BAC Information

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BAC

Clone NameB6Ng01-327G15
Chromosome13 (Build37)
Map Location 111,437,129 - 111,438,280
singlet/doubletsinglet
Overlap genenone
Upstream genePde4d, LOC100040577, Rab3c, EG432803, 9830130M13Rik, Plk2
Downstream geneLOC100040614, LOC668159, 4732495G21Rik, LOC100040640, EG621953, Gpbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-327G15.bB6Ng01-327G15.g
ACCGA114969GA114970
length1,1471,167
definitionB6Ng01-327G15.b B6Ng01-327G15.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttcactttgagaacttgaattgtcatctttttgttttgttttg
ttttgttttgttttgttttggtttgttgagccacaaacctaccagacaag
caggacttttagaccacactctctctctttaagaattttctcattcttca
ttcctagtcttctaatcagctttggtgcagggggcagccctttcaaatta
cagcgctccctgttgttggggataagacagaacccatgcatcactgtggt
aattttgagtttcctaaagtattaacaggaagacgcagcctttgacctgc
agagatgagtatcgttctgatctctttgacttgttcttacctgttacaac
ccatttcctaatcttttctattaattgtaacttcttagcaatccatggta
agtctaggcaaaggcttgagcttttggactgacaagtcatttctaccttt
agctgtaaaagggagggaccatcaggagtggaagggagaagtctgagaaa
aaaaagtgtggtcaataaaattccctggtttgtatgctgacaggcagtgg
aacatgattgcgagaggatagactctgaatccaggccatagcaactgact
tagcctacaaacagagtcgcctccagtatatttttgagtctctgtccaat
tctctatctttataatgtggatgatgctaatagtatcatgagaggcttat
atctatcatatattgtttttagacttaaaacacactatctggcacaaata
aattcaatgcctcaattaatcgcaactagtatttctatgatcaaaagtca
tgttgttcatttattcttaataaggaaaaccttttaatcatgagccagat
ttgtcctatttctttctacaatttacaaattagtgtataagtgaaatatg
atgggttctcagactcaagaaggatttatttaagcttcaggaactgggcc
aagggctctcagttgaaagcccatggcgactgcattagaaaatgccttat
tttctcttcacagaaagagcagagaacatcttgtattttctcatggggga
gagcagtaaatgaagcattcttgaaaactagaaaaatactcataggtacc
tttaacaattatattgcatattagaaattaatttgcaagccaatagc
gaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatc
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaacaggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtattcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgctaaacacatgaaactcaag
gagaatgaagactgaagtgtggacactatgcccctccttagatttgggaa
caaaacacccatggaaggagttacagagacggagtttggagctgagatga
aaggatggaccatgtagagactgccatagccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttattgaaa
ggacgcagatgtagctgtctcttgtgagactatgccggggcccagcaaac
acagaagtggatgctcacagtcagctaatggatggatcataggctcccaa
tggaggagctagagaaagtagccaaggagctaaagggatctgcaacctat
agtgacacatatgagctaaccagttaccccggagctctgactctagctgc
ataatatatcaaagatgacctagtcgtcatcactggaaagagagccaatg
actgcaaactttatatgccagttacaggtaatacatgctaaatggggaat
gggttgggccagcggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_111437129_111438280
seq2: B6Ng01-327G15.b_48_1194

seq1  GAATTCTTTCACTTTGAGAACTTGAATTGTCATCTTTTTGTTTTGTTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCACTTTGAGAACTTGAATTGTCATCTTTTTGTTTTGTTTTG  50

seq1  TTTTGTTTTGTTTTGTTTTGGTTTGTTGAGCCACAAACCTACCAGACAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTGTTTTGTTTTGGTTTGTTGAGCCACAAACCTACCAGACAAG  100

seq1  CAGGACTTTTAGACCACACTCTCTCTCTTTAAGAATTTTCTCATTCTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACTTTTAGACCACACTCTCTCTCTTTAAGAATTTTCTCATTCTTCA  150

seq1  TTCCTAGTCTTCTAATCAGCTTTGGTGCAGGGGGCAGCCCTTTCAAATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAGTCTTCTAATCAGCTTTGGTGCAGGGGGCAGCCCTTTCAAATTA  200

seq1  CAGCGCTCCCTGTTGTTGGGGATAAGACAGAACCCATGCATCACTGTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGCTCCCTGTTGTTGGGGATAAGACAGAACCCATGCATCACTGTGGT  250

seq1  AATTTTGAGTTTCCTAAAGTATTAACAGGAAGACGCAGCCTTTGACCTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGAGTTTCCTAAAGTATTAACAGGAAGACGCAGCCTTTGACCTGC  300

seq1  AGAGATGAGTATCGTTCTGATCTCTTTGACTTGTTCTTACCTGTTACAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGAGTATCGTTCTGATCTCTTTGACTTGTTCTTACCTGTTACAAC  350

seq1  CCATTTCCTAATCTTTTCTATTAATTGTAACTTCTTAGCAATCCATGGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTCCTAATCTTTTCTATTAATTGTAACTTCTTAGCAATCCATGGTA  400

seq1  AGTCTAGGCAAAGGCTTGAGCTTTTGGACTGACAAGTCATTTCTACCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAGGCAAAGGCTTGAGCTTTTGGACTGACAAGTCATTTCTACCTTT  450

seq1  AGCTGTAAAAGGGAGGGACCATCAGGAGTGGAAGGGAGAAGTCTGAGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTAAAAGGGAGGGACCATCAGGAGTGGAAGGGAGAAGTCTGAGAAA  500

seq1  AAAAAGTGTGGTCAATAAAATTCCCTGGTTTGTATGCTGACAGGCAGTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTGTGGTCAATAAAATTCCCTGGTTTGTATGCTGACAGGCAGTGG  550

seq1  AACATGATTGCGAGAGGATAGACTCTGAATCCAGGCCATAGCAACTGACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGATTGCGAGAGGATAGACTCTGAATCCAGGCCATAGCAACTGACT  600

seq1  TAGCCTACAAACAGAGTCGCCTCCAGTATATTTTTGAGTCTCTGTCCAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTACAAACAGAGTCGCCTCCAGTATATTTTTGAGTCTCTGTCCAAT  650

seq1  TCTCTATCTTTATAATGTGGATGATGCTAATAGTATCATGAGAGGCTTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTATCTTTATAATGTGGATGATGCTAATAGTATCATGAGAGGCTTAT  700

seq1  ATCTATCATATATTGTTTTTAGACTTAAAACACACTATCTGGCACAAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATCATATATTGTTTTTAGACTTAAAACACACTATCTGGCACAAATA  750

seq1  AATTCAATGCCTCAATTAATCGCAACTAGTATTTCTATGATCAAAAGTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAATGCCTCAATTAATCGCAACTAGTATTTCTATGATCAAAAGTCA  800

seq1  TGTTGTTCATTTATTCTTAATAAGGAAAACCTTTTAATCATGAGCCAGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTCATTTATTCTTAATAAGGAAAACCTTTTAATCATGAGCCAGAT  850

seq1  TTGTCCTATTTCTTTCTACAATTTACAAATTAGTGTATAAGTGAAATATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCTATTTCTTTCTACAATTTACAAATTAGTGTATAAGTGAAATATG  900

seq1  ATGGGTTCTCAGACTCAAGAAGGATTTATTTAAGCTTCAGGAACT-GGCC  949
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ATGGGTTCTCAGACTCAAGAAGGATTTATTTAAGCTTCAGGAACTGGGCC  950

seq1  AAGGGCTCTCAGTTGAAAGCCCATGGCGACTGCATTAGAAAATGCCTTAA  999
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AAGGGCTCTCAGTTGAAAGCCCATGGCGACTGCATTAGAAAATGCCTT-A  999

seq1  TTTTCTCTTCACAGAAAGAGCAGAGAACATTCTTGTTATTTCTCATGGGG  1049
      ||||||||||||||||||||||||||||| ||||||  ||||||||||||
seq2  TTTTCTCTTCACAGAAAGAGCAGAGAACA-TCTTGTATTTTCTCATGGGG  1048

seq1  AGAG-GCAGTAAAATGAAAGCAATTCTTTGAAAACTAAGAAAATACTCCA  1098
       ||| ||||| ||||| |||| |||| ||||||||||  |||||||| ||
seq2  -GAGAGCAGT-AAATG-AAGC-ATTC-TTGAAAACTAGAAAAATACT-CA  1092

seq1  TA-GTACCTTT-ACAATTATA-TGCATATTTAGAAATTTATTTGAAGGGA  1145
      || |||||||| ||||||||| |||||| ||||||||| ||||| |  | 
seq2  TAGGTACCTTTAACAATTATATTGCATA-TTAGAAATTAATTTGCA-AGC  1140

seq1  CAATAGC  1152
      |||||||
seq2  CAATAGC  1147