BAC Information

Click to search

BAC

Clone NameB6Ng01-322C19
Chromosome13 (Build37)
Map Location 13,600,888 - 13,601,977
singlet/doubletsinglet
Overlap geneNid1
Upstream geneEdaradd, Ero1lb, LOC664862, EG238507, LOC100039744, EG630757, Prl2c3, LOC100039999, LOC100039754, Prl2c2, LOC434483, LOC674723, Prl2c5, LOC630611, LOC100039786, LOC385049, LOC630663, LOC100040108, Gpr137b, LOC664960
Downstream geneLyst, LOC100039831, Gng4, EG665000, EG665008, LOC630894, LOC100040205, B3galnt2, Tbce, Ggps1, LOC100040243, Arid4b, LOC100039916, Hecw1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-322C19.bB6Ng01-322C19.g
ACCGA111084GA111085
length1,1791,094
definitionB6Ng01-322C19.b B6Ng01-322C19.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaatagaggaatcttaaatggctgaaatacacttaaagaaatg
ttcaccatccttagccatcaataaaaagtaaatccaaattactttgagat
tccatcttatacctgtcagaatatcacaagcaacagttcatgctggtgag
gatgtggagcaagagaaacactcctccatcactggtgggagtgcaaaaaa
tattgaaatcaaaatggcagttacttagacagttgtaaatcaatttccct
caagacccaactataccactcttaggcatatacccaaaggatacttcatc
ctaccacaaacacacttgctcaactatgttcaccttggctttattcacaa
tagcaaaaaactggaaacaatctagatggctcttaagaggagaatggata
aagaaatttacacaatggagtattattcagttgtcaaaaaaattatatcc
taaaatctgcaggcaaatagaattagaaaaaaaaaatcattctgagtgag
gtaaatcagaccaagaaagataaatatggtatattttcatttataagggg
atgttagtcataaagtaaatgataaccaaactataacccataaactcaga
gatgctaggtaaagaggaagagacaggagcagaggggatgcagaaatctc
ctgaggaagaggtggaaagagttaagagccagaggggatggaggatacca
ggagaataaggccttttaaatcagccaaataaagtgcatataagctcaca
gagactgaagcagcaatcagagggcctacctgggtctgcaccatttcctc
tgtgtacatattctagctatgactctagtacttctatgggactcctaact
gggagaatgagtatgtctctgtctcttgtgcttgcttcggagactattgt
cctccttttgtgttgccatgtgcaacttcaatgatagttttttgctttat
cttatattttactttgtcatgtttgggttgtatctcttaggaacctgttc
ccccaccccttaggagagacaggaaaggagtggatctggagagaggatga
gaagacaggagagttagaggaggaaaccttgatggatattctcttatgag
aagagaattttttctatagaaagttaaacgggtgaaatccactagtgcct
gacctataggcttatactatgcagatgca
gaattccccccatccttgtcttttagactcttgttttctgacacaaagga
cccatttcttgcgtgaacaatgaccaacttgtatttgcttcacacaggca
cccatagggcagaatgcctgaacccagctcagcccggcagacgcaaagtt
ctcgaagggctccagtatcctttcgctgtgactagctatgggaagaattt
gtactacacagactggaagacgtatgtaggctgccgtcatgctggctggg
ccaaactatgcccttccctttgtctctatggaggtctttgcctcttgtct
tttctcctgactgttgaccctccagtgatccccctttgtcctggctgtca
gatatggaggagggtagaggaagagggctgtctaatcttagagggaacag
aggagccatttatcatacccaaacctgggccttcctgagctacctggggt
cacatggctggaggtctctttgattatgtcatacctctacatcaatgtag
tttttaaactgcaatattttcacagctgtttctggatcagaccgtcctca
aatggagggtcacaccaaggaagtagctggctaagagaggctatatgtca
cctggaatttagagcagaggggagagttagattgttttggccctttttta
aaaaagccagtgaactactggcttgacccagcctagggggagggagaaac
agatccacagagagcaagaccaccatgtcttttccaagccacagaagagg
ctgcctgaccccatggagaacatcagatgcatgtgcactccctgtgcttt
tgtgctttgcaggaattcagtgattgccatggaccttgctatatccaaag
agatggatactttccacccacacaagcagacccgggctatatggcatcac
catcgccctgtccagtgtccccaaggtaaacatccatgctgctgaatgga
ggtcaacactcagagtctctaagaagaaatcaggtggccctaagtacatc
caatgggcctgcttcctaataaggaatctcagcctgaatatcccttcctg
aagatctgggattttcccaccttcagggacttaatctagaacct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_13600888_13601977
seq2: B6Ng01-322C19.g_65_1158

seq1  GAATTCCCCCCATCCTTGTCTTTTAGACTCTTGTTTTCTGACACAAAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCCCATCCTTGTCTTTTAGACTCTTGTTTTCTGACACAAAGGA  50

seq1  CCCATTTCTTGCGTGAACAATGACCAACTTGTATTTGCTTCACACAGGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTTCTTGCGTGAACAATGACCAACTTGTATTTGCTTCACACAGGCA  100

seq1  CCCATAGGGCAGAATGCCTGAACCCAGCTCAGCCCGGCAGACGCAAAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATAGGGCAGAATGCCTGAACCCAGCTCAGCCCGGCAGACGCAAAGTT  150

seq1  CTCGAAGGGCTCCAGTATCCTTTCGCTGTGACTAGCTATGGGAAGAATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGAAGGGCTCCAGTATCCTTTCGCTGTGACTAGCTATGGGAAGAATTT  200

seq1  GTACTACACAGACTGGAAGACGTATGTAGGCTGCCGTCATGCTGGCTGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTACACAGACTGGAAGACGTATGTAGGCTGCCGTCATGCTGGCTGGG  250

seq1  CCAAACTATGCCCTTCCCTTTGTCTCTATGGAGGTCTTTGCCTCTTGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACTATGCCCTTCCCTTTGTCTCTATGGAGGTCTTTGCCTCTTGTCT  300

seq1  TTTCTCCTGACTGTTGACCCTCCAGTGATCCCCCTTTGTCCTGGCTGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCTGACTGTTGACCCTCCAGTGATCCCCCTTTGTCCTGGCTGTCA  350

seq1  GATATGGAGGAGGGTAGAGGAAGAGGGCTGTCTAATCTTAGAGGGAACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGGAGGAGGGTAGAGGAAGAGGGCTGTCTAATCTTAGAGGGAACAG  400

seq1  AGGAGCCATTTATCATACCCAAACCTGGGCCTTCCTGAGCTACCTGGGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCCATTTATCATACCCAAACCTGGGCCTTCCTGAGCTACCTGGGGT  450

seq1  CACATGGCTGGAGGTCTCTTTGATTATGTCATACCTCTACATCAATGTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGCTGGAGGTCTCTTTGATTATGTCATACCTCTACATCAATGTAG  500

seq1  TTTTTAAACTGCAATATTTTCACAGCTGTTTCTGGATCAGACCGTCCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAACTGCAATATTTTCACAGCTGTTTCTGGATCAGACCGTCCTCA  550

seq1  AATGGAGGGTCACACCAAGGAAGTAGCTGGCTAAGAGAGGCTATATGTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAGGGTCACACCAAGGAAGTAGCTGGCTAAGAGAGGCTATATGTCA  600

seq1  CCTGGAATTTAGAGCAGAGGGGAGAGTTAGATTGTTTTGGCCCTTTTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAATTTAGAGCAGAGGGGAGAGTTAGATTGTTTTGGCCCTTTTTTA  650

seq1  AAAAAGCCAGTGAACTACTGGCTTGACCCAGCCTAGGGGGAGGGAGAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGCCAGTGAACTACTGGCTTGACCCAGCCTAGGGGGAGGGAGAAAC  700

seq1  AGATCCACAGAGAGCAAGACCACCATGTCTTTTCCAAGCCACAGAAGAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCACAGAGAGCAAGACCACCATGTCTTTTCCAAGCCACAGAAGAGG  750

seq1  CTGCCTGACCCCATGGAGAACATCAGATGCATGTGCACTCCCTGTGCTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTGACCCCATGGAGAACATCAGATGCATGTGCACTCCCTGTGCTTT  800

seq1  TGTGCTTTGCAGGAATTCAGTGATTGCCATGGACCTTGCTATATCCAAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTTTGCAGGAATTCAGTGATTGCCATGGACCTTGCTATATCCAAAG  850

seq1  AGATGGATACCTTCCACCCACACAAGCAGACCC-GGCTATATGGCATCAC  899
      |||||||||| |||||||||||||||||||||| ||||||||||||||||
seq2  AGATGGATACTTTCCACCCACACAAGCAGACCCGGGCTATATGGCATCAC  900

seq1  CATCGCCCTGTCCCAGTGTCCCCAAGGT-AACATCCATGCTGCTGAATGG  948
      ||||||||||| |||||||||||||||| |||||||||||||||||||||
seq2  CATCGCCCTGT-CCAGTGTCCCCAAGGTAAACATCCATGCTGCTGAATGG  949

seq1  AGGTCAACACTCAGAGTCTCTAAGA--GAATCAGGGTGGCCTAAGTACAT  996
      |||||||||||||||||||||||||   |||||||  | |||||||||||
seq2  AGGTCAACACTCAGAGTCTCTAAGAAGAAATCAGGTGGCCCTAAGTACAT  999

seq1  CC-ATGGGCCTGCTTCCTA--TAGGTATCTCAGCCTGGATATCCCTTCCT  1043
      || ||||||||||||||||   ||| ||||||||||| ||||||||||||
seq2  CCAATGGGCCTGCTTCCTAATAAGGAATCTCAGCCTGAATATCCCTTCCT  1049

seq1  GAAGGATTCTTGGATTTTCCCACCTCAAGGAACTTAATCTAGAACCT  1090
      ||||   ||| ||||||||||||||  ||| ||||||||||||||||
seq2  GAAG--ATCTGGGATTTTCCCACCTTCAGGGACTTAATCTAGAACCT  1094