BAC Information

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BAC

Clone NameB6Ng01-326C20
Chromosome13 (Build37)
Map Location 65,588,171 - 65,589,375
singlet/doubletsinglet
Overlap geneLOC665777
Upstream gene1190003K10Rik, LOC218298, Ppia-ps13_866.1, LOC238678, LOC631470, Cntnap3, EG432767, 4930458L03Rik, LOC218301, LOC628515, 4932441B19Rik, Gm274, Hiatl1, LOC100042311, Olfr465-ps1, Olfr466, Nlrp4f, ENSMUSG00000074847, Zfp369, LOC100042347, LOC100042341, LOC665738, EG665742, LOC665750, LOC665753, EG544944, EG665767
Downstream geneEG628648, LOC665809, LOC100042404, LOC628722, LOC665851, Vmn2r-ps99, LOC628794, EG665897, LOC100041855, EG628746, LOC100042434, LOC100041892, EG665974, LOC100041915, 2410141K09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-326C20.bB6Ng01-326C20.g
ACCGA114050GA114051
length1,1781,167
definitionB6Ng01-326C20.b B6Ng01-326C20.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctctaatgaatcataagatcatatttgtgagtgaagcatttgtca
catttactacatttgtaaggcttctttcttgtatgaattatctgatgact
actaggactgtgtttgttgttacagcatttgtcacactcactacatttat
aaggtttctctccagtatgaattctctgatgaatattaagactgtatttg
tgaaaaaagcatttgtcacattcactacatctgtaaggtttctctcctgt
atggattctctgatgttgtctaagcttgcatttcttggtgaaacatctgg
cacgttcactacatttgtaaggtttctttccactattggtttgtttcagc
ctgagtatttgtgtagagttaaaaactttatcaagcactataccattgtg
ctctttctttcctatgtggattccttgatgtagaccagtgatagaacaca
aatttaaacagtttatacagtttttatgtttgcaaggtcctctggtgttt
ccattttgatgactgtttatgtttgatgactcaacacgtgtattcctgaa
gttagcttggtaaagtacactttgggtgtattcaggaataatttttgcca
tgctttgacctttgtaagacttctcctgtatattcacacactgggatgtg
ttggaccttttaatcattatgcatttatttgtttttaatgaggctttact
ggataaaaatatcttttaaatcatcttcatgttcatgtccatatgaaaat
tcaaatatgtatttatcatatttaaaagaatagatatgttattcttatat
aagtgaggacaatgtccactatgaataacatctcctggtctagttgtggt
aaactctttaaaagtaattcagccggtggtggtggcacactcctttaatc
ccagcacttgggaggcagatgcagcagatttctgagttcacggccagcca
ggctacacagagaaatcctgtctcaaaaaaattaaaaaaagattactcag
accttaagatagagacatgtttgtatactagaattggataggtcatgaca
taacattgtgaccagatttgtatgatcacatccttaataaatagacgtta
atatttaaattatattcctccatgttaactatttccaagaagactaccca
ttatcatctaattcactgattaatttta
gaattccagagaaggacaaagacatagtttttaaaagcatgtactccact
acattggaaattctaaaagatggataatttactccataggttccacttat
caaattaaatcaaactaagacaagcaacttaagcagacttaaacaaaacc
tagaaaaagagaagtcattacaaatctgccaccaaaaagacctcagggcc
atgagttttggggtagaatcccagcagactttcaaggaggaggtaacaaa
gatactcctcaaagtattcaataatattgaaagagaagaaatgttggtcg
atttattttgtgaacctttggttactcaaatatccagtcaataaagactc
agcaacaaaagagaatttcagaccaactttccttaaagtgactgacacaa
aaacactttataaagcaaaacaaataaaaaagaaagaaaatagaaaaaaa
tcaaaagatcatccaccatgatcaatgatgtatgcttcattaaatagatg
cagggatggttcaacataatgtgtgttggaactattaagacaactcttga
tctctgaattgggcctctcccccccccccagaagaaaagggggacgccac
caagttcctgcttcccggtgtagctgccaaaagaaagaatttctattgcc
cccctcccactaataagtacttctccttttgcttgtattgccccacccct
tctgctgataagtatctatacttccccttttgcttgtgcatttaagcctt
gggcctttcccaatacattggggtcttgatgcaatccagaacggtttccg
tgtccttattcgcacaagaccctcatctctctctacacccccatttggtt
attaggaaaaggtccccttaagacactcgaataactggacttgctggcgg
gtcaaatgtgcttaaagtgtaaaaaaaaaaaaaaagcagtgatcatctca
ctagatggtgaatattctctgacatgtccaacatcactttatgataaaat
tcttgaagtgattagatacagggacatacctaaacataatatgtacctta
caagcaagctagagcaacatttaataaatggaagaacatcaagtatccca
ctaattcctgaccaggatacgtgtcattctccgatttctattcagatatt
tatcctaaaaggttcgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_65588171_65589375
seq2: B6Ng01-326C20.b_49_1226 (reverse)

seq1  TAAATTTAATCAGTGAATATAAAATGATAATATGGGCGTAAATCTTTCTT  50
      |||| |||||||||||  || | ||||||  |||||    | || |||||
seq2  TAAAATTAATCAGTGA--ATTAGATGATA--ATGGG---TAGTC-TTCTT  42

seq1  TGGAATAGGTAACAT-GAGGATATAT-ATTTAAATATTAACGTCTA-TTA  97
       | ||||| |||||| ||||| |||| ||||||||||||||||||| |||
seq2  GGAAATAGTTAACATGGAGGA-ATATAATTTAAATATTAACGTCTATTTA  91

seq1  TTAAGGATGTGATCATACAAATCTGGTCACAATGTTATGTCATTGAACCC  147
      |||||||||||||||||||||||||||||||||||||||||| |||  ||
seq2  TTAAGGATGTGATCATACAAATCTGGTCACAATGTTATGTCA-TGA--CC  138

seq1  TATCCCAATTCTAGTATAC-AACATGGTCTCTATCCCTTAAGGTTCTGAG  196
      ||| ||||||||||||||| ||||| ||||||||  ||||||| ||||||
seq2  TAT-CCAATTCTAGTATACAAACAT-GTCTCTAT--CTTAAGG-TCTGAG  183

seq1  TTAATCTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACAGGGTTTCTCTGT  246
       |||||          |||||||  ||||||||||||||| |||||||||
seq2  -TAATC----------TTTTTTTAATTTTTTTGAGACAGGATTTCTCTGT  222

seq1  GTAGCCCTGGCTGGCCGTGAACTCAGAAATCTGCCTGCATCTGCCTCCCA  296
      |||| |||||||||||||||||||||||||||| ||||||||||||||||
seq2  GTAG-CCTGGCTGGCCGTGAACTCAGAAATCTG-CTGCATCTGCCTCCCA  270

seq1  AGTGCTGGGATTAAAGGAGTGTGCCACCACCACCGGCCTGAATTACTTTT  346
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AGTGCTGGGATTAAAGGAGTGTGCCACCACCACCGG-CTGAATTACTTTT  319

seq1  AAAGAGTTTACCACAACTAGACCAGGAGATGTTATTCATAGTGGACATTG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGTTTACCACAACTAGACCAGGAGATGTTATTCATAGTGGACATTG  369

seq1  TCCTCACTTATATAAGAATAACATATCTATTCTTTTAAATATGATAAATA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCACTTATATAAGAATAACATATCTATTCTTTTAAATATGATAAATA  419

seq1  CATATTTGAATTTTCATATGGACATGAACATGAAGATGATTTAAAAGATA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTGAATTTTCATATGGACATGAACATGAAGATGATTTAAAAGATA  469

seq1  TTTTTATCCAGTAAAGCCTCATTAAAAACAAATAAATGCATAATGATTAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATCCAGTAAAGCCTCATTAAAAACAAATAAATGCATAATGATTAA  519

seq1  AAGGTCCAACACATCCCAGTGTGTGAATATACAGGAGAAGTCTTACAAAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCCAACACATCCCAGTGTGTGAATATACAGGAGAAGTCTTACAAAG  569

seq1  GTCAAAGCATGGCAAAAATTATTCCTGAATACACCCAAAGTGTACTTTAC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAGCATGGCAAAAATTATTCCTGAATACACCCAAAGTGTACTTTAC  619

seq1  CAAGCTAACTTCAGGAATACACGTGTTGAGTCATCAAACATAAACAGTCA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTAACTTCAGGAATACACGTGTTGAGTCATCAAACATAAACAGTCA  669

seq1  TCAAAATGGAAACACCAGAGGACCTTGCAAACATAAAAACTGTATAAACT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAATGGAAACACCAGAGGACCTTGCAAACATAAAAACTGTATAAACT  719

seq1  GTTTAAATTTGTGTTCTATCACTGGTCTACATCAAGGAATCCACATAGGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAATTTGTGTTCTATCACTGGTCTACATCAAGGAATCCACATAGGA  769

seq1  AAGAAAGAGCACAATGGTATAGTGCTTGATAAAGTTTTTAACTCTACACA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAGCACAATGGTATAGTGCTTGATAAAGTTTTTAACTCTACACA  819

seq1  AATACTCAGGCTGAAACAAACCAATAGTGGAAAGAAACCTTACAAATGTA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTCAGGCTGAAACAAACCAATAGTGGAAAGAAACCTTACAAATGTA  869

seq1  GTGAACGTGCCAGATGTTTCACCAAGAAATGCAAGCTTAGACAACATCAG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACGTGCCAGATGTTTCACCAAGAAATGCAAGCTTAGACAACATCAG  919

seq1  AGAATCCATACAGGAGAGAAACCTTACAGATGTAGTGAATGTGACAAATG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCCATACAGGAGAGAAACCTTACAGATGTAGTGAATGTGACAAATG  969

seq1  CTTTTTTCACAAATACAGTCTTAATATTCATCAGAGAATTCATACTGGAG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTCACAAATACAGTCTTAATATTCATCAGAGAATTCATACTGGAG  1019

seq1  AGAAACCTTATAAATGTAGTGAGTGTGACAAATGCTGTAACAACAAACAC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCTTATAAATGTAGTGAGTGTGACAAATGCTGTAACAACAAACAC  1069

seq1  AGTCCTAGTAGTCATCAGATAATTCATACAAGAAAGAAGCCTTACAAATG  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTAGTAGTCATCAGATAATTCATACAAGAAAGAAGCCTTACAAATG  1119

seq1  TAGTAAATGTGACAAATGCTTCACTCACAAATATGATCTTATGATTCATT  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAATGTGACAAATGCTTCACTCACAAATATGATCTTATGATTCATT  1169

seq1  AGAGAATTC  1205
      |||||||||
seq2  AGAGAATTC  1178