BAC Information

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BAC

Clone NameB6Ng01-328A01
Chromosome13 (Build37)6 (Build37)
Map Location 77,341,691 - 77,342,22196,583,455 - 96,583,669
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneGm276, Mctp1, LOC666603, EG666607, Ankrd32, 2210408I21Rik, LOC631139
Downstream geneLOC675063, D13Mgi7, 1110033M05Rik, 1700013G10Rik, Nr2f1, EG666856
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-328A01.bB6Ng01-328A01.g
ACCGA115381GA115382
length1,063863
definitionB6Ng01-328A01.b B6Ng01-328A01.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(77,341,691 - 77,342,221)(96,583,455 - 96,583,669)
sequence
gaattcctgatctttccaagacttttatcatgaatgggtgttggattttg
tcaaatgctttctcagcatctaatgagatgatcatgtggtttttgtcttt
gaacttgtttatatagtgaattatgttgatggatttccgtatattaaacc
atccttacatctctgggatgaagcccactacatcatgatgaatgatcgtt
ttaatgtgttcttggattcgggtttgcgaggattttattgaatatttttg
cattgatattcataagggaaattggtctgaagttctcttccttttttgga
tctttgtgtggtttagataccacagtaattgtggcttcatagaatgagtt
gggtagagtaaatttgcttccctttgttctagagcttttagttgtgctgt
caagctgctagtgtatgctctctccagtttatttttggaggcactcagag
ctatgagttttcctctcaggattgctttcattgtgtcccataagttttgg
tatgttgtgacttcattttcattaaactctaaagtatttaaattctttct
ttctttctctcttttctttgttttctttctttccttccttcctttcttcc
ttctttccttccttcaccaagttattattgagtagagtgttgttcagctt
ccacgtgcgtgtgagctttctattatttatattgttattgaagatcagct
tcctgttattttgttgttacatttggcattctgttcttgtgactatcttg
ttttaggtttgttgaaggatttctttgttggtctatctagtgtgtcattt
ccctccttgtgttggagttttccctttattatcctttgaagggctggatt
tgtggaaagataaagtgtaaatttatttttgtcatggaatactttgtttt
ctccacctatggtaattgagggttttgctgggtttagtagcctggggctg
gcatttgtgttctttagggtctgtattacatctgtccagatcctcttgtc
ttcatagtctctgggtgaagaggtaatatatttacagaaagtattgaatg
aagtacgaagagt

gaattcacagagacagtggtaacaagcacagggtctgcacaattctaagc
caggtcaggtcacaatgctaagggatagggaagacatggtctcctatacc
taaaccagaagctatattcaattgacaactgcttgctaaggaaaacagtt
ttcttcagtggagtgtcttgggtgttcaaaccacattcattgactgaagg
ccccatacccagaagtggatggccaactcaaacaaactcaattgtatttt
gggaaatatttgtcttgtcatggtttatctggacattttttaaccttaaa
aatatttgcttatatataatggcttctgattttttatattatggattccc
ccctgtctgtctctctgtctgtctgtgtctctctctctctctctctctct
ctctccctctctctctctcacacacacacacacacacacacacacacaca
cacacatcacagagagttttataccatgtgcacaaacatgtatttcccca
cacatgtgtatattctttttcacacacattctttatatatgtgtttgtat
tagcgcactaaatcggtgtgtttccgtccccccctctggagtgagagagc
gagagctctctccccacaaaagaggagagagaaaaaaaagaaacaatgct
gtgaggaggggtataatatgtgtaatattttgttgtgcgagagagcttta
gagacacacacactttgctttgcatacatttttctgtatagcagagaaga
gatagtatatatatatctcttcgtctgagagtgcctgctatattctctaa
aagatagaaaaaaatgacaccctctcccctgatgtctgtgtatatatata
tacaccacacaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_77341691_77342221
seq2: B6Ng01-328A01.b_578_1108

seq1  AGTATTTAAATTCTTTCTTTCTTTCTCTCTTTTCTTTGTTTTCTTTCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTAAATTCTTTCTTTCTTTCTCTCTTTTCTTTGTTTTCTTTCTTT  50

seq1  CCTTCCTTCCTTTCTTCCTTCTTTCCTTCCTTCACCAAGTTATTATTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTTCCTTTCTTCCTTCTTTCCTTCCTTCACCAAGTTATTATTGAG  100

seq1  TAGAGTGTTGTTCAGCTTCCACGTGCGTGTGAGCTTTCTATTATTTATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTGTTGTTCAGCTTCCACGTGCGTGTGAGCTTTCTATTATTTATAT  150

seq1  TGTTATTGAAGATCAGCTTCCTGTTATTTTGTTGTTACATTTGGCATTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTGAAGATCAGCTTCCTGTTATTTTGTTGTTACATTTGGCATTCT  200

seq1  GTTCTTGTGACTATCTTGTTTTAGGTTTGTTGAAGGATTTCTTTGTTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTGTGACTATCTTGTTTTAGGTTTGTTGAAGGATTTCTTTGTTGGT  250

seq1  CTATCTAGTGTGTCATTTCCCTCCTTGTGTTGGAGTTTTCCCTTTATTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTAGTGTGTCATTTCCCTCCTTGTGTTGGAGTTTTCCCTTTATTAT  300

seq1  CCTTTGAAGGGCTGGATTTGTGGAAAGATAAAGTGTAAATTTATTTTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGAAGGGCTGGATTTGTGGAAAGATAAAGTGTAAATTTATTTTTGT  350

seq1  CATGGAATACTTTGTTTTCTCCACCTATGGTAATTGAGGGTTTTGCTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAATACTTTGTTTTCTCCACCTATGGTAATTGAGGGTTTTGCTGGG  400

seq1  TTTAGTAGCCT-GGGCTGGCATTTGTGTTCTTTTAGGGTCTGTATAACAT  449
      ||||||||||| |||||||||||||||||| |||||||||||||| ||||
seq2  TTTAGTAGCCTGGGGCTGGCATTTGTGTTC-TTTAGGGTCTGTATTACAT  449

seq1  CTGTCCAGGATCTTC-TGTCTTTCATAGTCTCT-GGTG-AGAAGGAATAT  496
      ||||||| |||| || |||| |||||||||||| |||| ||| | |||||
seq2  CTGTCCA-GATCCTCTTGTC-TTCATAGTCTCTGGGTGAAGAGGTAATAT  497

seq1  ATTTTACAGAAAGTAATTGAATGAAGTACG-AGAGT  531
      | |||||||||||| ||||||||||||||| |||||
seq2  A-TTTACAGAAAGT-ATTGAATGAAGTACGAAGAGT  531


seq1: chr6_96583455_96583669
seq2: B6Ng01-328A01.g_419_929 (reverse)

seq1  --------------------------------------------------  0
                                                        
seq2  TGTGTGTGGTGTATATATATATACACAGACATCAGGGGAGAGGGTGTCAT  50

seq1  --------------------------------------------------  0
                                                        
seq2  TTTTTTCTATCTTTTAGAGAATATAGCAGGCACTCTCAGACGAAGAGATA  100

seq1  --------------------------------------------------  0
                                                        
seq2  TATATATACTATCTCTTCTCTGCTATACAGAAAAATGTATGCAAAGCAAA  150

seq1  --------------------------------------------------  0
                                                        
seq2  GTGTGTGTGTCTCTAAAGCTCTCTCGCACAACAAAATATTACACATATTA  200

seq1  --------------------------------------------------  0
                                                        
seq2  TACCCCTCCTCACAGCATTGTTTCTTTTTTTTCTCTCTCCTCTTTTGTGG  250

seq1  --------------------------------------------------  0
                                                        
seq2  GGAGAGAGCTCTCGCTCTCTCACTCCAGAGGGGGGGACGGAAACACACCG  300

seq1  --TGTGTGTGGT-----GTATGTATGTGTAGTATATGTGTGTGTGTATGG  43
        |  ||| | |       |   || | ||    |||||||||   | | 
seq2  ATTTAGTGCGCTAATACAAACACATATATAAAGAATGTGTGTGAAAAAGA  350

seq1  TGATGGTATATGTGTGTG--AGTA-----TGGTGTTTATGGTGTA----T  82
        ||   | ||||||| |  | ||     | |||   ||||| ||    |
seq2  ATAT-ACACATGTGTGGGGAAATACATGTTTGTGCACATGGTATAAAACT  399

seq1  GTGTATGGTGTGTATGGTATGTGTGTGTGACATGTGAATGTGCGGCGTGT  132
       | | || |||||   || ||||||||||   ||||  |||     ||||
seq2  CTCTGTGATGTGT---GTGTGTGTGTGTG---TGTG--TGT-----GTGT  436

seq1  GTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGACAGAGAGAGA  182
      ||||||||||||||||||||| |||||||||||        |||||||||
seq2  GTGTGTGTGAGAGAGAGAGAGGGAGAGAGAGAG--------AGAGAGAGA  478

seq1  CAGAGAGAGAGAGACAGAGAGAGAGAGAGACAG  215
       ||||||| | ||||||| ||||||| ||||||
seq2  GAGAGAGACACAGACAGACAGAGAGACAGACAG  511


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