BAC Information

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BAC

Clone NameB6Ng01-322O03
Chromosome13 (Build37)
Map Location 66,873,506 - 67,001,540
singlet/doubletdoublet
Overlap geneLOC666027, LOC100042492, LOC100041947, EG382769, LOC666052, EG432768, LOC666061
Upstream geneLOC665851, Vmn2r-ps99, LOC628794, EG665897, LOC100041855, EG628746, LOC100042434, LOC100041892, EG665974, LOC100041915, 2410141K09Rik, C330014B19Rik, Mzf6d, Vmn2r-ps106
Downstream geneUqcrb, Mterfd1, Ptdss1, Zfp712, Zfp708, Zfp759, Rsl1, LOC674699, Zfp455, Zfp458, Zfp457, A230042K10Rik, E130120F12Rik, Zfp456, 2810487A22Rik, Zfp459, C330011K17Rik, LOC666098, 9630025I21Rik, Zfp817, Zfp87, Zfp748, A530054K11Rik, LOC328277, 3830402I07Rik, EG666137, Zfp85-rs1, LOC674597, Zfp273, BC048507
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-322O03.bB6Ng01-322O03.g
ACCGA111607GA111608
length9771,186
definitionB6Ng01-322O03.b B6Ng01-322O03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,000,563 - 67,001,540)(66,873,506 - 66,874,423)
sequence
gaattcaattcaaacgcctactgtcataattattgttatcatttttctga
caatttttttcaagacttgtaagatatttttagttgatgcttagctagag
atgaagggagccaatttaatcatctcttcattggctagataactagccag
cttactgaaagatacaacattttatactggctgaatagtaagctttagat
tccctttctaggctcctggctatacaggtgtgagacaagggatcaggcaa
ccagcactgaacagttgggccatcagctttcaaagtgaatgatggaaaga
agggaaagtttaccccaggttaattaaatacatgacttgggacacagcct
ttcagaacattgctctctgcctagatttattttgcatcctgccatttaga
aaaaaaagtctgtattccaatatgggcttatataacttacctgtgtatgt
acaggtgcacatgccctatgctaatcagtaatcagtaaataaataacaaa
ttaggcatttggaaaacaacagagaaaaagcacaaaggcaaattatgctt
ttatgttcctttaagaactaggagctcagggagtcttgtggaagaattgg
gggaagttttgtgggacccaaggaggatgggccctcctcagggagaccaa
cagaatggattaatctgggctcccagagattgaaccaccaaccagagagt
gagcatgggctggatctagactactcgtgtagcagacgtgaggcttggtc
ttaattacggtcccccaacaactggagcagggactgtctccaaacctgtt
gcctgcctgtggatcctcttcccctgagtgggccatcttgtctggccttg
tgtgggatggtgtgcctggtcttgaacttctttgatgtgccatggtgagg
tggtactgggtgggagggagctctccctctctttgaggaaagggagagga
ctggggggtgctgatacagggacatgg
gaattccttgatccatttagacttgagctttgtacaaggagacaagaatg
aatcaattcacacccttccacatgataactgccagttgtgcctgcaccat
ttgttgaaaatgctgtctttttttccactggatggttttagctcccttgt
caaagatcaagtgaccttaggtgtgtgagttcatttctgagtcttcaatt
ctattccattgttctagctgtttgtcgctgtactagtaagatgaactttt
tatcacaattgctctgtattacagtttgaggtcaggcaaggtgattccac
cagaggttcttttatcattgagaatagcttttgctatcctaggtcttttt
gttattccagatgaatttgcaaattgccctttctaattcgatgaagaatt
tagttggaattttgatggggattgcattgtatctatagattgcttttggt
aagatagccatttttactatattgatccttccaatctatgagcatgggag
atctttccatcttctgaaatcctctttgatttctttcttcagagaattca
agttcttatcatacatatctttcattttcttagttagaatcacaccaagg
tatttcatattatttgtgactattgtgaagggtgttgtttccctaatttc
tttctcatctggtttatcctttgtgtagagtataaggccttggcttcact
caatatactgtgaccaaggtacataagtaaataaacagttttctcacatg
tttctttggctatggtggtttttacagcaacagaatctaagacatcacct
aaatggtaaattgccactgttgggattttgaatatcatagattcctgatg
caataaaaggcactgatttgaaaagagaaagaagaatgcatgttagcaga
gtgagaagcaccgtgacagtaatgcatgtgatagcacagaagcgctgcac
tttgggatagctttacatgtactaggagatgctagataccagataacata
caaagacggaacattctatgaaaagaacattggagattcagattgtgctg
caataagctttgtaatgtatgtgaagaacagttccttatgaaatgactgg
tgtttcatagtgagaaatcactatgaaattctcccagacttccagtgagg
tcagtgatctatttgcacatataactaccctctaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_67000563_67001540
seq2: B6Ng01-322O03.b_46_1022 (reverse)

seq1  CCATTTCCCAGTATCAGCACCCCCAGTTCCTCTCCCTCTCCTCAAAGAGA  50
      |||| |||| ||||||||||||||   |||||||||| ||||||||||||
seq2  CCATGTCCCTGTATCAGCACCCCCCAGTCCTCTCCCTTTCCTCAAAGAGA  50

seq1  TGGGAGAGCTCCCTCCCACCCAGTACCACCTCACCATGGCACATCAAAGA  100
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -GGGAGAGCTCCCTCCCACCCAGTACCACCTCACCATGGCACATCAAAGA  99

seq1  AGTTCAAGACCAGGCACACCATCCCACACAAGGCCAGACAAGATGGCCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAAGACCAGGCACACCATCCCACACAAGGCCAGACAAGATGGCCCA  149

seq1  CTCAGGGGAAGAGGATCCACAGGCAGGCAACAGGTTTGGAGACAGTCCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGGGAAGAGGATCCACAGGCAGGCAACAGGTTTGGAGACAGTCCCT  199

seq1  GCTCCAGTTGTTGGGGGACCGTAATTAAGACCAAGCCTCACGTCTGCTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAGTTGTTGGGGGACCGTAATTAAGACCAAGCCTCACGTCTGCTAC  249

seq1  ACGAGTAGTCTAGATCCAGCCCATGCTCACTCTCTGGTTGGTGGTTCAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGTAGTCTAGATCCAGCCCATGCTCACTCTCTGGTTGGTGGTTCAAT  299

seq1  CTCTGGGAGCCCAGATTAATCCATTCTGTTGGTCTCCCTGAGGAGGGCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGGAGCCCAGATTAATCCATTCTGTTGGTCTCCCTGAGGAGGGCCC  349

seq1  ATCCTCCTTGGGTCCCACAAAACTTCCCCCAATTCTTCCACAAGACTCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCCTTGGGTCCCACAAAACTTCCCCCAATTCTTCCACAAGACTCCC  399

seq1  TGAGCTCCTAGTTCTTAAAGGAACATAAAAGCATAATTTGCCTTTGTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTCCTAGTTCTTAAAGGAACATAAAAGCATAATTTGCCTTTGTGCT  449

seq1  TTTTCTCTGTTGTTTTCCAAATGCCTAATTTGTTATTTATTTACTGATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCTGTTGTTTTCCAAATGCCTAATTTGTTATTTATTTACTGATTA  499

seq1  CTGATTAGCATAGGGCATGTGCACCTGTACATACACAGGTAAGTTATATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTAGCATAGGGCATGTGCACCTGTACATACACAGGTAAGTTATATA  549

seq1  AGCCCATATTGGAATACAGACTTTTTTTTCTAAATGGCAGGATGCAAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCATATTGGAATACAGACTTTTTTTTCTAAATGGCAGGATGCAAAAT  599

seq1  AAATCTAGGCAGAGAGCAATGTTCTGAAAGGCTGTGTCCCAAGTCATGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTAGGCAGAGAGCAATGTTCTGAAAGGCTGTGTCCCAAGTCATGTA  649

seq1  TTTAATTAACCTGGGGTAAACTTTCCCTTCTTTCCATCATTCACTTTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTAACCTGGGGTAAACTTTCCCTTCTTTCCATCATTCACTTTGAA  699

seq1  AGCTGATGGCCCAACTGTTCAGTGCTGGTTGCCTGATCCCTTGTCTCACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGATGGCCCAACTGTTCAGTGCTGGTTGCCTGATCCCTTGTCTCACA  749

seq1  CCTGTATAGCCAGGAGCCTAGAAAGGGAATCTAAAGCTTACTATTCAGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTATAGCCAGGAGCCTAGAAAGGGAATCTAAAGCTTACTATTCAGCC  799

seq1  AGTATAAAATGTTGTATCTTTCAGTAAGCTGGCTAGTTATCTAGCCAATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATAAAATGTTGTATCTTTCAGTAAGCTGGCTAGTTATCTAGCCAATG  849

seq1  AAGAGATGATTAAATTGGCTCCCTTCATCTCTAGCTAAGCATCAACTAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGATGATTAAATTGGCTCCCTTCATCTCTAGCTAAGCATCAACTAAA  899

seq1  AATATCTTACAAGTCTTGAAAAAAATTGTCAGAAAAATGATAACAATAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCTTACAAGTCTTGAAAAAAATTGTCAGAAAAATGATAACAATAAT  949

seq1  TATGACAGTAGGCGTTTGAATTGAATTC  978
      ||||||||||||||||||||||||||||
seq2  TATGACAGTAGGCGTTTGAATTGAATTC  977

seq1: chr13_66873506_66874423
seq2: B6Ng01-322O03.g_357_1253

seq1  GGTGATTCCACCAGAGGTTCTTTTATCATTGAGAATAGCTTTTGCTATCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATTCCACCAGAGGTTCTTTTATCATTGAGAATAGCTTTTGCTATCC  50

seq1  TAGGTCTTTTTGTTATTCCAGATGAATTTGCAAATTGCCCTTTCTAATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCTTTTTGTTATTCCAGATGAATTTGCAAATTGCCCTTTCTAATTC  100

seq1  GATGAAGAATTTAGTTGGAATTTTGATGGGGATTGCATTGTATCTATAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAGAATTTAGTTGGAATTTTGATGGGGATTGCATTGTATCTATAGA  150

seq1  TTGCTTTTGGTAAGATAGCCATTTTTACTATATTGATCCTTCCAATCTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTTGGTAAGATAGCCATTTTTACTATATTGATCCTTCCAATCTAT  200

seq1  GAGCATGGGAGATCTTTCCATCTTCTGAAATCCTCTTTGATTTCTTTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATGGGAGATCTTTCCATCTTCTGAAATCCTCTTTGATTTCTTTCTT  250

seq1  CAGAGAATTCAAGTTCTTATCATACATATCTTTCATTTTCTTAGTTAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAATTCAAGTTCTTATCATACATATCTTTCATTTTCTTAGTTAGAA  300

seq1  TCACACCAAGGTATTTCATATTATTTGTGACTATTGTGAAGGGTGTTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACCAAGGTATTTCATATTATTTGTGACTATTGTGAAGGGTGTTGTT  350

seq1  TCCCTAATTTCTTTCTCATCTGGTTTATCCTTTGTGTAGAGTATAAGGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTAATTTCTTTCTCATCTGGTTTATCCTTTGTGTAGAGTATAAGGCC  400

seq1  TTGGCTTCACTCAATATACTGTGACCAAGGTACATAAGTAAATAAACAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTTCACTCAATATACTGTGACCAAGGTACATAAGTAAATAAACAGT  450

seq1  TTTCTCACATGTTTCTTTGGCTATGGTGGTTTTTACAGCAACAGAATCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCACATGTTTCTTTGGCTATGGTGGTTTTTACAGCAACAGAATCTA  500

seq1  AGACATCACCTAAATGGTAAATTGCCACTGTTGGGATTTTGAATATCATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATCACCTAAATGGTAAATTGCCACTGTTGGGATTTTGAATATCATA  550

seq1  GATTCCTGATGCAATAAAAGGCACTGATTTGAAAAGAGAAAGAAGAATGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCTGATGCAATAAAAGGCACTGATTTGAAAAGAGAAAGAAGAATGC  600

seq1  ATGTTAGCAGAGTGAGAAGCACCGTGACAGTAATGCATGTGATAGCACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAGCAGAGTGAGAAGCACCGTGACAGTAATGCATGTGATAGCACAG  650

seq1  AAGCGCTGCACTTTGGGATAGCTTTACAATGTACTAGGGAGATGCTAAGA  700
      ||||||||||||||||||||||||||| |||||||| ||||||||||   
seq2  AAGCGCTGCACTTTGGGATAGCTTTAC-ATGTACTA-GGAGATGCTA--G  696

seq1  ATACCAGATAACATACAAAGACGGGAACATTCTATGAAAAGAACATT-GA  749
      |||||||||||||||||||||| |||||||||||||||||||||||| ||
seq2  ATACCAGATAACATACAAAGAC-GGAACATTCTATGAAAAGAACATTGGA  745

seq1  GATTCAGATTGTGCCTGCAAAATAAGGCTTTGTAAATGTATGTGAAAAGA  799
      ||||||||||||| ||||  ||||| ||||||| |||||||||||| | |
seq2  GATTCAGATTGTG-CTGC--AATAA-GCTTTGT-AATGTATGTGAAGA-A  789

seq1  CAGTTTCCTTATGAAATGACT-GTGTTTCATTAAGTGAGAAAAATCACTA  848
      ||| ||||||||||||||||| |||||||||  ||||||  |||||||||
seq2  CAG-TTCCTTATGAAATGACTGGTGTTTCAT--AGTGAG--AAATCACTA  834

seq1  ATGGAAATATCTCCCACAAGAACTTCACAGTGAGGTCAGTGAATTCTATG  898
         ||||| |||||||     ||||| |||||||||||||||  | | ||
seq2  --TGAAAT-TCTCCCA----GACTTC-CAGTGAGGTCAGTGATCTATTTG  876

seq1  GACATATAAAT-CACTCTAGA  918
       |||||||| | | |||||||
seq2  CACATATAACTACCCTCTAGA  897