BAC Information

Click to search

BAC

Clone NameB6Ng01-320M11
Chromosome13 (Build37)
Map Location 79,931,449 - 79,948,433
singlet/doubletdoublet
Overlap genenone
Upstream geneEG666883
Downstream geneLOC666925, LOC382780, EG666933
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-320M11.bB6Ng01-320M11.g
ACCGA110061GA110062
length1,195376
definitionB6Ng01-320M11.b B6Ng01-320M11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,947,237 - 79,948,433)(79,931,449 - 79,931,794)
sequence
gaattcttgcaataaaaacaaaaaaaactatattctaggaaattcatgta
aatataaaaatctatgtgagctgcaagctgacttctaatactaggcagaa
tgtctcctctcttcaaggtaaatgtagtaattaaggaattattatctgtg
gacctctaattttcagactattgatggcatcatcaacgtaatagaatcac
ttgagtaaaatctaatgaaaatgttggatactggaatagctgtaatttta
cagatgtggtccttcttgattctattatttaatgagtctttgcaaggagg
taagcagtagctaaaatattctattgaaggagaaatactggcaagattgc
tcacatttgctttcaaagttctttgcaaactatgcttctagagcacacat
tgaaagatacacattgaaggatagctgaatgatttgattcttggtagtaa
attgtataaattaaggaataatttctcatcctatgtttattgaaaccatg
aaatctattaatgtaactaaaagacttatgtcacaaagataataaaatat
catggttgactcatgttttgtgcttctgaacacatctaactatcaaagct
ggggtcatttcatctattctttcatttacccaataaatatttattaattc
catcttaagtgctaaacttctaacttgacccaagaccttcaagaaatgaa
aaggatttctccagtagattgacactagctttttaagaaaatgatattta
atattggattcatttttttttcatttttattaggtatttagctcatttac
atttccaatgctataccaaaagtccccatacccccccccactcccctacc
cacccactccccccttttagccctggcattcccctgtactggggcatata
aagtttgcaagtccaatgggcctctctttgcagtgatggccgactaggcc
atcttttgataacataatgcagctagagacaagagcctccggggttactg
ctaggttcatatggttgtttccaccctataggtgcagttccctttagtcc
ttggggtgcttctctagtcctcatgggggcctggtgtcaattcaatgctg
actgtgagcattcacttctgtgttggctaagacctgccatgtctcaaaga
gaaacgctattgctgtcatttcagcaaatcctgctagatgtatgc

gaattcttgtaaacacagtgggagaatggagacagacaggttcctaaata
tcattctacatcttgcttaggttagtctatgagatccacattcaaagaga
gagtttttcttaaaaaattaagcatagaaagtaattgaggaaagacaaga
tatcaattttaggattccacatgtgtgcatatacatatttaagtgccaat
gtttatatatatatatatatatatatatgtatatatatatatatatatgt
atgtgtatatgtatatatgcatatatatgtatgtgtatatatatgtatac
atatatatatatatatatatatatatatacatatatatatatatatatat
acacacacatgtatatatatatatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_79947237_79948433
seq2: B6Ng01-320M11.b_49_1242 (reverse)

seq1  GCATACA-CTAGCAAGATTTTGCTGAAATGACCCAGATATAGC-TGTCTC  48
      ||||||| |||||| || |||||||||||||  |||  ||||| | ||||
seq2  GCATACATCTAGCAGGA-TTTGCTGAAATGA--CAGCAATAGCGTTTCTC  47

seq1  TTGTGAGACTATGCCAGGGCCTAGCAAACACAGAAGTGAATGCTCACAGT  98
      || |||||| ||| |||| | |||| ||||||||||||||||||||||||
seq2  TT-TGAGAC-ATGGCAGGTCTTAGCCAACACAGAAGTGAATGCTCACAGT  95

seq1  CAGCAATTGAATGGACCACAGGGCCCCCAATGGAGGAACTAGAGAAAGCA  148
      |||| ||||||| || |||  ||||||||   |||| ||||||| |||||
seq2  CAGC-ATTGAATTGA-CACCAGGCCCCCA--TGAGG-ACTAGAG-AAGCA  139

seq1  CCCAAGGAACTAAAGGGAACTGCAACCCTATA-GGTGG-AACAACAATAT  196
      ||| | | ||||||||||||||||  |||||| ||||| |||||| ||||
seq2  CCCCAAGGACTAAAGGGAACTGCA--CCTATAGGGTGGAAACAACCATAT  187

seq1  GAACTAAGCAGT-ACCCCGGA-GCTCTTGTCTCTAGCTGCA-TATG-TAT  242
      ||||  |||||| |||||||| ||||||||||||||||||| |||| |||
seq2  GAACCTAGCAGTAACCCCGGAGGCTCTTGTCTCTAGCTGCATTATGTTAT  237

seq1  CAAAAGATGGCCTAGTCGGCCATCACTGCAAAGAGAGGCCCATTGGACTT  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGATGGCCTAGTCGGCCATCACTGCAAAGAGAGGCCCATTGGACTT  287

seq1  GCAAACTTTATATGCCCCAGTACAGGGGAATGCCAGGGCTAAAAGGGGGG  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACTTTATATGCCCCAGTACAGGGGAATGCCAGGGCTAAAAGGGGGG  337

seq1  AGTGGGTGGGTAGGGGAGT-GGGGGGGGTATGGGGACTTTTGGTATAGCA  391
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AGTGGGTGGGTAGGGGAGTGGGGGGGGGTATGGGGACTTTTGGTATAGCA  387

seq1  TTGGAAATGTAAATGAGCTAAATACCTAATAAAAATG-AAAAAAAATGAA  440
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTGGAAATGTAAATGAGCTAAATACCTAATAAAAATGAAAAAAAAATGAA  437

seq1  TCCAATATTAAATATCATTTTCTTAAAAAGCTAGTGTCAATCTACTGGAG  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATATTAAATATCATTTTCTTAAAAAGCTAGTGTCAATCTACTGGAG  487

seq1  AAATCCTTTTCATTTCTTGAAGGTCTTGGGTCAAGTTAGAAGTTTAGCAC  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCTTTTCATTTCTTGAAGGTCTTGGGTCAAGTTAGAAGTTTAGCAC  537

seq1  TTAAGATGGAATTAATAAATATTTATTGGGTAAATGAAAGAATAGATGAA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGATGGAATTAATAAATATTTATTGGGTAAATGAAAGAATAGATGAA  587

seq1  ATGACCCCAGCTTTGATAGTTAGATGTGTTCAGAAGCACAAAACATGAGT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCCCAGCTTTGATAGTTAGATGTGTTCAGAAGCACAAAACATGAGT  637

seq1  CAACCATGATATTTTATTATCTTTGTGACATAAGTCTTTTAGTTACATTA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCATGATATTTTATTATCTTTGTGACATAAGTCTTTTAGTTACATTA  687

seq1  ATAGATTTCATGGTTTCAATAAACATAGGATGAGAAATTATTCCTTAATT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATTTCATGGTTTCAATAAACATAGGATGAGAAATTATTCCTTAATT  737

seq1  TATACAATTTACTACCAAGAATCAAATCATTCAGCTATCCTTCAATGTGT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAATTTACTACCAAGAATCAAATCATTCAGCTATCCTTCAATGTGT  787

seq1  ATCTTTCAATGTGTGCTCTAGAAGCATAGTTTGCAAAGAACTTTGAAAGC  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTCAATGTGTGCTCTAGAAGCATAGTTTGCAAAGAACTTTGAAAGC  837

seq1  AAATGTGAGCAATCTTGCCAGTATTTCTCCTTCAATAGAATATTTTAGCT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTGAGCAATCTTGCCAGTATTTCTCCTTCAATAGAATATTTTAGCT  887

seq1  ACTGCTTACCTCCTTGCAAAGACTCATTAAATAATAGAATCAAGAAGGAC  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTTACCTCCTTGCAAAGACTCATTAAATAATAGAATCAAGAAGGAC  937

seq1  CACATCTGTAAAATTACAGCTATTCCAGTATCCAACATTTTCATTAGATT  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCTGTAAAATTACAGCTATTCCAGTATCCAACATTTTCATTAGATT  987

seq1  TTACTCAAGTGATTCTATTACGTTGATGATGCCATCAATAGTCTGAAAAT  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCAAGTGATTCTATTACGTTGATGATGCCATCAATAGTCTGAAAAT  1037

seq1  TAGAGGTCCACAGATAATAATTCCTTAATTACTACATTTACCTTGAAGAG  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGTCCACAGATAATAATTCCTTAATTACTACATTTACCTTGAAGAG  1087

seq1  AGGAGACATTCTGCCTAGTATTAGAAGTCAGCTTGCAGCTCACATAGATT  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGACATTCTGCCTAGTATTAGAAGTCAGCTTGCAGCTCACATAGATT  1137

seq1  TTTATATTTACATGAATTTCCTAGAATATAGTTTTTTTTGTTTTTATTGC  1190
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATTTACATGAATTTCCTAGAATATAGTTTTTTTTGTTTTTATTGC  1187

seq1  AAGAATT  1197
      |||||||
seq2  AAGAATT  1194


seq1: chr13_79931449_79931794
seq2: B6Ng01-320M11.g_67_440

seq1  GAATTCTTGTAAACACAGTGGGAGAATGGAGACAGACAGGTTCCTAAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTAAACACAGTGGGAGAATGGAGACAGACAGGTTCCTAAATA  50

seq1  TCATTCTACATCTTGCTTAGGTTAGTCTATGAGATCCACATTCAAAGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTACATCTTGCTTAGGTTAGTCTATGAGATCCACATTCAAAGAGA  100

seq1  GAGTTTTTCTTAAAAAATTAAGCATAGAAAGTAATTGAGGAAAGACAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTTTCTTAAAAAATTAAGCATAGAAAGTAATTGAGGAAAGACAAGA  150

seq1  TATCAATTTTAGGATTCCACATGTGTGCATATACATATTTAAGTGCCAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAATTTTAGGATTCCACATGTGTGCATATACATATTTAAGTGCCAAT  200

seq1  GTTTATATATATATATATATATATATATGTATATATATATATATATATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATATATATATATATATATATATATGTATATATATATATATATATGT  250

seq1  ATGTGTATATATATATACACATATATATGTATGTGTATATATATGTATAC  300
      |||||||||| ||||||  |||||||||||||||||||||||||||||||
seq2  ATGTGTATATGTATATATGCATATATATGTATGTGTATATATATGTATAC  300

seq1  TTATACATATATATATATATACACACACACATGTATGTATATATAT----  346
       |||| ||||||||||||||| | | | |||| ||| |||||||||    
seq2  ATATATATATATATATATATATATATATACATATATATATATATATATAT  350

seq1  ------------------------  346
                              
seq2  ACACACACATGTATATATATATAT  374


| Home | SequenceCutter | Blast | Download |