BAC Information

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BAC

Clone NameB6Ng01-327N03
Chromosome13 (Build37)
Map Location 110,405,981 - 110,564,928
singlet/doubletdoublet
Overlap genePde4d
Upstream geneEG668144, LOC621663, LOC100040968
Downstream geneLOC100040577, Rab3c, EG432803, 9830130M13Rik, Plk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-327N03.bB6Ng01-327N03.g
ACCGA115251GA115252
length9961,094
definitionB6Ng01-327N03.b B6Ng01-327N03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,563,945 - 110,564,928)(110,405,981 - 110,407,078)
sequence
gaattcattttagtagggaggaatttctactattattcttttgatgacaa
tcaagacccaaagtggtggactgtacacataataagccaggaccttgtga
catcatcataagcagatgagacagagagaaccaatagcttaatagttatt
aaaatgtgacccccccacacacacttgatggaattctcaaggaagaaaac
atccgtttttttcagaatcatctgcaatgtggtgaccacagatagagcca
gccagcacattggtcaatacatgctcatttttccataaagtatattcact
gaaaatcatgtaagggcctcctcttcctcttcctcctcctcgtcctcctc
ctcctcgtcctcctcctccccctcttccttctcatccttcctcctcctcc
tccttcctcctccttcctcctcttcctcctcttcctcctcctcctccccc
cctttcctcagattatggacaggggtttaaagaagatacttgaaccaaaa
aattggtctaacttggagaatgtgctaattttcttctggtagtaatttta
gaaatcataggttttctttccaggcaattattttaatgaatcaattgagg
tttcaagaaacaattaaatgagctcaatttggtcgcaagttcagcaaaat
gagatcatcctctggcttgggttcagttgaggtcaactctcctatcgaac
acggactaataggatagggatcgttttctttttatgttctttacttccgc
tgtattttcgccccaatatctgtgggaacttttcctgtgtgtgtgtgagt
gttagtataagcatgcatgttgagtgtgtagatatatatgcattgtgaca
tcagacatcaattgtctggtatctctgtaactattcttccatcttgatag
ctttagatacggtctcccttcactgggacccttgggcttccttgacttga
tctaggctggccaggccagtaagcccttaattagcacccttatttt
gaattctctggcccaagcaagggtcacctgatgcaaatccagatagtaaa
agattttgcactgtcagccagtaagtcaatattcaactctgtcctgaaga
aaaaatgcagttgtccacatatgaccctttagagggctgtggcacatgtg
ccaataaggctttgttcattaaaaatgaaggcggcaggcgcggcaagatt
tgctcagtggtaggtggtattgcaacttgactgttcttgtgaaacgaggg
atttttaaattgcagaatgaaaagcaaggtagtcccatctgaactctgag
ttaaccttctccgaagtgtttgtgaattcaaacactagagggcacaaaag
gatatgtttaagtcaaggacttctcttcaacagaacgttacaattaggaa
aacctgcctcaagtaaagccttgtgcccccatgggcatgatttttctgaa
atgctgacctgcagctctctagtcctcacagagcacaagaaacggcagcg
gctgacttctgggtctctttaataacaacctcctggctggctttctttcc
ttcacttttatcgctctcagccttttataaaatatggtccacataactac
tcatggtgggatttttttcattttcctatcgtataagaaatcactgtctt
gttattctcagtactgactaattatcatggagtgaactccctgtaacaca
cagcaagttatgtcaaatgatcttacatttgcaaaattttttaaagtatg
aatcatgcatacaaatgtagtttgctacattaatttttaagctaactcaa
ggtattcttcttaggaaaataaataaaaatcattacatacctcggctcta
aaattaagcctatttttttattattatttctgctttaaagggtttgaatt
ttagagatctttttgagactttaaaaatataagtgttcaaagataaccat
cccaaaattagttgtactatggatgtcatgcaacataaatataccatatg
aactatgttagataattttggtattgtatcaaggcatcactactatttta
ttttccacaatgttagatatatgaggaatgcttcttgtaaaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_110563945_110564928
seq2: B6Ng01-327N03.b_44_1039 (reverse)

seq1  AAAAT-AGGGTGCTA--TTAGGGCTTACTGGCCT-GCCAGCCTAGCTC-A  45
      ||||| |||||||||  | ||||||||||||||| |||||||||| || |
seq2  AAAATAAGGGTGCTAATTAAGGGCTTACTGGCCTGGCCAGCCTAGATCAA  50

seq1  GTC-AGGAAGCCC-AGGGTCCCAGTG-AGGGAGACCGTATCTAAAGCTAT  92
      ||| ||||||||| |||||||||||| |||||||||||||||||||||||
seq2  GTCAAGGAAGCCCAAGGGTCCCAGTGAAGGGAGACCGTATCTAAAGCTAT  100

seq1  C-AGATGG-AGAATAGTTAACAGAGATACCAGAC-ATTGATGTCTGGTGT  139
      | |||||| ||||||||| ||||||||||||||| ||||||||||| |||
seq2  CAAGATGGAAGAATAGTT-ACAGAGATACCAGACAATTGATGTCTGATGT  149

seq1  CAC-ATGCATATATATCTACACACTC-ACATGCATGCTTATACTAACACT  187
      ||| |||||||||||||||||||||| |||||||||||||||||||||||
seq2  CACAATGCATATATATCTACACACTCAACATGCATGCTTATACTAACACT  199

seq1  CACACACACACAGGAAAAGTTCCCACAGATATTGGGGCGAAAATACAGCG  237
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACAGGAAAAGTTCCCACAGATATTGGGGCGAAAATACAGCG  249

seq1  GAAGTAAAGAACATAAAAAGAAAACGATCCCTATCCTATTAGTCCGTGTT  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAAAGAACATAAAAAGAAAACGATCCCTATCCTATTAGTCCGTGTT  299

seq1  CGATAGGAGAGTTGACCTCAACTGAACCCAAGCCAGAGGATGATCTCATT  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATAGGAGAGTTGACCTCAACTGAACCCAAGCCAGAGGATGATCTCATT  349

seq1  TTGCTGAACTTGCGACCAAATTGAGCTCATTTAATTGTTTCTTGAAACCT  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGAACTTGCGACCAAATTGAGCTCATTTAATTGTTTCTTGAAACCT  399

seq1  CAATTGATTCATTAAAATAATTGCCTGGAAAGAAAACCTATGATTTCTAA  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGATTCATTAAAATAATTGCCTGGAAAGAAAACCTATGATTTCTAA  449

seq1  AATTACTACCAGAAGAAAATTAGCACATTCTCCAAGTTAGACCAATTTTT  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACTACCAGAAGAAAATTAGCACATTCTCCAAGTTAGACCAATTTTT  499

seq1  TGGTTCAAGTATCTTCTTTAAACCCCTGTCCATAATCTGAGGAAAGGGGG  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCAAGTATCTTCTTTAAACCCCTGTCCATAATCTGAGGAAAGGGGG  549

seq1  GGAGGAGGAGGAGGAAGAGGAGGAAGAGGAGGAAGGAGGAGGAAGGAGGA  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGGAGGAGGAAGAGGAGGAAGAGGAGGAAGGAGGAGGAAGGAGGA  599

seq1  GGAGGAGGAAGGATGAGAAGGAAGAGGGGGAGGAGGAGGACGAGGAGGAG  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGGAAGGATGAGAAGGAAGAGGGGGAGGAGGAGGACGAGGAGGAG  649

seq1  GAGGACGAGGAGGAGGAAGAGGAAGAGGAGGCCCTTACATGATTTTCAGT  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACGAGGAGGAGGAAGAGGAAGAGGAGGCCCTTACATGATTTTCAGT  699

seq1  GAATATACTTTATGGAAAAATGAGCATGTATTGACCAATGTGCTGGCTGG  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATACTTTATGGAAAAATGAGCATGTATTGACCAATGTGCTGGCTGG  749

seq1  CTCTATCTGTGGTCACCACATTGCAGATGATTCTGAAAAAAACGGATGTT  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATCTGTGGTCACCACATTGCAGATGATTCTGAAAAAAACGGATGTT  799

seq1  TTCTTCCTTGAGAATTCCATCAAGTGTGTGTGGGGGGGTCACATTTTAAT  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCTTGAGAATTCCATCAAGTGTGTGTGGGGGGGTCACATTTTAAT  849

seq1  AACTATTAAGCTATTGGTTCTCTCTGTCTCATCTGCTTATGATGATGTCA  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATTAAGCTATTGGTTCTCTCTGTCTCATCTGCTTATGATGATGTCA  899

seq1  CAAGGTCCTGGCTTATTATGTGTACAGTCCACCACTTTGGGTCTTGATTG  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTCCTGGCTTATTATGTGTACAGTCCACCACTTTGGGTCTTGATTG  949

seq1  TCATCAAAAGAATAATAGTAGAAATTCCTCCCTACTAAAATGAATTC  984
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAAAAGAATAATAGTAGAAATTCCTCCCTACTAAAATGAATTC  996

seq1: chr13_110405981_110407078
seq2: B6Ng01-327N03.g_66_1159

seq1  GAATTCTCTGGCCCAAGCAAGGGTCACCTGATGCAAATCCAGATAGTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGGCCCAAGCAAGGGTCACCTGATGCAAATCCAGATAGTAAA  50

seq1  AGATTTTGCACTGTCAGCCAGTAAGTCAATATTCAACTCTGTCCTGAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTGCACTGTCAGCCAGTAAGTCAATATTCAACTCTGTCCTGAAGA  100

seq1  AAAAATGCAGTTGTCCACATATGACCCTTTAGAGGGCTGTGGCACATGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGCAGTTGTCCACATATGACCCTTTAGAGGGCTGTGGCACATGTG  150

seq1  CCAATAAGGCTTTGTTCATTAAAAATGAAGGCGGCAGGCGCGGCAAGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATAAGGCTTTGTTCATTAAAAATGAAGGCGGCAGGCGCGGCAAGATT  200

seq1  TGCTCAGTGGTAGGTGGTATTGCAACTTGACTGTTCTTGTGAAACGAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAGTGGTAGGTGGTATTGCAACTTGACTGTTCTTGTGAAACGAGGG  250

seq1  ATTTTTAAATTGCAGAATGAAAAGCAAGGTAGTCCCATCTGAACTCTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAAATTGCAGAATGAAAAGCAAGGTAGTCCCATCTGAACTCTGAG  300

seq1  TTAACCTTCTCCGAAGTGTTTGTGAATTCAAACACTAGAGGGCACAAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCTTCTCCGAAGTGTTTGTGAATTCAAACACTAGAGGGCACAAAAG  350

seq1  GATATGTTTAAGTCAAGGACTTCTCTTCAACAGAACGTTACAATTAGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGTTTAAGTCAAGGACTTCTCTTCAACAGAACGTTACAATTAGGAA  400

seq1  AACCTGCCTCAAGTAAAGCCTTGTGCCCCCATGGGCATGATTTTTCTGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGCCTCAAGTAAAGCCTTGTGCCCCCATGGGCATGATTTTTCTGAA  450

seq1  ATGCTGACCTGCAGCTCTCTAGTCCTCACAGAGCACAAGAAACGGCAGCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGACCTGCAGCTCTCTAGTCCTCACAGAGCACAAGAAACGGCAGCG  500

seq1  GCTGACTTCTGGGTCTCTTTAATAACAACCTCCTGGCTGGCTTTCTTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACTTCTGGGTCTCTTTAATAACAACCTCCTGGCTGGCTTTCTTTCC  550

seq1  TTCACTTTTATCGCTCTCAGCCTTTTATAAAATATGGTCCACATAACTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTTTTATCGCTCTCAGCCTTTTATAAAATATGGTCCACATAACTAC  600

seq1  TCATGGTGGGATTTTTTTCATTTTCCTATCGTATAAGAAATCACTGTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGTGGGATTTTTTTCATTTTCCTATCGTATAAGAAATCACTGTCTT  650

seq1  GTTATTCTCAGTACTGACTAATTATCATGGAGTGAACTCCCTGTAACACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTCTCAGTACTGACTAATTATCATGGAGTGAACTCCCTGTAACACA  700

seq1  CAGCAAGTTATGTCAAATGATCTTACATTTGCAAAATTTTTTAAAGTATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAGTTATGTCAAATGATCTTACATTTGCAAAATTTTTTAAAGTATG  750

seq1  AATCATGCATACAAATGTAGTTTGCTACATTAATTTTTAAGCTAACTCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATGCATACAAATGTAGTTTGCTACATTAATTTTTAAGCTAACTCAA  800

seq1  GGTATTCTTCTTAGGAAAATAAATAAAAATCATTACATACCTCAGGCTCT  850
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GGTATTCTTCTTAGGAAAATAAATAAAAATCATTACATACCTC-GGCTCT  849

seq1  AAAATTAAGCCTATTTTTTTATTATTATTTCTGCTTTAAAGGGTTTGAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTAAGCCTATTTTTTTATTATTATTTCTGCTTTAAAGGGTTTGAAT  899

seq1  TTTAGAGATC-TTTTGAGACTTTAAAAATATAAGTGTTCAAAGATAACCA  949
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAGATCTTTTTGAGACTTTAAAAATATAAGTGTTCAAAGATAACCA  949

seq1  T-CCAAAATTAGTTGTACTATGGATGTCATGGAACATAAATATACCATAT  998
      | ||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TCCCAAAATTAGTTGTACTATGGATGTCATGCAACATAAATATACCATAT  999

seq1  GAACTAATGTTTAGATAAATTTTGGTATTGTATCAAGGCATCAACTACTA  1048
      ||||| ||| |||||| ||||||||||||||||||||||||| |||||| 
seq2  GAACT-ATG-TTAGAT-AATTTTGGTATTGTATCAAGGCATC-ACTACT-  1044

seq1  ATTTTATTTT-CAC-ATGTTAGATAATATGAGGAAATGCTTCTTGTAAAA  1096
      |||||||||| ||| ||||||||| |||||||| ||||||||||||||||
seq2  ATTTTATTTTCCACAATGTTAGAT-ATATGAGG-AATGCTTCTTGTAAAA  1092

seq1  TA  1098
      ||
seq2  TA  1094