BAC Information

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BAC

Clone NameB6Ng01-322H09
Chromosome13 (Build37)
Map Location 86,968,682 - 87,112,455
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC675662, Cox7c, LOC100042887, LOC100042893
Downstream geneLOC675707
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-322H09.bB6Ng01-322H09.g
ACCGA111296GA111297
length1,1481,132
definitionB6Ng01-322H09.b B6Ng01-322H09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,111,298 - 87,112,455)(86,968,682 - 86,969,816)
sequence
gaattcctatgtaattgtctatttctagaaaacaaataaatatggcaggt
ttcctgcctttagctaacattaatataaatccaattacgtttccatattc
cccttggtcccattttcttcccatgaatcttgctttaatatcttaggcct
gcagtaatactgttattccctgaagaacaatggcacataacttggtctcc
cctctataaatatcatgttattcatttttaaaaacatggttaaagttcta
ctctgttcctacaatgatttttcctgttatattatgtacatgttaatgat
aaaaacagacagaccttcatcaacccctgcatccttagtaaaatcattag
attatatggatctgtaaactgcatgaaaatcatcttgtgtgcctaataaa
ttttctgtatttatgcaccattgatgaatttcaaagttaatgatttctgt
caagtacatagccagtgttttatatctgccttctctttccttaaatattt
gcagaggtgttatttggaaaagaatcttctcaaaattaatacaaatatct
agaatctaggtaattaatttccttgcttacaaggtgatgattactgtatg
atctgattgcttgaagctaatttgtaactatgcttctcatttggattctt
gcatactatagtaatagaaagtgactcttcaacgttgccgtaatcaattg
ctctaaatttaatgatttcaggcaaataaaaatattgatccccacttctg
atttcaaactctgtttttgtttttgttttttgtttgtttggttttgattt
ttggttattttttgtatttaagtgactctttcttgtttgttctaacccca
tcatttgctccaaaattctcctttccccttctttcctcctctcttttcca
ttctctttctcttacggtaattcatgatattggattagactgtgttgact
ataagaaatatttttactcttataaaataaatgtacaatttatgggcttt
gtatactgtattcagtacttgaggacatttttctactgactgataattga
catattcacttttgaggtatttgagatgttcagttaaaatctgatttgtg
ctacagaaatgtccaaatatactgtgttatttcacttagagcactcaa

gaattcctagcatgcatttggtatttagatcttctgattgaacaagtgtt
gttctccctattatgagaaataattttttgaactacacttagaagaaatg
caacaatgtatggattttctgatgaaaaataatatttttaatatttaagt
aaatgtcaacaatatttctgatgtatttgctcctactgaaaagcagctgt
aatgtccactgaacagtaattgctgtgtggatgttttcaccagccttgac
ttgcattgctacagctgtgtcctttcagggatatatttttatacctgtcc
aggctttgtgatcagcttgtgactggatttagaaaaaataaatgtatata
gatatgcagagcgtagtttcatcttttcctatgctgtagatttattcttt
tgtgaatagaagaattgcctaatttttctcattcaattttaagaaggtag
tgatttacatttttatctaaacttatccatatttttttatcttgaccaaa
ataatctatccctattctcattgtacaaatacacccaggactgatatatt
ttttatttggagagagtagaaagtagcaaagacatggtagaaactgaaat
cacagccttttattgcctgacctacttctgagttttaagtatataaaatg
cactaagattattgtagagattttgactatcattcaaaacaaagacatca
ggaaggtcaaagatatgattaaatataagaaaattcatgttaaagtgatg
actatggaaatatgctaagaaataacagcaacacagaacagcaccagaat
tagaatgatgatttactattctgggttggaaatatagttaagtatagtag
attgttaaggaacaaatggtagatagactgcataaagaaatgagatacat
attgtattacaagtgaacattctaatggaaaaatgtatactcaggtaaac
aataataaaagacaatcatagctatagctttcagttttccttaactccta
taaagctgatttcataaactggaagaagtaagatagagatgagagaattg
tttagcagcctgaaagaaaaaaacattccgtaaaatgacaactctgtgca
gcaattctagattaacaggctgtagaatttaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_87111298_87112455
seq2: B6Ng01-322H09.b_45_1192 (reverse)

seq1  TTGAGTGCTTCTTATAGGTGAAATACACACATATATTTTTGGACATTTCT  50
      ||||||||    | || |||||||| |||||  ||| |||||||||||||
seq2  TTGAGTGC----TCTAAGTGAAATA-ACACA-GTATATTTGGACATTTCT  44

seq1  GTAGCACAAATCAGATTTTTTAAACTTCACATCTCAAATTACCTCAAAAG  100
      |||||||||||||||||||   ||||  |||||||||| |||||||||||
seq2  GTAGCACAAATCAGATTTT---AACTGAACATCTCAAA-TACCTCAAAAG  90

seq1  TGAATATGTCAATTATCAGTCAGTAG-AAAATGTCCTTCAAGTACTTGAA  149
      |||||||||||||||||||||||||| ||||||||| |||||||| ||||
seq2  TGAATATGTCAATTATCAGTCAGTAGAAAAATGTCC-TCAAGTAC-TGAA  138

seq1  TACAGTATACAAAG-CCATAAATTGTACATTTATTTTATAAGAGTAAAAA  198
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TACAGTATACAAAGCCCATAAATTGTACATTTATTTTATAAGAGTAAAAA  188

seq1  TATTTCTTATAGTCAACACAGTCTAATCCAATATCATGAATTACCGTAAG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTTATAGTCAACACAGTCTAATCCAATATCATGAATTACCGTAAG  238

seq1  AGAAAGAGAATGGAAAAGAGAGGAGGAAAGAAGGGGAAAGGAGAATTTTG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAGAATGGAAAAGAGAGGAGGAAAGAAGGGGAAAGGAGAATTTTG  288

seq1  GAGCAAATGATGGGGTTAGAACAAACAAGAAAGAGTCACTTAAATACAAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAAATGATGGGGTTAGAACAAACAAGAAAGAGTCACTTAAATACAAA  338

seq1  AAATAACCAAAAATCAAAACCAAACAAACAAAAAACAAAAACAAAAACAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAACCAAAAATCAAAACCAAACAAACAAAAAACAAAAACAAAAACAG  388

seq1  AGTTTGAAATCAGAAGTGGGGATCAATATTTTTATTTGCCTGAAATCATT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGAAATCAGAAGTGGGGATCAATATTTTTATTTGCCTGAAATCATT  438

seq1  AAATTTAGAGCAATTGATTACGGCAACGTTGAAGAGTCACTTTCTATTAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTAGAGCAATTGATTACGGCAACGTTGAAGAGTCACTTTCTATTAC  488

seq1  TATAGTATGCAAGAATCCAAATGAGAAGCATAGTTACAAATTAGCTTCAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTATGCAAGAATCCAAATGAGAAGCATAGTTACAAATTAGCTTCAA  538

seq1  GCAATCAGATCATACAGTAATCATCACCTTGTAAGCAAGGAAATTAATTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCAGATCATACAGTAATCATCACCTTGTAAGCAAGGAAATTAATTA  588

seq1  CCTAGATTCTAGATATTTGTATTAATTTTGAGAAGATTCTTTTCCAAATA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGATTCTAGATATTTGTATTAATTTTGAGAAGATTCTTTTCCAAATA  638

seq1  ACACCTCTGCAAATATTTAAGGAAAGAGAAGGCAGATATAAAACACTGGC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTCTGCAAATATTTAAGGAAAGAGAAGGCAGATATAAAACACTGGC  688

seq1  TATGTACTTGACAGAAATCATTAACTTTGAAATTCATCAATGGTGCATAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTACTTGACAGAAATCATTAACTTTGAAATTCATCAATGGTGCATAA  738

seq1  ATACAGAAAATTTATTAGGCACACAAGATGATTTTCATGCAGTTTACAGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGAAAATTTATTAGGCACACAAGATGATTTTCATGCAGTTTACAGA  788

seq1  TCCATATAATCTAATGATTTTACTAAGGATGCAGGGGTTGATGAAGGTCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATATAATCTAATGATTTTACTAAGGATGCAGGGGTTGATGAAGGTCT  838

seq1  GTCTGTTTTTATCATTAACATGTACATAATATAACAGGAAAAATCATTGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTTTTTATCATTAACATGTACATAATATAACAGGAAAAATCATTGT  888

seq1  AGGAACAGAGTAGAACTTTAACCATGTTTTTAAAAATGAATAACATGATA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACAGAGTAGAACTTTAACCATGTTTTTAAAAATGAATAACATGATA  938

seq1  TTTATAGAGGGGAGACCAAGTTATGTGCCATTGTTCTTCAGGGAATAACA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAGAGGGGAGACCAAGTTATGTGCCATTGTTCTTCAGGGAATAACA  988

seq1  GTATTACTGCAGGCCTAAGATATTAAAGCAAGATTCATGGGAAGAAAATG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTACTGCAGGCCTAAGATATTAAAGCAAGATTCATGGGAAGAAAATG  1038

seq1  GGACCAAGGGGAATATGGAAACGTAATTGGATTTATATTAATGTTAGCTA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCAAGGGGAATATGGAAACGTAATTGGATTTATATTAATGTTAGCTA  1088

seq1  AAGGCAGGAAACCTGCCATATTTATTTGTTTTCTAGAAATAGACAATTAC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAGGAAACCTGCCATATTTATTTGTTTTCTAGAAATAGACAATTAC  1138

seq1  ATAGGAATTC  1158
      ||||||||||
seq2  ATAGGAATTC  1148


seq1: chr13_86968682_86969816
seq2: B6Ng01-322H09.g_66_1197

seq1  GAATTCCTAGCATGCATTTGGTATTTAGATCTTCTGATTGAACAAGTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAGCATGCATTTGGTATTTAGATCTTCTGATTGAACAAGTGTT  50

seq1  GTTCTCCCTATTATGAGAAATAATTTTTTGAACTACACTTAGAAGAAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCCCTATTATGAGAAATAATTTTTTGAACTACACTTAGAAGAAATG  100

seq1  CAACAATGTATGGATTTTCTGATGAAAAATAATATTTTTAATATTTAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAATGTATGGATTTTCTGATGAAAAATAATATTTTTAATATTTAAGT  150

seq1  AAATGTCAACAATATTTCTGATGTATTTGCTCCTACTGAAAAGCAGCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTCAACAATATTTCTGATGTATTTGCTCCTACTGAAAAGCAGCTGT  200

seq1  AATGTCCACTGAACAGTAATTGCTGTGTGGATGTTTTCACCAGCCTTGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCCACTGAACAGTAATTGCTGTGTGGATGTTTTCACCAGCCTTGAC  250

seq1  TTGCATTGCTACAGCTGTGTCCTTTCAGGGATATATTTTTATACCTGTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATTGCTACAGCTGTGTCCTTTCAGGGATATATTTTTATACCTGTCC  300

seq1  AGGCTTTGTGATCAGCTTGTGACTGGATTTAGAAAAAATAAATGTATATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTTGTGATCAGCTTGTGACTGGATTTAGAAAAAATAAATGTATATA  350

seq1  GATATGCAGAGCGTAGTTTCATCTTTTCCTATGCTGTAGATTTATTCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGCAGAGCGTAGTTTCATCTTTTCCTATGCTGTAGATTTATTCTTT  400

seq1  TGTGAATAGAAGAATTGCCTAATTTTTCTCATTCAATTTTAAGAAGGTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAATAGAAGAATTGCCTAATTTTTCTCATTCAATTTTAAGAAGGTAG  450

seq1  TGATTTACATTTTTATCTAAACTTATCCATATTTTTTTATCTTGACCAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTACATTTTTATCTAAACTTATCCATATTTTTTTATCTTGACCAAA  500

seq1  ATAATCTATCCCTATTCTCATTGTACAAATACACCCAGGACTGATATATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCTATCCCTATTCTCATTGTACAAATACACCCAGGACTGATATATT  550

seq1  TTTTATTTGGAGAGAGTAGAAAGTAGCAAAGACATGGTAGAAACTGAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTGGAGAGAGTAGAAAGTAGCAAAGACATGGTAGAAACTGAAAT  600

seq1  CACAGCCTTTTATTGCCTGACCTACTTCTGAGTTTTAAGTATATAAAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCCTTTTATTGCCTGACCTACTTCTGAGTTTTAAGTATATAAAATG  650

seq1  CACTAAGATTATTGTAGAGATTTTGACTATCATTCAAAACAAAGACATCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAAGATTATTGTAGAGATTTTGACTATCATTCAAAACAAAGACATCA  700

seq1  GGAAGGTCAAAGATATGATTAAATATAAGAAAATTCATGTTAAAGTGATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGTCAAAGATATGATTAAATATAAGAAAATTCATGTTAAAGTGATG  750

seq1  ACTATGGAAATATGCTAAGAAATAACAGCAACACAGAACAGCACCAGAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGGAAATATGCTAAGAAATAACAGCAACACAGAACAGCACCAGAAT  800

seq1  TAGAATGATGATTTACTATTCTGGGTTGGAAATATAGTTAAGTATAGTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATGATGATTTACTATTCTGGGTTGGAAATATAGTTAAGTATAGTAG  850

seq1  ATTGTTAAGGAACAAATGGTAGATAGACTGCATAAAGAAATGAGATACAA  900
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ATTGTTAAGGAACAAATGGTAGATAGACTGCATAAAGAAATGAGATAC-A  899

seq1  TATTGTATTACAAGTGAACATTCTAATGGAAAAATGTATACTCAGGGTAA  950
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TATTGTATTACAAGTGAACATTCTAATGGAAAAATGTATACTCA-GGTAA  948

seq1  ACAATAATAAAAGACAATCATAGCTATAGCTTTCAGGTTTTCCTTAACTC  1000
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ACAATAATAAAAGACAATCATAGCTATAGCTTTCA-GTTTTCCTTAACTC  997

seq1  CTATAAAGCTGATTTCATAAACTGG-AGAAGTAGGATAGAGATGAGAGAA  1049
      ||||||||||||||||||||||||| ||||||| ||||||||||||||||
seq2  CTATAAAGCTGATTTCATAAACTGGAAGAAGTAAGATAGAGATGAGAGAA  1047

seq1  TTG-TTAGCAGGCCTGAAAG--AAAAACATTCCGTAAAATGAACACTCTG  1096
      ||| |||||| |||||||||  ||||||||||||||||||||  ||||||
seq2  TTGTTTAGCA-GCCTGAAAGAAAAAAACATTCCGTAAAATGACAACTCTG  1096

seq1  TGCAGCAATTCTAGGATTAACAAGGCCTGTAGAATTTAA  1135
      ||||||||||||| ||||||||  | |||||||||||||
seq2  TGCAGCAATTCTA-GATTAACA--GGCTGTAGAATTTAA  1132


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