BAC Information

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BAC

Clone NameB6Ng01-319C01
Chromosome4 (Build37)13 (Build37)
Map Location 86,728,394 - 86,729,29668,215,234 - 68,215,985
singlet/doubletsingletsinglet
Overlap geneSlc24a2
Upstream geneAdamtsl1, 4930500O09Rik, Rraga, 6230416J20Rik, LOC100040388, Adfp, EG624685, Dennd4c, Rps6, Asah3l
Downstream geneMllt3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-319C01.bB6Ng01-319C01.g
ACCGA108839GA108840
length1,105886
definitionB6Ng01-319C01.b B6Ng01-319C01.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(86,728,394 - 86,729,296)(68,215,234 - 68,215,985)
sequence
gaattctttgtttagctctgttaatagggttatttgattcactggagtct
ggaggagtactcttggctccagctgcatatgtatgacgagatggccttgt
cagtcatcaaaggaaggagaggtccttggtcctatgaaggctggatagat
gacccagtatagggaaatccaggacggtgaggttggagtggatgggtggg
tggagattcgacacccatgtccttctaaatagacaggatctgctcctggc
cacagggtgagtgaggccaccagacaaccccaattcctacctgttgctga
gttattgagtcctgacacaagtcaagttgatgtataaagaaaggcatttg
cacctattacattgtgaaggtcataaaagtatctctatgaccctccagaa
acagaagttacattttaaaacactgtggcagttgtgaatgagtctaaatt
acaattctggaagagacaaatgaccagaaaattaatctctatactttctc
tactctcaagcacttgatcacaattcccaacaaaacaaatgtgtacataa
tgaatacaaataaaatctgtcatcataaattcccaacaattgcttggcat
catctggctttcattagaagtccaagttcataaatggtttttaatatttt
cgtggcatttggagctttgttggttgctgctttcttcccacgggttactg
taaagaaaatttcacttccttgttttccaacactgaagaaacaccccaga
gcccagctatctgagctcagatcacagctttgccatgggaccttggacaa
acccacccagcccctatcagtctcaggatctttatgtagaatgagagata
gaagtgattataacatccattattttaatgattcagtaaggtatttcata
tacatttgggctttccatgaactgcaccctgatttgcctacatatctttt
gtccagcattagtattttaatgaatttaaacagaaatcagagctggggaa
ttgactcgtaaagtgcttgctacacagcattggagactgggctgggatcc
cacaaccacatttgactcaaggaatatgccagcttgccacaccagcactg
ggggc
gaattccatcctttgataagtttaacataaaaggttctggatataggggc
tgtaaattatggaatgaatgacagtcctgggaaagcgggggaaaggttga
tgaaatagcacagtggctgaaacaggaggaccagagtgcactcccagaag
tcacaaagggtcatgagggggggacattattcttgaaattacagttggaa
ttccagcctcagaaagaaaaggcaagtggtgtggtccctaggataagctg
gctaaaaagtctaggtcatatcagtgagtcagaccgttattttttttaat
tgtatactttctttattttcatttcaaatgttacccactttcccagtttc
cccctatcccatcctccctccccctgattctatgagggtgttcctccact
caaccacccactccaacctctctgccttagatttacctatactgcggcat
ctatccagccttcataggaccaaggacctctccttccattgatgcctgac
aaggccattctctgctacatatgcagctggatccaagtgtactccgcaag
aatcccgaaaatcaaataaccctattaacagagctaaacaaagaagcctc
aactgaggaatattgaatggcctagaagcactaaagaaaagttcagcatc
cttagtcatcagggaaatgcaaatcaaactgaaagacccgagaggagctc
ctcactcaggcctcaggacaattctggacccccaagaactcatgagagac
caagcttgatgtaaacaacatgaggctttattcagggaaatcctgacgct
ggggatgactcatatcccacacagggatagaggagacgaccgagagagga
aaggggtcccagtttttataggccctctggggggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_86728394_86729296
seq2: B6Ng01-319C01.b_245_1146 (reverse)

seq1  GCCCCCAGTGCTGGTGT-GCAGGCTGCCATATTCCT---GGCTCATGTGG  46
      ||||||||||||||||| ||| |||| |||||||||   | |  ||||||
seq2  GCCCCCAGTGCTGGTGTGGCAAGCTGGCATATTCCTTGAGTCAAATGTGG  50

seq1  GTGTTGGGGATCCAAACCCAGGTCTCC-ATGCTTGTGTAGCAAGCACTTT  95
       |||  ||||||| | |||| |||||| |||| |||||||||||||||||
seq2  TTGT--GGGATCCCAGCCCA-GTCTCCAATGC-TGTGTAGCAAGCACTTT  96

seq1  ACCGAGTCATTTCCCCAGCTCTGATTTCTGTTTTAAATTCATT-AAATAC  144
      | ||||||| |||||||||||||||||||| |||||||||||| ||||||
seq2  A-CGAGTCAATTCCCCAGCTCTGATTTCTG-TTTAAATTCATTAAAATAC  144

seq1  TAATGCTGGACAAAAGATATGTTAGGCAAATCAGGGTGCAGTTCATGGAA  194
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TAATGCTGGACAAAAGATATG-TAGGCAAATCAGGGTGCAGTTCATGGAA  193

seq1  AGCCCAAATGTATATGAAATACCTTACTGAATCATTAAAATAATGGATGT  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAAATGTATATGAAATACCTTACTGAATCATTAAAATAATGGATGT  243

seq1  TATAATCACTTCTATCTCTCATTCTACATAAAGATCCTGAGACTGATAGG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATCACTTCTATCTCTCATTCTACATAAAGATCCTGAGACTGATAGG  293

seq1  GGCTGGGTGGGTTTGTCCAAGGTCCCATGGCAAAGCTGTGATCTGAGCTC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGGTGGGTTTGTCCAAGGTCCCATGGCAAAGCTGTGATCTGAGCTC  343

seq1  AGATAGCTGGGCTCTGGGGTGTTTCTTCAGTGTTGGAAAACAAGGAAGTG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGCTGGGCTCTGGGGTGTTTCTTCAGTGTTGGAAAACAAGGAAGTG  393

seq1  AAATTTTCTTTACAGTAACCCGTGGGAAGAAAGCAGCAACCAACAAAGCT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTCTTTACAGTAACCCGTGGGAAGAAAGCAGCAACCAACAAAGCT  443

seq1  CCAAATGCCACGAAAATATTAAAAACCATTTATGAACTTGGACTTCTAAT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATGCCACGAAAATATTAAAAACCATTTATGAACTTGGACTTCTAAT  493

seq1  GAAAGCCAGATGATGCCAAGCAATTGTTGGGAATTTATGATGACAGATTT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCCAGATGATGCCAAGCAATTGTTGGGAATTTATGATGACAGATTT  543

seq1  TATTTGTATTCATTATGTACACATTTGTTTTGTTGGGAATTGTGATCAAG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTATTCATTATGTACACATTTGTTTTGTTGGGAATTGTGATCAAG  593

seq1  TGCTTGAGAGTAGAGAAAGTATAGAGATTAATTTTCTGGTCATTTGTCTC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGAGAGTAGAGAAAGTATAGAGATTAATTTTCTGGTCATTTGTCTC  643

seq1  TTCCAGAATTGTAATTTAGACTCATTCACAACTGCCACAGTGTTTTAAAA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGAATTGTAATTTAGACTCATTCACAACTGCCACAGTGTTTTAAAA  693

seq1  TGTAACTTCTGTTTCTGGAGGGTCATAGAGATACTTTTATGACCTTCACA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACTTCTGTTTCTGGAGGGTCATAGAGATACTTTTATGACCTTCACA  743

seq1  ATGTAATAGGTGCAAATGCCTTTCTTTATACATCAACTTGACTTGTGTCA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAATAGGTGCAAATGCCTTTCTTTATACATCAACTTGACTTGTGTCA  793

seq1  GGACTCAATAACTCAGCAACAGGTAGGAATTGGGGTTGTCTGGTGGCCTC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCAATAACTCAGCAACAGGTAGGAATTGGGGTTGTCTGGTGGCCTC  843

seq1  ACTCACCCTGTGGCCAGGAGCAGATCCTGTCTATTTAGAAGGACATGGGT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACCCTGTGGCCAGGAGCAGATCCTGTCTATTTAGAAGGACATGGGT  893

seq1  GTCGAATCT  903
      |||||||||
seq2  GTCGAATCT  902

seq1: chr13_68215234_68215985
seq2: B6Ng01-319C01.g_90_842

seq1  AACATAAAAGGTTCTGGATACAGGGGCTACAAATAATGGAAGGAATGAGA  50
      |||||||||||||||||||| |||||||  |||| |||||| |||||| |
seq2  AACATAAAAGGTTCTGGATATAGGGGCTGTAAATTATGGAATGAATGACA  50

seq1  GTCCTGTGAAAGAAGGGGGAGGGCTGGGGAAAAAGAACAGTGGCTAAAAC  100
      |||||| |||||  |||| | || ||  |||| || ||||||||| ||||
seq2  GTCCTGGGAAAGCGGGGGAAAGGTTGATGAAATAGCACAGTGGCTGAAAC  100

seq1  AGGAGAACCAGAGTTCAATCACAGAGGTCACACAAGGTCAGGAGGGTGGG  150
      ||||| |||||||| || || |||| |||||| | ||||| ||||| |||
seq2  AGGAGGACCAGAGTGCACTCCCAGAAGTCACAAAGGGTCATGAGGGGGGG  150

seq1  ACATCATTCTTGGAATTACACTTGGAATTCCAGCCTCAGAAAGCAGAGGC  200
      |||| ||||||| ||||||| |||||||||||||||||||||| | ||||
seq2  ACATTATTCTTGAAATTACAGTTGGAATTCCAGCCTCAGAAAGAAAAGGC  200

seq1  AAGTGGTGTGGTCCCTAGAATAAGCTGGCTAAAAAGATTAGGTCATATCA  250
      |||||||||||||||||| |||||||||||||||||  ||||||||||||
seq2  AAGTGGTGTGGTCCCTAGGATAAGCTGGCTAAAAAGTCTAGGTCATATCA  250

seq1  GTGAGCCAGACCGTGATTTTTTTT-ATTGTATATTTTCTTTATTTTCATT  299
      ||||| |||||||| ||||||||| |||||||| ||||||||||||||||
seq2  GTGAGTCAGACCGTTATTTTTTTTAATTGTATACTTTCTTTATTTTCATT  300

seq1  TCAAATGTTACCCACTTTCCCAGTTTCCCCCTATCCCATCCTCCCTCCCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATGTTACCCACTTTCCCAGTTTCCCCCTATCCCATCCTCCCTCCCC  350

seq1  CTGATTCTATGAGGGTGTTCCTCCACCCAACCACCACCAACAACCACTCC  399
      |||||||||||||||||||||||||| ||||||||  |  ||||| ||| 
seq2  CTGATTCTATGAGGGTGTTCCTCCACTCAACCACCCACTCCAACCTCTCT  400

seq1  ACCTTATATTTCCCTATATTGCGGCATCTATCCAGCCTTCATAGGACCAA  449
       ||||| |||| |||||| |||||||||||||||||||||||||||||||
seq2  GCCTTAGATTTACCTATACTGCGGCATCTATCCAGCCTTCATAGGACCAA  450

seq1  GGACCTCTCC-TCCATTGATTCCTGACAAGGCCATCCTCTGCTACATATG  498
      |||||||||| ||||||||| |||||||||||||| ||||||||||||||
seq2  GGACCTCTCCTTCCATTGATGCCTGACAAGGCCATTCTCTGCTACATATG  500

seq1  CAGCTGGAGCCAAGTGTACTCCTCAAGACTCCCGAGAATCAAATAACCCT  548
      |||||||| ||||||||||||| ||||| |||||| ||||||||||||||
seq2  CAGCTGGATCCAAGTGTACTCCGCAAGAATCCCGAAAATCAAATAACCCT  550

seq1  ATTAACAGAGCTAAACAACGAATTCTCAACTGAAGGATATTGAATGGCCT  598
      |||||||||||||||||| |||  ||||||||| | ||||||||||||||
seq2  ATTAACAGAGCTAAACAAAGAAGCCTCAACTGAGGAATATTGAATGGCCT  600

seq1  AGAAGTACCTAAAGAAAAGTTCAGCATCCTTAGTCATCAGGGTAATGCAA  648
      ||||| | |||||||||||||||||||||||||||||||||| |||||||
seq2  AGAAGCA-CTAAAGAAAAGTTCAGCATCCTTAGTCATCAGGGAAATGCAA  649

seq1  ATCAAACTGAAAGACCCGAAAGGAGCTCCTCACTCAGGCCTCAGGACAAT  698
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ATCAAACTGAAAGACCCGAGAGGAGCTCCTCACTCAGGCCTCAGGACAAT  699

seq1  AGTGGACCTCCAAGAACTCAGGAGAGACCAAGCTTGATGTAAACAACATG  748
        |||||| ||||||||||| |||||||||||||||||||||||||||||
seq2  TCTGGACCCCCAAGAACTCATGAGAGACCAAGCTTGATGTAAACAACATG  749

seq1  AGGC  752
      ||||
seq2  AGGC  753