BAC Information

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BAC

Clone NameB6Ng01-322C24
Chromosome10 (Build37)13 (Build37)
Map Location 30,451,120 - 30,452,27711,993,811 - 11,994,326
singlet/doubletsingletsinglet
Overlap geneNcoa7
Upstream geneLOC623064, LOC674389, Gm232, LOC667696, LOC100040542, 2610036L11Rik, LOC212815, Trmt11, Hint3
Downstream geneLOC382354, Hey2, LOC654431, EG432448, Hddc2, Tpd52l1, LOC100041294, Ibrdc1, LOC666055, LOC667752, LOC100040638, Tcba1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-322C24.bB6Ng01-322C24.g
ACCGA111094GA111095
length1,1511,204
definitionB6Ng01-322C24.b B6Ng01-322C24.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(30,451,120 - 30,452,277)(11,993,811 - 11,994,326)
sequence
gaattcccagaatccacttgcctcacctcccacctttacctgcattatgt
cattttccatataaataaggggaacacccctccctctctctctttcccaa
taaactacctcccccccctctcccaataaacctctcacaggtggaactcc
ttgggcccagtgtgctgtgttcagacgcaagccataattttaacacatca
aaaaccttgggcgatctttctttaaacaaaaggctaagttacaaatgcaa
aaggcagccaattttatctttgtctcatagataagaaaggctaagaaaag
ctggaaccatttcccaaggtcacagggcagagtctagttgtggagcaggc
attcacaagtcaaggctagctccactgtcacaagctggcaggctgctgtc
ctaagggtgtttatacaacactgtctcctttgactttacagtatgatgga
ctgggctggggaattctaagaactctgaagaagggatggcctcatggtct
tggcaaggttgataaagagctggctcaaatttgatttgaatacagatctg
gattctggccttggtccgttcagtaattagctctgtgacttccttaggaa
tcatagcaaagtaaacagagacaagggactgagatttcttttaaggtctt
gcctgattttaacagttatagttggctgagaaaattaggaaatatgttaa
agctattctgatgtataaaaaaaaaatttaaatctatagtaaacctactt
aaaagtcttacacttcctcgagtttgccttaagactcacatgtggtgtat
tttctttccaatgtagaagtcccaaactttggaaagtccagaatgcaata
ggctgtatcaattatgtataaaatctctcaaaaaacaaaataataataac
aagataagccaacaacaacaacaacaaacacctgctgctctacaatttga
ggctaatgttctaggagaaagacataaaattccaaaattgatcaccatgg
gagatgtgtagtgagttcttttaatataaaacttctcccttcaactgact
tctagggaattaattctaacataaagacatagtcattataccatcagtca
tgaaaatgttacattataagaattctagtgatactcatcctgtgcaaaat
a
gaattcatgtccattcttcaatatgcaatgatccagtttgaccaacacct
ttttctagtgtatatttctggattctttaccaaaaataaggtgttcatgt
gtgtttgggtttatgtatggtacttgaatctgattctatcaatcattatg
tctgtttttattccaataccatgtggcttttattactattgctctgtagt
acaatttgaaattaggaatggtggaacctccagcagttcttctattatag
ctatcctgggttttgtttatttgtttgtttgcttgcttgcttgttttcca
tatgaatctgaacattggtccttcaacctctgtgaaaagttgtgttgaag
ttttggtggggactgattgttttggagttgatggccatttttactgcgtt
aatcctaccaaccaattagcatggacaatctttccatcttctgctatctt
cttcaaagtttttcatcaaagacttgaaattttttcatgaaagtctttca
cttgcttggttagagttactccaagatatttaatttatgtgcgagtattg
tgaaagtgttgtttccctgatttatttctctgggaaatataatgtgtata
tacaagggtgtactgattggttttgtgtcaacttgacacaagctggagtt
atcacagagaaaggagcttcagctgaggaaatgcctccatgagatccatc
tataaggcattttctcaattagtgatctagggggaaatgccccttgtggg
tgggactatccctgggctggtagtcttgggttctgtaagagagcaggctg
agcaaaccaggggaagcaagccagtaagaaacatctctccatggcctctc
catcagctcctgcttcctgacctgcttgagtccagacctgacttatgcac
actctcatattctctacaaataatgatactttgactctccttttcaattt
atatccctcttaatctccttcagttggcttatactctagctacatactaa
aaatgaatactgtatgaatagatacgaggaccgtggagaaccttaaaatt
attcctaaatttagtggggaattaactgccaaatttcacctcatttattt
gaagctgcgcctattaagatgtgacaattggccttcacagttagggaatg
ccttgtgactcctattcttccagagaactttcagacccctatatatataa
tatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_30451120_30452277
seq2: B6Ng01-322C24.b_44_1194

seq1  GAATTCCCAGAATCCACTTGCCTCACCTCCCACCTTTACCTGCATTATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAGAATCCACTTGCCTCACCTCCCACCTTTACCTGCATTATGT  50

seq1  CATTTTCCATATAAATAAGGGGAACACCCCTCCCTCTCTCTCTTTCCCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCCATATAAATAAGGGGAACACCCCTCCCTCTCTCTCTTTCCCAA  100

seq1  TAAACTACCTCCCCCCCCTCTCCCAATAAACCTCTCACAGGTGGAACTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTACCTCCCCCCCCTCTCCCAATAAACCTCTCACAGGTGGAACTCC  150

seq1  TTGGGCCCAGTGTGCTGTGTTCAGACGCAAGCCATAATTTTAACACATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCCCAGTGTGCTGTGTTCAGACGCAAGCCATAATTTTAACACATCA  200

seq1  AAAACCTTGGGCGATCTTTCTTTAAACAAAAGGCTAAGTTACAAATGCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCTTGGGCGATCTTTCTTTAAACAAAAGGCTAAGTTACAAATGCAA  250

seq1  AAGGCAGCCAATTTTATCTTTGTCTCATAGATAAGAAAGGCTAAGAAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAGCCAATTTTATCTTTGTCTCATAGATAAGAAAGGCTAAGAAAAG  300

seq1  CTGGAACCATTTCCCAAGGTCACAGGGCAGAGTCTAGTTGTGGAGCAGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAACCATTTCCCAAGGTCACAGGGCAGAGTCTAGTTGTGGAGCAGGC  350

seq1  ATTCACAAGTCAAGGCTAGCTCCACTGTCACAAGCTGGCAGGCTGCTGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACAAGTCAAGGCTAGCTCCACTGTCACAAGCTGGCAGGCTGCTGTC  400

seq1  CTAAGGGTGTTTATACAACACTGTCTCCTTTGACTTTACAGTATGATGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGGTGTTTATACAACACTGTCTCCTTTGACTTTACAGTATGATGGA  450

seq1  CTGGGCTGGGGAATTCTAAGAACTCTGAAGAAGGGATGGCCTCATGGTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCTGGGGAATTCTAAGAACTCTGAAGAAGGGATGGCCTCATGGTCT  500

seq1  TGGCAAGGTTGATAAAGAGCTGGCTCAAATTTGATTTGAATACAGATCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAGGTTGATAAAGAGCTGGCTCAAATTTGATTTGAATACAGATCTG  550

seq1  GATTCTGGCCTTGGTCCGTTCAGTAATTAGCTCTGTGACTTCCTTAGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTGGCCTTGGTCCGTTCAGTAATTAGCTCTGTGACTTCCTTAGGAA  600

seq1  TCATAGCAAAGTAAACAGAGACAAGGGACTGAGATTTCTTTTAAGGTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGCAAAGTAAACAGAGACAAGGGACTGAGATTTCTTTTAAGGTCTT  650

seq1  GCCTGATTTTAACAGTTATAGTTGGCTGAGAAAATTAGGAAATATGTTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGATTTTAACAGTTATAGTTGGCTGAGAAAATTAGGAAATATGTTAA  700

seq1  AGCTATTCTGATGTATAAAAAAAAAATTTAAATCTATAGTAAACCTACTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATTCTGATGTATAAAAAAAAAATTTAAATCTATAGTAAACCTACTT  750

seq1  AAAAGTCTTACACTTCCTCGAGTTTGCCTTAAGACTCACATGTGGTGTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTCTTACACTTCCTCGAGTTTGCCTTAAGACTCACATGTGGTGTAT  800

seq1  TTTCTTTCCAATGTAGAAGTCCCAAACTTTGGAAAGTCCAGAATGCAATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCCAATGTAGAAGTCCCAAACTTTGGAAAGTCCAGAATGCAATA  850

seq1  GGCTGTATCAATTATGTATAAAATCTCTCAAAAAACAAAATAATAATAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTATCAATTATGTATAAAATCTCTCAAAAAACAAAATAATAATAAC  900

seq1  AAGATAAGCCAACAACAACAACAACAAAACACCTGCTGCTCTACAATTTG  950
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AAGATAAGCCAACAACAACAACAAC-AAACACCTGCTGCTCTACAATTTG  949

seq1  AGGCTAATGTTCTAGGAAGAAAGACATAAAATTCCAAAATTGATCAACCA  1000
      |||||||||||||||| |||||||||||||||||||||||||||| ||||
seq2  AGGCTAATGTTCTAGG-AGAAAGACATAAAATTCCAAAATTGATC-ACCA  997

seq1  TGGGAGATGTGTAGTGAGTTCTTTTAATATAAAACTTCTCCCTCAAACTG  1050
      |||||||||||||||||||||||||||||||||||||||||||  |||||
seq2  TGGGAGATGTGTAGTGAGTTCTTTTAATATAAAACTTCTCCCTTCAACTG  1047

seq1  ACTTCTAGGGAAATAAATTCTAACATAAAAGACATAGTCAATTATAACAT  1100
      |||||||||| ||| ||||||||||| |||||||||||| |||||| |||
seq2  ACTTCTAGGG-AATTAATTCTAACAT-AAAGACATAGTC-ATTATACCAT  1094

seq1  CAGTTCATGAAAAATGTTACATAAT-AGAATTCTAGTGATACTTCATCTT  1149
      ||| ||||| |||||||||||| || |||||||||||||||| ||||| |
seq2  CAG-TCATG-AAAATGTTACATTATAAGAATTCTAGTGATAC-TCATCCT  1141

seq1  GTG-AAAATA  1158
      ||| ||||||
seq2  GTGCAAAATA  1151

seq1: chr13_11993811_11994326
seq2: B6Ng01-322C24.g_899_1265

seq1  TCCATGGCCTCTGCATCAGCTCCTGTTTCCTGACCTACTTGAGTTCCAGT  50
      |||||||||||| |||||||||||| |||||||||| |||||| ||||| 
seq2  TCCATGGCCTCTCCATCAGCTCCTGCTTCCTGACCTGCTTGAG-TCCAGA  49

seq1  CCTGATTT----CCATTGGTGATAAACAGCAATGTAGAAGTATAAGCTGA  96
      ||||| ||     || |  | |||  |     | || ||  ||||  || 
seq2  CCTGACTTATGCACACT-CTCATATTC-----TCTACAA--ATAA--TG-  88

seq1  ATAAACCCTTTCCTCCCCAACTTGCTTCTTGGTCATGATGTTTTGTGCAG  146
      |||   | ||  ||| ||                      ||||      
seq2  ATA---CTTTGACTCTCC----------------------TTTT------  107

seq1  GAATAGAAATCCCGACTAAGACAGGGATTAATCAAGGAGGTATCATAGCT  196
       |||  | |||||              ||||||         ||    ||
seq2  CAATTTATATCCC------------TCTTAATC---------TC----CT  132

seq1  GTACTTGG-AAAGAGTCTA-TTGCCCACCAGGAAAAGTGTGAGCATGGGT  244
        | ||||   | | ||||  | |  || |  ||||   |||  |   ||
seq2  TCAGTTGGCTTATACTCTAGCTACATACTA--AAAA---TGAATA-CTGT  176

seq1  CAGAATTTGTCACAGAGGAAAGT----ATCCATACAATT----TTAGATT  286
        ||| | |  || |||||  ||    | || || ||||     || |||
seq2  ATGAA-TAGATAC-GAGGACCGTGGAGAACCTTAAAATTATTCCTAAATT  224

seq1  TGGGGGGGGAAAAAAAGCCAGGTGTGGTGGTGCACGCCTTTAATCCCAGC  336
      | | |||| |  ||  ||||                     |||  || |
seq2  TAGTGGGGAATTAACTGCCA---------------------AATTTCACC  253

seq1  ACTTGGGAGGCAGAGGCGGGTGGATTTCTGAATTCGAGGCCAAGCCTGGT  386
       |                     ||||    ||| || ||   ||||   
seq2  TC---------------------ATTT----ATTTGAAGCTGCGCCT--A  276

seq1  CTACAAAGTGAGTTCCAGGAGAGCCAGGGCTACACAGAGAAACCCTGTTT  436
       ||  | ||||    ||         || || |||||           ||
seq2  TTAAGATGTGA----CA------ATTGGCCTTCACAG-----------TT  305

seq1  CAAAAAGAATAGCCAGGCAAGTCAGTAGTAGTTTAAGATATGGAAGGTTT  486
         |  |||| |||  |  | ||  || |  ||  |||            
seq2  ---AGGGAAT-GCCTTGTGACTC-CTA-TTCTTCCAGA------------  337

seq1  AAATTTTCCTAGTACTATATATATAATATG  516
       || ||||  |   ||||||||||||||||
seq2  GAACTTTCAGACCCCTATATATATAATATG  367