BAC Information

Click to search

BAC

Clone NameB6Ng01-320D07
Chromosome13 (Build37)3 (Build37)
Map Location 64,217,206 - 64,217,390127,133,123 - 127,134,249
singlet/doubletsingletsinglet
Overlap geneSlc35d2
Upstream gene2010111I01Rik, Fancc, Ptch1, C030010C08Rik, 0610007P08Rik, 9330134C04Rik, EG665575, Hsd17b3
Downstream geneZfp367, Habp4, Cdc14b, 1110018J18Rik, Ctsl, Ccrk, LOC665612, 1190003K10Rik, LOC218298, Ppia-ps13_866.1, LOC238678, LOC631470, Cntnap3, EG432767, 4930458L03Rik, LOC218301, LOC628515, 4932441B19Rik, Gm274, Hiatl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-320D07.bB6Ng01-320D07.g
ACCGA109636GA109637
length9081,142
definitionB6Ng01-320D07.b B6Ng01-320D07.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(64,217,206 - 64,217,390)(127,133,123 - 127,134,249)
sequence
gaattctcttcagggtataggcacagataaggaacttctgaataggaccc
tggttgcaaaggaatgagcatcaacagtcaacaggccaggcttcacgaaa
ttaaaagctcctgtatagcaaaggaaactgttaattgacttaagtggcag
cctacacaatggaaaaagtctttgccagctatacatctgacagagaataa
gtgtcttgaatatataaagaactaaaagacctaaacaacaagaaaatgag
caacacaattttaaaatgggctatggaaccgagcagagttctcagaagag
gaaacacgaaagactgctaagcagttttaaaagtgttcaccatccttagc
caacaaggaaatacagaatctacattgagatttcaccttactcaaggcaa
aaatggctaagattaagaaaataaatgacagcagatactgctgaggctct
agggaatgtgaactgccattccctgatgtgcaaactggtacaactgtcat
ggaaatcagttccttcaaaagctagaagtaaatctaccatgtgacctcgc
tatagtgctcctgggagtatatatatatatatatatatatatatatattt
cctactacagacatgtgtattcatcctcgttcactgccactctatacaca
atagccaggttagcctagacctctaccaactgataagtgcataagaaaaa
tctagcacatatacaatggacagctctcagctttttgcttgtttgttttt
gtttttgtttttgtttttgtttttcgagacagggtatctctgtgtagccc
tggctgtcctggaactcactttgtagaccaggctggcctcaaactcagaa
atcctcctgcctctgcctcccaagtgctgggattaaagggaagagtctgt
gtgtgtgt
gaattcatattttggggaaaaacaagtcagaagttcaaagactaaaacat
gttagaaatgtctttattagaggtaaatacattagagattcattgatcat
tcataattttaaaaagctcaggataaaagaaatgcaataatttctcgcac
tgagcaactatcagtctctatcccctgccctgatacactttatttgtgca
gcttaaagtaactagttcctgaacactcctcccctctgttgtgttgaaag
atacgtgtaacaatgagaacacagactagtttgcatcactagtcaacttc
actcacactagaatcacttgtggggagaaaaaaaaaagaatcgttgtcct
tatcttgttgagtctgtgggcgtgtctgttgggcactgccttgattatta
attggtgcagaagggcccagcccactgtgggtggcaccagcccccaggcc
ggtggtcctgagctgtgtaagaaagcaacctgagtgcactcagagactgg
agttctctatggttcctgcctggagttcctgccctgaattccctcagtga
tgaagtgtagcctctaaaatgaataaactctttcctgctcttagttgatt
tggttagctatattttgttacagcaacgaaaagaaaccagaaaaagggca
aatgtgaattctttctgagacaggctattcaacatgaaaatgctttggag
tggttctgctcaagtaatagtttattcacacagatttcttttcttttctt
ttctttctttctttctttctttctttctttctttctttctttcttttttt
tttttcaagacagggggacagggctttctctgtgtagccctggctgtcct
gaaattctgtagatcaggctgggccttgaactcagaaatccgcctgccct
ctgcctcccaagtgctgggatttaaagggcgtgcaccaccactgcctggc
cttggttgttctggaaggagcttggtccattttttttatttttggaagaa
atctccaccggattgatgatttaataggaggaggagcatagagtatcttt
tgtctctgttctggcctgtctagacaatagagttcaaaggtatccctaca
acaagactcttgaagaaggccattcgcctaagttggcttgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_64217206_64217390
seq2: B6Ng01-320D07.b_785_951 (reverse)

seq1  ACACACACACAGCCGGGCGTGGTGGCGCACGCCTTTAATCCCAGCACTCG  50
      |||||||||||            | | |   ||||||||||||||||| |
seq2  ACACACACACA------------GACTCTTCCCTTTAATCCCAGCACTTG  38

seq1  GGAGGCAGAGGCAGGAGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAA  100
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GGAGGCAGAGGCAGGAGGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAA  88

seq1  AGTGAGCTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCGAAAA  150
      |||||| ||||||||||||||||||| ||||||| ||||||||||| |||
seq2  AGTGAGTTCCAGGACAGCCAGGGCTACACAGAGATACCCTGTCTCG-AAA  137

seq1  AACAAAAAAACAAAAAACAAACAAACAAAAACAAA  185
      ||||||||    ||||||||  |||||||||||||
seq2  AACAAAAA---CAAAAACAA--AAACAAAAACAAA  167

seq1: chr3_127133123_127134249
seq2: B6Ng01-320D07.g_67_1208 (reverse)

seq1  TCCAAGCAAACTTA-GCG-ATG--CTTCTTTCAGGAGTCTTTGTTGTA-G  45
      ||||||| |||||| ||| |||  |||| |||| ||||| |||||||| |
seq2  TCCAAGCCAACTTAGGCGAATGGCCTTC-TTCAAGAGTC-TTGTTGTAGG  48

seq1  GATACTTTTG-ACTCTATTGTCTAGGAACAGG-CAGAACAAGAGACAAAA  93
      ||||| |||| ||||||||||||||  ||||| |||||| ||||||||||
seq2  GATACCTTTGAACTCTATTGTCTAG--ACAGGCCAGAAC-AGAGACAAAA  95

seq1  GATAACTCTATGCT-CTCCTCCTA-TAAATCATCCAATCGGT-GAGATTT  140
      ||| |||||||||| ||||||||| ||||||||| |  |||| |||||||
seq2  GAT-ACTCTATGCTCCTCCTCCTATTAAATCATCAATCCGGTGGAGATTT  144

seq1  CTTCCAAAAAT-AAAAAAATGGACCCAGCT-CTTCCAGA--CACCAA-GC  185
      ||||||||||| ||||||||||||| |||| ||||||||   ||||| ||
seq2  CTTCCAAAAATAAAAAAAATGGACCAAGCTCCTTCCAGAACAACCAAGGC  194

seq1  CAGGCAGTGGTGGTGCACGCC--TTTAATCCCAGCACTTGGGAGGCAGA-  232
      |||||||||||||||||||||  || ||||||||||||||||||||||| 
seq2  CAGGCAGTGGTGGTGCACGCCCTTTAAATCCCAGCACTTGGGAGGCAGAG  244

seq1  GGCAGGCGGATTTCTGAGTTCAAGG-CCAGCCTGATCTACAGAATTTCAG  281
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GGCAGGCGGATTTCTGAGTTCAAGGCCCAGCCTGATCTACAGAATTTCAG  294

seq1  GACAGCCAGGGCTACACAGAG-AAGCCCTGT-CCCCTGTCTTGAAAAAAA  329
      ||||||||||||||||||||| ||||||||| ||||||||||||||||||
seq2  GACAGCCAGGGCTACACAGAGAAAGCCCTGTCCCCCTGTCTTGAAAAAAA  344

seq1  AAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAA  379
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAA  394

seq1  GAAAAGAAAAGAAATCTGTGTGAATAAACTATTACTTGAGCAGAACCACT  429
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGAAAAGAAATCTGTGTGAATAAACTATTACTTGAGCAGAACCACT  444

seq1  CCAAAGCATTTTCATGTTGAATAGCCTGTCTCAGAAAGAATTCACATTTG  479
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGCATTTTCATGTTGAATAGCCTGTCTCAGAAAGAATTCACATTTG  494

seq1  CCCTTTTTCTGGTTTCTTTTCGTTGCTGTAACAAAATATAGCTAACCAAA  529
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTTTCTGGTTTCTTTTCGTTGCTGTAACAAAATATAGCTAACCAAA  544

seq1  TCAACTAAGAGCAGGAAAGAGTTTATTCATTTTAGAGGCTACACTTCATC  579
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTAAGAGCAGGAAAGAGTTTATTCATTTTAGAGGCTACACTTCATC  594

seq1  ACTGAGGGAATTCAGGGCAGGAACTCCAGGCAGGAACCATAGAGAACTCC  629
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGGGAATTCAGGGCAGGAACTCCAGGCAGGAACCATAGAGAACTCC  644

seq1  AGTCTCTGAGTGCACTCAGGTTGCTTTCTTACACAGCTCAGGACCACCGG  679
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCTGAGTGCACTCAGGTTGCTTTCTTACACAGCTCAGGACCACCGG  694

seq1  CCTGGGGGCTGGTGCCACCCACAGTGGGCTGGGCCCTTCTGCACCAATTA  729
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGGGCTGGTGCCACCCACAGTGGGCTGGGCCCTTCTGCACCAATTA  744

seq1  ATAATCAAGGCAGTGCCCAACAGACACGCCCACAGACTCAACAAGATAAG  779
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCAAGGCAGTGCCCAACAGACACGCCCACAGACTCAACAAGATAAG  794

seq1  GACAACGATTCTTTTTTTTTTCTCCCCACAAGTGATTCTAGTGTGAGTGA  829
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACGATTCTTTTTTTTTTCTCCCCACAAGTGATTCTAGTGTGAGTGA  844

seq1  AGTTGACTAGTGATGCAAACTAGTCTGTGTTCTCATTGTTACACGTATCT  879
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGACTAGTGATGCAAACTAGTCTGTGTTCTCATTGTTACACGTATCT  894

seq1  TTCAACACAACAGAGGGGAGGAGTGTTCAGGAACTAGTTACTTTAAGCTG  929
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACACAACAGAGGGGAGGAGTGTTCAGGAACTAGTTACTTTAAGCTG  944

seq1  CACAAATAAAGTGTATCAGGGCAGGGGATAGAGACTGATAGTTGCTCAGT  979
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAATAAAGTGTATCAGGGCAGGGGATAGAGACTGATAGTTGCTCAGT  994

seq1  GCGAGAAATTATTGCATTTCTTTTATCCTGAGCTTTTTAAAATTATGAAT  1029
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGAAATTATTGCATTTCTTTTATCCTGAGCTTTTTAAAATTATGAAT  1044

seq1  GATCAATGAATCTCTAATGTATTTACCTCTAATAAAGACATTTCTAACAT  1079
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAATGAATCTCTAATGTATTTACCTCTAATAAAGACATTTCTAACAT  1094

seq1  GTTTTAGTCTTTGAACTTCTGACTTGTTTTTCCCCAAAATATGAATTC  1127
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAGTCTTTGAACTTCTGACTTGTTTTTCCCCAAAATATGAATTC  1142