BAC Information

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BAC

Clone NameB6Ng01-321J06
Chromosome13 (Build37)
Map Location 113,445,936 - 113,597,607
singlet/doubletdoublet
Overlap gene9130023D20Rik, Ppap2a
Upstream geneLOC100040666, Mier3, Map3k1, LOC668181, LOC100040716, LOC100041161, LOC100041175, Ankrd55, LOC100040725, Il6st, Il31ra, LOC100041240, Ddx4
Downstream geneLOC100041282, Skiv2l2, Dhx29, LOC667756, Ccnu, EG622408, EG622422, 2310016C16Rik, Cdc20b, Gzma, 1700084D21Rik, Gzmk, Esm1, BC067074, LOC100040888, Snag1, Hspb3, EG632832, LOC622701, LOC100040927, Arl15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-321J06.bB6Ng01-321J06.g
ACCGA110644GA110645
length1,1401,090
definitionB6Ng01-321J06.b B6Ng01-321J06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,445,936 - 113,446,885)(113,596,505 - 113,597,607)
sequence
gaattcagtaagtttccttaaacctggttcatttatttgcttttaattat
ctgtggaagtttgaatgagaaatgatccccactgacccaggtatttgacc
atttagttctcagttggttgtgatgatcagagaagcttggggaatgcagt
cctcctggagacagcgtatcagtagggcagcctttgctagtatatagcct
cacaccacttccagctcacacttgctgttttgtgccttcagtggcggatg
tgagctctcagcttgctgccccagcatcatacctgttgctggcttccatg
cgtccctgtcatgatggagtcatatcactctgaaaacacaagccaggaca
aattccttctcctataagtcaggctttagtcgtggtattttatcacaaca
atgaaaaagtaactaatacagtacacatatgagcatccacccacactggt
tactatcttgacggtttctggcattttatatttatactgtcagatgaggt
catagttccttaaacatccttggttcttattgatgtgtgatgtcattcga
ggacaaaggattaggtatttattccggtcttcataatatggcttgttttg
gttttgtttgttttcagaaattgaaaaaagaatgttttttttttctctct
ctctctcagcctatagtttctaacactatatggcaccaaaattcaggtta
cctgtggcagtgttaggaggcgatccaagcttaggtttctcctaaatcct
cagcgggtgagtttttcaagactcaattagggagctttttataaagggtc
cttcatctacacaagcctctgtccggggcttgcacagacctccaggtgcc
ttccaaagccaacagcctctggtcgtgaactgtagaaagaatcaccagag
ggacctgccctggtttcctgctccagaactgtggctctgagtgtcacatg
ctgagcccacagccggtgctgtggcagtaaggcaactgagacacttcctc
atgtgcagagcataactgtgaacaagaatgtcaagtcttgagcctccatt
cgtgaacctgatcagatagttgtgcctgctacagtggaccgtgtagcaac
ggtcctcagagactagtactaagctgcttgactgcaaggc
gaattcacagttcgtaaaacatatatggggaaagctctctaaacatttcc
atcgtggagtccaagtgaggcacatttcatgaaagccaactcaaccgcat
ggaaccaagcggggcaccaaaaaatagcagtgcctccagcctctactcct
gttccacgctacccatccaagacgagagaaacaccaccatcttaatctgg
cacaagcacgcgcagcttgacaaacgtctgttcatctgctgagactcttt
ctctccttctatatggaaacacagagaaaagttaaggaaacgaacccagc
caactttcatcagaagcaaaagacaggacctattcagctaccagcaaatg
tatgaaagacgtgaatgaatggatcaattttaggagaaaggggaagaagg
cacaaaagtgggttagactatgcagccagatgatttgcgtgtttgtttgt
ttgtttgtttgtttgtttttgaaagcaacccgtcttggagatgagcaaaa
agatggctacttagggacatcttaacaggggcaaaaggaggtcagcatcc
ttttatggtgatggatcagacaccagaatttagggaacaagtaacgagaa
tttataacagcctgccgtctgtttccgtcatcagattttaatctatactt
actgtgttttggcacaatgatgctttatttgggtcatggtaaggaaacct
gaattctcctcccaataaagccaacatgctatagaaagatggcttggtgg
ttaagagcacttgctcgtttagaggacccaggctcttggttcccaacacc
cacacagtggctcacaaccatctgttccggagattacgtatgatgctatc
tagtggactctgcaggcattacacacacacagtgcacataaactccaact
ggtgctctctctctctctctctctctctctctctcacacacacacacaca
cacacacaattaagcaacaaacctttagagacgagagttcacataacaag
ggctctgtttcatctgcatcaaagcatgtactgtgaccatgcgaaaagaa
aaactttctcagttctggtttgaccgatgggtattatctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_113445936_113446885
seq2: B6Ng01-321J06.b_247_1183

seq1  ACCACTTCCAGCTCACACTTGCTGTTTTGTGCCTTCAGTGGCGGATGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTTCCAGCTCACACTTGCTGTTTTGTGCCTTCAGTGGCGGATGTGA  50

seq1  GCTCTCAGCTTGCTGCCCCAGCATCATACCTGTTGCTGGCTTCCATGCGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCAGCTTGCTGCCCCAGCATCATACCTGTTGCTGGCTTCCATGCGT  100

seq1  CCCTGTCATGATGGAGTCATATCACTCTGAAAACACAAGCCAGGACAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTCATGATGGAGTCATATCACTCTGAAAACACAAGCCAGGACAAAT  150

seq1  TCCTTCTCCTATAAGTCAGGCTTTAGTCGTGGTATTTTATCACAACAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTCCTATAAGTCAGGCTTTAGTCGTGGTATTTTATCACAACAATG  200

seq1  AAAAAGTAACTAATACAGTACACATATGAGCATCCACCCACACTGGTTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTAACTAATACAGTACACATATGAGCATCCACCCACACTGGTTAC  250

seq1  TATCTTGACGGTTTCTGGCATTTTATATTTATACTGTCAGATGAGGTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTGACGGTTTCTGGCATTTTATATTTATACTGTCAGATGAGGTCAT  300

seq1  AGTTCCTTAAACATCCTTGGTTCTTATTGATGTGTGATGTCATTCGAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCTTAAACATCCTTGGTTCTTATTGATGTGTGATGTCATTCGAGGA  350

seq1  CAAAGGATTAGGTATTTATTCCGGTCTTCATAATATGGCTTGTTTTGGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGATTAGGTATTTATTCCGGTCTTCATAATATGGCTTGTTTTGGTT  400

seq1  TTGTTTGTTTTCAGAAATTGAAAAAAGAATGTTTTTTTTTTCTCTCTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGTTTTCAGAAATTGAAAAAAGAATGTTTTTTTTTTCTCTCTCTC  450

seq1  TCTCAGCCTATAGTTTCTAACACTATATGGCACCAAAATTCAGGTTACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGCCTATAGTTTCTAACACTATATGGCACCAAAATTCAGGTTACCT  500

seq1  GTGGCAGTGTTAGGAGGCGATCCAAGCTTAGGTTTCTCCTAAATCCTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCAGTGTTAGGAGGCGATCCAAGCTTAGGTTTCTCCTAAATCCTCAG  550

seq1  CGGGTGAGTTTTTCAAGACTCAATTAGGGAGCTTTTTATAAAGGGTCCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTGAGTTTTTCAAGACTCAATTAGGGAGCTTTTTATAAAGGGTCCTT  600

seq1  CATCTACACAAGCCTCTGTCCGGGGCTTGCACAGACCTCCAGGTGCCTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTACACAAGCCTCTGTCCGGGGCTTGCACAGACCTCCAGGTGCCTTC  650

seq1  CAAAGCCAACAGCCTCTGGTCGTGAACTGTAGAAAGAATCACCAGAGGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCCAACAGCCTCTGGTCGTGAACTGTAGAAAGAATCACCAGAGGGA  700

seq1  CCTGCCCTGG-TTCCTGCTCCAGAACTGTGGCTCTGAGTGTCACAATGCT  749
      |||||||||| ||||||||||||||||||||||||||||||||| |||||
seq2  CCTGCCCTGGTTTCCTGCTCCAGAACTGTGGCTCTGAGTGTCAC-ATGCT  749

seq1  GAGCCCACAGCCGGTGCTGTGGCAGTAAGGCAAACTGAGACAACTTCCTC  799
      ||||||||||||||||||||||||||||||| ||||||||| ||||||||
seq2  GAGCCCACAGCCGGTGCTGTGGCAGTAAGGC-AACTGAGAC-ACTTCCTC  797

seq1  ATGGTGCAGAGCATAACTGTG-ACA--GATGTCAAGGTCTTGAG-CTCCA  845
      || |||||||||||||||||| |||   ||||||| |||||||| |||||
seq2  AT-GTGCAGAGCATAACTGTGAACAAGAATGTCAA-GTCTTGAGCCTCCA  845

seq1  TCCGTGAACCCTGGTCCAGGATAGTTGTG-CTGCTACAGGTTGGGAACCG  894
      | |||||| |||| ||   |||||||||| |||||||||  |||  ||||
seq2  TTCGTGAA-CCTGATC--AGATAGTTGTGCCTGCTACAG--TGG--ACCG  888

seq1  GTGGTAGCAACGGTCCCTCAGAGACTAGTACTAAGGCTGGCCCTGAGCTG  944
         ||||||||||| ||||||||||||||||||| ||||  | ||| |||
seq2  --TGTAGCAACGGT-CCTCAGAGACTAGTACTAA-GCTG--CTTGA-CTG  931

seq1  CAAGGC  950
      ||||||
seq2  CAAGGC  937

seq1: chr13_113596505_113597607
seq2: B6Ng01-321J06.g_67_1156 (reverse)

seq1  CAGATAATACCCATCTGTGTCCAAACCAGAACTGAGAAAGTTTTTCTTTT  50
      ||||||||||||||| ||   |||||||||||||||||||||||||||||
seq2  CAGATAATACCCATCGGT---CAAACCAGAACTGAGAAAGTTTTTCTTTT  47

seq1  CGCATGGTCACCAGGTACATGCCTTTGATGGCAGATGAAACAGGAGCCCT  100
      |||||||||||   ||||||| ||||||| |||||||||||| |||||||
seq2  CGCATGGTCAC--AGTACATG-CTTTGAT-GCAGATGAAACA-GAGCCCT  92

seq1  TGGTTATTGTTGAACTTCTCGTCTCTAAAGGTTTGTTTGCTTAATTGTGT  150
      | |||||   ||||| ||||||||||||||||||| ||||||||||||||
seq2  T-GTTAT--GTGAAC-TCTCGTCTCTAAAGGTTTG-TTGCTTAATTGTGT  137

seq1  GTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGC  187

seq1  ACCAGTTGGAGTTTATGTGCACTGTGTGTGTGTAATGCCTGCAGAGTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTTGGAGTTTATGTGCACTGTGTGTGTGTAATGCCTGCAGAGTCCA  237

seq1  CTAGATAGCATCATACGTAATCTCCGGAACAGATGGTTGTGAGCCACTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATAGCATCATACGTAATCTCCGGAACAGATGGTTGTGAGCCACTGT  287

seq1  GTGGGTGTTGGGAACCAAGAGCCTGGGTCCTCTAAACGAGCAAGTGCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTGTTGGGAACCAAGAGCCTGGGTCCTCTAAACGAGCAAGTGCTCT  337

seq1  TAACCACCAAGCCATCTTTCTATAGCATGTTGGCTTTATTGGGAGGAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCACCAAGCCATCTTTCTATAGCATGTTGGCTTTATTGGGAGGAGAA  387

seq1  TTCAGGTTTCCTTACCATGACCCAAATAAAGCATCATTGTGCCAAAACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGTTTCCTTACCATGACCCAAATAAAGCATCATTGTGCCAAAACAC  437

seq1  AGTAAGTATAGATTAAAATCTGATGACGGAAACAGACGGCAGGCTGTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGTATAGATTAAAATCTGATGACGGAAACAGACGGCAGGCTGTTAT  487

seq1  AAATTCTCGTTACTTGTTCCCTAAATTCTGGTGTCTGATCCATCACCATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTCGTTACTTGTTCCCTAAATTCTGGTGTCTGATCCATCACCATA  537

seq1  AAAGGATGCTGACCTCCTTTTGCCCCTGTTAAGATGTCCCTAAGTAGCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGATGCTGACCTCCTTTTGCCCCTGTTAAGATGTCCCTAAGTAGCCA  587

seq1  TCTTTTTGCTCATCTCCAAGACGGGTTGCTTTCAAAAACAAACAAACAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTGCTCATCTCCAAGACGGGTTGCTTTCAAAAACAAACAAACAAA  637

seq1  CAAACAAACAAACACGCAAATCATCTGGCTGCATAGTCTAACCCACTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAACAAACACGCAAATCATCTGGCTGCATAGTCTAACCCACTTTT  687

seq1  GTGCCTTCTTCCCCTTTCTCCTAAAATTGATCCATTCATTCACGTCTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTTCTTCCCCTTTCTCCTAAAATTGATCCATTCATTCACGTCTTTC  737

seq1  ATACATTTGCTGGTAGCTGAATAGGTCCTGTCTTTTGCTTCTGATGAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATTTGCTGGTAGCTGAATAGGTCCTGTCTTTTGCTTCTGATGAAAG  787

seq1  TTGGCTGGGTTCGTTTCCTTAACTTTTCTCTGTGTTTCCATATAGAAGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTGGGTTCGTTTCCTTAACTTTTCTCTGTGTTTCCATATAGAAGGA  837

seq1  GAGAAAGAGTCTCAGCAGATGAACAGACGTTTGTCAAGCTGCGCGTGCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGAGTCTCAGCAGATGAACAGACGTTTGTCAAGCTGCGCGTGCTT  887

seq1  GTGCCAGATTAAGATGGTGGTGTTTCTCTCGTCTTGGATGGGTAGCGTGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCAGATTAAGATGGTGGTGTTTCTCTCGTCTTGGATGGGTAGCGTGG  937

seq1  AACAGGAGTAGAGGCTGGAGGCACTGCTATTTTTTGGTGCCCCGCTTGGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGAGTAGAGGCTGGAGGCACTGCTATTTTTTGGTGCCCCGCTTGGT  987

seq1  TCCATGCGGTTGAGTTGGCTTTCATGAAATGTGCCTCACTTGGACTCCAC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGCGGTTGAGTTGGCTTTCATGAAATGTGCCTCACTTGGACTCCAC  1037

seq1  GATGGAAATGTTTAGAGAGCTTTCCCCATATATGTTTTACGAACTGTGAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAAATGTTTAGAGAGCTTTCCCCATATATGTTTTACGAACTGTGAA  1087

seq1  TTC  1103
      |||
seq2  TTC  1090