BAC Information

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BAC

Clone NameB6Ng01-320E17
Chromosome13 (Build37)
Map Location 77,243,498 - 77,346,684
singlet/doubletdoublet
Overlap gene2210408I21Rik, LOC631139
Upstream geneAK129128, Gm276, Mctp1, LOC666603, EG666607, Ankrd32
Downstream geneLOC675063, D13Mgi7, 1110033M05Rik, 1700013G10Rik, Nr2f1, EG666856
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-320E17.bB6Ng01-320E17.g
ACCGA109701GA109702
length1,1501,139
definitionB6Ng01-320E17.b B6Ng01-320E17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,243,498 - 77,244,670)(77,345,524 - 77,346,684)
sequence
gaattcatctaattggaaaaactaaaatgaaatacaaggaaaataacaca
aattctaaagtaagggatacttcagatatagttaggaaaggacacagaca
tagcttaacagttactgagactgattctttcccaggcaaaatgagttcat
aaatagacattttttttcctttgaaaacaaactatataaatgtgttatac
cactttgatacatgtgctttgcaagctcatactgtatttagtaaatttag
aaaggatctacaaaataaaatgaatattttaatttgtgaaattttacctg
attctcaagtccatgtcttctgagtgtatttctctttttaacagatctta
tatcttttctgaagtctttgaatttttttttgtgatgttcactcagaaca
aatctatcactaacatttttattatgattttccattttattctgcatgta
tataaaaataattatactctcggttatatataatatagcttcaccacaac
taatagaagtcataataaaaaaatttcaggaaagtaggtttataaaacac
acatgacattaaacttaaaatataaagtgagttttaatacatcgttctta
tacaaaacagaccagaaaacaaatgctttagtttgccacattttataagt
agtaacttaccagatgtacttactaatttaattctgaggatagagtatta
caaactatttttagatatgaaaaatttgttagttgcatgtatattctcgt
atatttattttaatgatttctttatcttttagaaaaacatatatttttct
gtttaataaaaaaacagaatcaactgtggtaacttccgtagtttacactc
ttttgatacatgtaaacactgttcatatgaagttatattgcacaaatcag
acaaatcaatttaaaaattctcttatgaacttgcaaacatggtcacagaa
ggaagtctaaatgggcacacaaatatcactgtattcaggagacagagcaa
actgataagtatttaattctataaagtttagccaatcatgtcatgtcata
gaactgcagataaaaacttcaaattctacatgaatacagtgagttcattt
aaacataaaattctttcaggctagactagtactactgagtttgactgata


gaattcagtcctccaagagtcaaaggactactgccttactgcatcacaaa
aagaacattatcaatggcagttgtaattgacttcagtgcagataaaagga
taaaaggcagcagcattaagacatcttcacaatacagcttcctatgagag
caatcatgtttggaggtaatttctgttttatttcaggagtgattacttca
caaacctgggtgccaatccaataatcacactgtataagtttaaagttttt
ctaccttgtgggaccaaaaaaaaaaaatggcatttattctcagcatgacc
atgttccagaaatttaaaacaagccatcaaattacgctgtcttgtatatt
ccctgacatcccagaattccaccgaccataacagcctcacccttggcttg
gacttcctgctgtcctcagctcttctacattgttaacaaagagtggagtg
aactttacacttctatttttatttcatggtgagaagaagatgttgtttag
ctttggatggaggcaacatacactactctgcaatttaaaataacttctca
tgtctttacatgtgtgacttaaaatctccaattcaagtaatataaccatc
aaaatccttttgaatgttctggtaaaaacagtagtaagttaaagtatatg
tctaaatacaggacgtataactctattttaagaatttctgactggaaatc
cttgaagacgttggaacatttagcccaaagctctgcattactcctcaatt
ccaaaagtgatgaaaagactggctccttaactcagtataaccagttgttg
tgtagcttttataaccttctttgtggagagcagtccacttagaaagtgcc
atttcagacaagctacttcaacagctcggagggggtgggggggagacaca
gattttcctctactatagcctgaatgcctgtatcacaaccccaaactcat
agtctgatttttttcactactgtgatgtaatgctgtatctgcaattctaa
ctcatactctaaagtcaagactagtgagagtatgggaaggtgcaaacttt
ggaagtgaatgcagaacatgcctaaataccagattgctgtcctctaggaa
ccaaagtctaacgcttactctggtaaagaaccaaagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_77243498_77244670
seq2: B6Ng01-320E17.b_42_1191

seq1  GAATTCATCTAATTGGAAAAACTAAAATGAAATACAAGGAAAATAACACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTAATTGGAAAAACTAAAATGAAATACAAGGAAAATAACACA  50

seq1  AATTCTAAAGTAAGGGATACTTCAGATATAGTTAGGAAAGGACACAGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTAAAGTAAGGGATACTTCAGATATAGTTAGGAAAGGACACAGACA  100

seq1  TAGCTTAACAGTTACTGAGACTGATTCTTTCCCAGGCAAAATGAGTTCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTAACAGTTACTGAGACTGATTCTTTCCCAGGCAAAATGAGTTCAT  150

seq1  AAATAGACATTTTTTTTCCTTTGAAAACAAACTATATAAATGTGTTATAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGACATTTTTTTTCCTTTGAAAACAAACTATATAAATGTGTTATAC  200

seq1  CACTTTGATACATGTGCTTTGCAAGCTCATACTGTATTTAGTAAATTTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTGATACATGTGCTTTGCAAGCTCATACTGTATTTAGTAAATTTAG  250

seq1  AAAGGATCTACAAAATAAAATGAATATTTTAATTTGTGAAATTTTACCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGATCTACAAAATAAAATGAATATTTTAATTTGTGAAATTTTACCTG  300

seq1  ATTCTCAAGTCCATGTCTTCTGAGTGTATTTCTCTTTTTAACAGATCTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCAAGTCCATGTCTTCTGAGTGTATTTCTCTTTTTAACAGATCTTA  350

seq1  TATCTTTTCTGAAGTCTTTGAATTTTTTTTTGTGATGTTCACTCAGAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTTCTGAAGTCTTTGAATTTTTTTTTGTGATGTTCACTCAGAACA  400

seq1  AATCTATCACTAACATTTTTATTATGATTTTCCATTTTATTCTGCATGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTATCACTAACATTTTTATTATGATTTTCCATTTTATTCTGCATGTA  450

seq1  TATAAAAATAATTATACTCTCGGTTATATATAATATAGCTTCACCACAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAAATAATTATACTCTCGGTTATATATAATATAGCTTCACCACAAC  500

seq1  TAATAGAAGTCATAATAAAAAAATTTCAGGAAAGTAGGTTTATAAAACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGAAGTCATAATAAAAAAATTTCAGGAAAGTAGGTTTATAAAACAC  550

seq1  ACATGACATTAAACTTAAAATATAAAGTGAGTTTTAATACATCGTTCTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGACATTAAACTTAAAATATAAAGTGAGTTTTAATACATCGTTCTTA  600

seq1  TACAAAACAGACCAGAAAACAAATGCTTTAGTTTGCCACATTTTATAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAACAGACCAGAAAACAAATGCTTTAGTTTGCCACATTTTATAAGT  650

seq1  AGTAACTTACCAGATGTACTTACTAATTTAATTCTGAGGATAGAGTATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACTTACCAGATGTACTTACTAATTTAATTCTGAGGATAGAGTATTA  700

seq1  CAAACTATTTTTAGATATGAAAAATTTGTTAGTTGCATGTATATTCTCGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTATTTTTAGATATGAAAAATTTGTTAGTTGCATGTATATTCTCGT  750

seq1  ATATTTATTTTAATGATTTCTTTATCTTTTAGAAAAACATATATTTTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTATTTTAATGATTTCTTTATCTTTTAGAAAAACATATATTTTTCT  800

seq1  GTTTAATAAAAAAACAGAATCAACTGTGGTAACTTCCGTAGTTTACACTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAATAAAAAAACAGAATCAACTGTGGTAACTTCCGTAGTTTACACTC  850

seq1  TTTTGATACATGTAAACACTGTTCATATGAAGTTATATTGCACAAATCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGATACATGTAAACACTGTTCATATGAAGTTATATTGCACAAATCAG  900

seq1  ACAAATCAATTTAAAAATTCTCTTATGAAACTTGCAAACATGGTCACAGA  950
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ACAAATCAATTTAAAAATTCTCTTATG-AACTTGCAAACATGGTCACAGA  949

seq1  AGGAAGTCTAAATGGGCACACAAATATCACTGTATTCAGGAAGACAAGGA  1000
      |||||||||||||||||||||||||||||||||||||||| |||||  ||
seq2  AGGAAGTCTAAATGGGCACACAAATATCACTGTATTCAGG-AGACA--GA  996

seq1  GCAAAACTGATAAAGTATTTTAATTCTATAAAGTTTTAGCCAATCATGTC  1050
      || |||||||| ||||| ||||||||||||||| ||||||||||||||||
seq2  GC-AAACTGAT-AAGTA-TTTAATTCTATAAAG-TTTAGCCAATCATGTC  1042

seq1  ATGTCATAAGAAACTGCAGAATTAAAAAACTTTCAAATTTCCTACCATGA  1100
      ||||||||   |||||||||  ||||||   ||||||||  ||| |||||
seq2  ATGTCATA--GAACTGCAGA--TAAAAA--CTTCAAATT--CTA-CATGA  1083

seq1  ATACAGTGAGTTTCAATTTAAACATAAAAATCTTTCAGTTTAGACTTAGT  1150
      ||||||||||||   |||||||||||||| ||||||||  ||||| ||||
seq2  ATACAGTGAGTT--CATTTAAACATAAAATTCTTTCAGGCTAGAC-TAGT  1130

seq1  AACTACTGAGTTTTGACTTGATA  1173
       ||||||||| |||||| |||||
seq2  -ACTACTGAG-TTTGAC-TGATA  1150


seq1: chr13_77345524_77346684
seq2: B6Ng01-320E17.g_66_1204 (reverse)

seq1  TCTCTTTTGGTTCTTTTTCAAGGAGTAAAGGGTGAGGAACTCTCTGAGTC  50
      |||| |||||||||||  ||  |||| ||| || ||  ||| |    |  
seq2  TCTC-TTTGGTTCTTTACCA--GAGT-AAGCGTTAG--ACTTT----GGT  40

seq1  TCCTTTAGAAGGACAGCAATCTTGTATCTAGGGCATGGTCCTGCAATCAC  100
      |||  ||| ||||||||||||| |||| || ||||| || ||||| ||||
seq2  TCC--TAG-AGGACAGCAATCTGGTATTTA-GGCAT-GTTCTGCATTCAC  85

seq1  CTTCAAAGTTTCCACCTCCCAATACTCTCACCTTAGTCTTGGACTTTAGA  150
       | |||||||| ||||| || ||||||||||  ||||||| |||||||||
seq2  TTCCAAAGTTTGCACCTTCCCATACTCTCAC--TAGTCTT-GACTTTAGA  132

seq1  GTATGAGTTTAGAATTGCAGATACAAGCATTTACATCACAGTAGTGAAAA  200
      ||||||| |||||||||||||||| |||| ||||||||||||||||||||
seq2  GTATGAG-TTAGAATTGCAGATAC-AGCA-TTACATCACAGTAGTGAAAA  179

seq1  AAATCAGACTATGAGTTTGGGGTTGTGAATACAGGCATTCAGGCTATAGT  250
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AAATCAGACTATGAGTTTGGGGTTGTG-ATACAGGCATTCAGGCTATAGT  228

seq1  AGAGGAAAATCTGTGTCTCCCCCCACCCCCCTCCGAGCTGTTGAAGTAGC  300
      ||||||||||||||||||||||||  ||||||||||||||||||||||||
seq2  AGAGGAAAATCTGTGTCTCCCCCCCACCCCCTCCGAGCTGTTGAAGTAGC  278

seq1  TTGTCTGAAATGGCACTTTCTAAGTGGACTGCTCTCCACAAAGAAGGTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTGAAATGGCACTTTCTAAGTGGACTGCTCTCCACAAAGAAGGTTA  328

seq1  TAAAAGCTACACAACAACTGGTTATACTGAGTTAAGGAGCCAGTCTTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGCTACACAACAACTGGTTATACTGAGTTAAGGAGCCAGTCTTTTC  378

seq1  ATCACTTTTGGAATTGAGGAGTAATGCAGAGCTTTGGGCTAAATGTTCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTTTTGGAATTGAGGAGTAATGCAGAGCTTTGGGCTAAATGTTCCA  428

seq1  ACGTCTTCAAGGATTTCCAGTCAGAAATTCTTAAAATAGAGTTATACGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCTTCAAGGATTTCCAGTCAGAAATTCTTAAAATAGAGTTATACGTC  478

seq1  CTGTATTTAGACATATACTTTAACTTACTACTGTTTTTACCAGAACATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATTTAGACATATACTTTAACTTACTACTGTTTTTACCAGAACATTC  528

seq1  AAAAGGATTTTGATGGTTATATTACTTGAATTGGAGATTTTAAGTCACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGATTTTGATGGTTATATTACTTGAATTGGAGATTTTAAGTCACAC  578

seq1  ATGTAAAGACATGAGAAGTTATTTTAAATTGCAGAGTAGTGTATGTTGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAAGACATGAGAAGTTATTTTAAATTGCAGAGTAGTGTATGTTGCC  628

seq1  TCCATCCAAAGCTAAACAACATCTTCTTCTCACCATGAAATAAAAATAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCCAAAGCTAAACAACATCTTCTTCTCACCATGAAATAAAAATAGA  678

seq1  AGTGTAAAGTTCACTCCACTCTTTGTTAACAATGTAGAAGAGCTGAGGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTAAAGTTCACTCCACTCTTTGTTAACAATGTAGAAGAGCTGAGGAC  728

seq1  AGCAGGAAGTCCAAGCCAAGGGTGAGGCTGTTATGGTCGGTGGAATTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGAAGTCCAAGCCAAGGGTGAGGCTGTTATGGTCGGTGGAATTCTG  778

seq1  GGATGTCAGGGAATATACAAGACAGCGTAATTTGATGGCTTGTTTTAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTCAGGGAATATACAAGACAGCGTAATTTGATGGCTTGTTTTAAAT  828

seq1  TTCTGGAACATGGTCATGCTGAGAATAAATGCCATTTTTTTTTTTTGGTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGAACATGGTCATGCTGAGAATAAATGCCATTTTTTTTTTTTGGTC  878

seq1  CCACAAGGTAGAAAAACTTTAAACTTATACAGTGTGATTATTGGATTGGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAGGTAGAAAAACTTTAAACTTATACAGTGTGATTATTGGATTGGC  928

seq1  ACCCAGGTTTGTGAAGTAATCACTCCTGAAATAAAACAGAAATTACCTCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGGTTTGTGAAGTAATCACTCCTGAAATAAAACAGAAATTACCTCC  978

seq1  AAACATGATTGCTCTCATAGGAAGCTGTATTGTGAAGATGTCTTAATGCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATGATTGCTCTCATAGGAAGCTGTATTGTGAAGATGTCTTAATGCT  1028

seq1  GCTGCCTTTTATCCTTTTATCTGCACTGAAGTCAATTACAACTGCCATTG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCTTTTATCCTTTTATCTGCACTGAAGTCAATTACAACTGCCATTG  1078

seq1  ATAATGTTCTTTTTGTGATGCAGTAAGGCAGTAGTCCTTTGACTCTTGGA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGTTCTTTTTGTGATGCAGTAAGGCAGTAGTCCTTTGACTCTTGGA  1128

seq1  GGACTGAATTC  1161
      |||||||||||
seq2  GGACTGAATTC  1139


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