BAC Information

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BAC

Clone NameB6Ng01-320M06
Chromosome13 (Build37)
Map Location 38,315,179 - 38,447,481
singlet/doubletdoublet
Overlap gene6530403A03Rik, Bmp6
Upstream geneLy86, LOC100042794, LOC100042800, LOC100042802, LOC100041624, Rreb1, Ssr1, Cage1, Riok1, Dsp
Downstream geneTxndc5, Muted, Eef1e1, LOC621102, Slc35b3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-320M06.bB6Ng01-320M06.g
ACCGA110051GA110052
length264842
definitionB6Ng01-320M06.b B6Ng01-320M06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,447,219 - 38,447,481)(38,315,179 - 38,316,016)
sequence
aataccattctttagggttcccatgttccttagtcacagtacactggata
gcccttccttggagaaaaacaaaaacaaaaaaccctactcaatgtattat
tcccaaagccctcaggatttatggagtctcaattagatttactacagtct
aagtagtttctcctaaggtaggctgagatcgcccctcaatgtccagtatg
gtttggtttggtttggttttgttctgttttgttttgtttttttttttttt
tttggggggggggg
gaattcttttaaagtcagcagcatcaaaattctcattcttttgaaaggct
ctgagcactcagggtcagtttctatttatttcttgtactttccatgacct
atggagagaatagtcggcactcggtagcctattttgcattgtgtcctgct
gcctagtttttattttttatttatgttttaatgattactttaaggtgtct
tagtcagggtttctgttcctacacaaacatcatgaccaagaagcaagttg
gggaggaaagggtttattcagcttacatttccatactgctgttgatcacc
aaaggatgctggactggaactcaagcaggtcagaaagcaggagctgatgc
agaggccatggagggatgttccttactggcttgcctcccctggcttgctc
agcctgctctcttatagaaccaagattaccagcccagagatggtcccacc
cacaaggggaccttcccccttgatcactaattgagaaaatgccttacagt
tgtatctcatggaggcatttcctcaactgaagctcctttctctgtgataa
ctccagctgtgtcaagttgacacaaaactagccagtacacttggtaaagt
cttttcttatttgagcaaaaagaatcgccttatctagcacaccactgttg
gctgcactcagtagttccttccccactggagagttttagcttctgcaagg
cagggccctacttagatgtttgtttgtttgttttttatttttgaggcatg
gtctcactgtgtatttctaactgtcctggatgtcactctgtagaccaggg
ctgacctcaagctcatcaagagaacccgccctgtgtctgcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_38447219_38447481
seq2: B6Ng01-320M06.b_51_313 (reverse)

seq1  CCCCCCCCCCAAAAAAAAAAAAAAAAACAAAACAAAACAGAACAAAACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCCAAAAAAAAAAAAAAAAACAAAACAAAACAGAACAAAACCA  50

seq1  AACCAAACCAAACCATACTGGACATTGAGGGGCGATCTCAGCCTACCTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAACCAAACCATACTGGACATTGAGGGGCGATCTCAGCCTACCTTA  100

seq1  GGAGAAACTACTTAGACTGTAGTAAATCTAATTGAGACTCCATAAATCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAACTACTTAGACTGTAGTAAATCTAATTGAGACTCCATAAATCCT  150

seq1  GAGGGCTTTGGGAATAATACATTGAGTAGGGTTTTTTGTTTTTGTTTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCTTTGGGAATAATACATTGAGTAGGGTTTTTTGTTTTTGTTTTTC  200

seq1  TCCAAGGAAGGGCTATCCAGTGTACTGTGACTAAGGAACATGGGAACCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGGAAGGGCTATCCAGTGTACTGTGACTAAGGAACATGGGAACCCT  250

seq1  AAAGAATGGTATT  263
      |||||||||||||
seq2  AAAGAATGGTATT  263

seq1: chr13_38315179_38316016
seq2: B6Ng01-320M06.g_66_907

seq1  GAATTCTTTTAAAGTCAGCAGCATCAAAATTCTCATTCTTTTGAAAGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTAAAGTCAGCAGCATCAAAATTCTCATTCTTTTGAAAGGCT  50

seq1  CTGAGCACTCAGGGTCAGTTTCTATTTATTTCTTGTACTTTCCATGACCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCACTCAGGGTCAGTTTCTATTTATTTCTTGTACTTTCCATGACCT  100

seq1  ATGGAGAGAATAGTCGGCACTCGGTAGCCTATTTTGCATTGTGTCCTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGAGAATAGTCGGCACTCGGTAGCCTATTTTGCATTGTGTCCTGCT  150

seq1  GCCTAGTTTTTATTTTTTATTTATGTTTTAATGATTACTTTAAGGTGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGTTTTTATTTTTTATTTATGTTTTAATGATTACTTTAAGGTGTCT  200

seq1  TAGTCAGGGTTTCTGTTCCTACACAAACATCATGACCAAGAAGCAAGTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCAGGGTTTCTGTTCCTACACAAACATCATGACCAAGAAGCAAGTTG  250

seq1  GGGAGGAAAGGGTTTATTCAGCTTACATTTCCATACTGCTGTTGATCACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGAAAGGGTTTATTCAGCTTACATTTCCATACTGCTGTTGATCACC  300

seq1  AAAGGATGCTGGACTGGAACTCAAGCAGGTCAGAAAGCAGGAGCTGATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGATGCTGGACTGGAACTCAAGCAGGTCAGAAAGCAGGAGCTGATGC  350

seq1  AGAGGCCATGGAGGGATGTTCCTTACTGGCTTGCCTCCCCTGGCTTGCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCCATGGAGGGATGTTCCTTACTGGCTTGCCTCCCCTGGCTTGCTC  400

seq1  AGCCTGCTCTCTTATAGAACCAAGATTACCAGCCCAGAGATGGTCCCACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGCTCTCTTATAGAACCAAGATTACCAGCCCAGAGATGGTCCCACC  450

seq1  CACAAGGGGACCTTCCCCCTTGATCACTAATTGAGAAAATGCCTTACAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGGGGACCTTCCCCCTTGATCACTAATTGAGAAAATGCCTTACAGT  500

seq1  TGTATCTCATGGAGGCATTTCCTCAACTGAAGCTCCTTTCTCTGTGATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCTCATGGAGGCATTTCCTCAACTGAAGCTCCTTTCTCTGTGATAA  550

seq1  CTCCAGCTGTGTCAAGTTGACACAAAACTAGCCAGTACACTTGGTAAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGCTGTGTCAAGTTGACACAAAACTAGCCAGTACACTTGGTAAAGT  600

seq1  CTTTTCTTATTTGAGCAAAAAGAATCGCCTTATCTAGCACACCACTGTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTTATTTGAGCAAAAAGAATCGCCTTATCTAGCACACCACTGTTG  650

seq1  GCTGCACTCAGTAGTTCCTTCCCCACTGGAGAGTTTTAGCTTCTGCAAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCACTCAGTAGTTCCTTCCCCACTGGAGAGTTTTAGCTTCTGCAAGG  700

seq1  CAGGGCCCTACTTAGATGTTTGTTTGTTTGTTTTTTATTTTTGAGGCATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCCCTACTTAGATGTTTGTTTGTTTGTTTTTTATTTTTGAGGCATG  750

seq1  GTCTCACTGTGTATTTCTAACTGTCCTGGATGTCACTCTGTAGACCA-GG  799
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GTCTCACTGTGTATTTCTAACTGTCCTGGATGTCACTCTGTAGACCAGGG  800

seq1  CTGACCTCAAGCTCA-CAAGAG-ACCCG-CCTGCCTCTGCCT  838
      ||||||||||||||| |||||| ||||| ||||  |||||||
seq2  CTGACCTCAAGCTCATCAAGAGAACCCGCCCTGTGTCTGCCT  842