTTCCAGACCCTGTCACATAGAGGTCAAAGTCAGC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACATAGTACGGTGTTCCAGACCCTGTCACATAGAGGTCAAAGTCAGC  745

seq1  CTGAGGTAGCAGACCTTGTCTCAAACCAGTAGAAACGACCCAGGGCTAGA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGTAGCAGACCTTGTCTCAAACCAGTAGAAACGACCCAGGGCTAGA  795

seq1  GGGTTAAGACTCAGTTAACTCCAGGCAGAGCCAGGGCTGGAGGGTATGGC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTAAGACTCAGTTAACTCCAGGCAGAGCCAGGGCTGGAGGGTATGGC  845

seq1  TCAGTTAACTCCAGGCAGAGCCTGCACCCAGGGCTGGAGGGTGAGGCTCG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTAACTCCAGGCAGAGCCTGCACCCAGGGCTGGAGGGTGAGGCTCG  895

seq1  GGTAACTCCAGGCAGAGCTTGCACCACCCTGACTAACCAGGAGAACCTGC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAACTCCAGGCAGAGCTTGCACCACCCTGACTAACCAGGAGAACCTGC  945

seq1  AATCCCAGCACTCAGCACAGATAGATCGAAAGACCCTGCCTCTAAAGCAA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCAGCACTCAGCACAGATAGATCGAAAGACCCTGCCTCTAAAGCAA  995

seq1  GTAAGCAAAGTGTTCCTTAAAACTGTGTTAGCAGCACATCCAATGGAAAG  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCAAAGTGTTCCTTAAAACTGTGTTAGCAGCACATCCAATGGAAAG  1045

seq1  CCAGTAACCTTCTGGTTTCTGTTTCCTGAGATGAAGTCCCCCAAAGCACT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTAACCTTCTGGTTTCTGTTTCCTGAGATGAAGTCCCCCAAAGCACT  1095

seq1  CCAGCTGGCCTGAACCTCACCAAA  1117
      ||||||||||||||||||||||||
seq2  CCAGCTGGCCTGAACCTCACCAAA  1119